Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032006.1

Orthogroup ID

OG0002848

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 3166

Gene Structure 3165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032006.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1250 bp

atgggagtccacggtctctgggaactcctctcccccgtcggccgccgcgtctccgtcgagaccttagccggaagaagactcgccatcgacgcgagcatatggatggttcagttcatgaaggcaatgcgcgacgagaagggagagatggtccgcaacgcgcatttgctcggcttctttcgccggatttgcaagctactctacctgcggaccaagccagtgtttgttttcgacggcggaacgccggcgctcaagcgccgcactgtgatcgctcgccggagacagcgggagaattctcaggctaagctccggaaaacagcagagaaattgcttctcaatcatctcaagtcggcgaggctgaaagacttggctgaggatattaagaaccagagggagaatcaaaagaatgatgccaagggtaaggaagtttcggataaagctggtagttcggggagtggtgatttagaaatgaatgatttggccttaaagcgttgcaaccaggaaaagctggatgaaatgttggcagcatcaattgtggcggaggaagaagggggtttagcaaacagtttgccaaatacttctgctactgttccttgtgaggtggaagacaaagaagaggatgaagagctgatactcccagagatgcatggtgaagttgatccagctgtgttagctgctttgcctccatcaatgcaacttggacttcttttgcagaaaaataagcaggcgaatgatgccaagggtaaaaagattatgtcagatcccgctgaggtagtgggaatcaactcagcaaaatctgatgcggtattgaggactgttgatcaagaaaagctagacgaaatgattgcagcatctattgcggcagagacagatgctagtgtaactaataatgcatcaacatcaactgcttctgttcttgttgatgaggatgtcaatgaagaggaagatgatgaagatgaagagatgatactgccagcaatgcatggtgatgttgatccagctgtattagcagcattgcccccatcgatgcaacttgatcttcttgttcaaattagagagagattgatggcggaaaacagacaaaagtatcagaaggtcaaaaaggaccctgaaaagttctccgagctacaaatacaatcttaccttaagactgttgctttccgtcgcgagattgatcatgtgcagaaagctgcttctggaagggggtttagtggtgtccagacatcacggatagcctctgaaagccatagaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

416

Amino Acids

46.1

Weight (kDa)

5.54

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28030 AT3G28030 AT3G28030 AT3G28030
fragaria_vesca	FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430
malus_domestica	MD17G1038000.v1.1
prunus_persica	Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1
pyrus_communis	pycom17g03420
rosa_chinensis	RchiOBHm_Chr2g0170851
rosa_laevigata	RLG00000021986
rosa_multiflora	Rmu_co8355801.1_g000001 Rmu_sc0009938.1_g000007 Rmu_sc0032006.1_g000001 Rmu_sc0035429.1_g000001 Rmu_sc0042424.1_g000002
rosa_roxburghii	Rroxscaffold_2G00081030
rosa_rugosa	Rorug02G0551800
rosa_samantha	Rh2AG624500 Rh2BG635100 Rh2CG603900 Rh2DG646700
rosa_wichuraiana	Rw2G051730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
AccII	CGCG	5 cut(s)	48, 92, 129, 158, 1164
AccIII	TCCGGA	1 cut(s)	306
AclWI	GGATC	3 cut(s)	650, 752, 986
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	289
AflII	CTTAAG	1 cut(s)	1142
AgsI	TTSAA	1 cut(s)	1046
AjnI	CCWGG	1 cut(s)	495
Alw26I	GTCTC	5 cut(s)	20, 53, 55, 271, 857
AlwI	GGATC	3 cut(s)	650, 752, 986
Aor13HI	TCCGGA	1 cut(s)	306
AoxI	GGCC	2 cut(s)	40, 477
ApeKI	GCWGC	5 cut(s)	521, 671, 845, 1007, 1187
ApoI	RAATTY	1 cut(s)	289
AspLEI	GCGC	4 cut(s)	129, 160, 247, 255
AspS9I	GGNCC	3 cut(s)	148, 207, 1102
AsuHPI	GGTGA	3 cut(s)	467, 659, 995
AvaII	GGWCC	3 cut(s)	148, 207, 1102
BaeI	ACNNNNGTAYC	2 cut(s)	1067, 1100
BarI	GAAGNNNNNNTAC	4 cut(s)	612, 644, 948, 980
BbsI	GAAGAC	2 cut(s)	82, 609
BbvCI	CCTCAGC	2 cut(s)	369, 765
BbvI	GCAGC	5 cut(s)	533, 658, 857, 1019, 1174
BccI	CCATC	6 cut(s)	92, 97, 139, 691, 1027, 1057
BceAI	ACGGC	1 cut(s)	247
BcgI	CGANNNNNNTGC	4 cut(s)	247, 281, 824, 858
BciT130I	CCWGG	1 cut(s)	497
BclI	TGATCA	2 cut(s)	817, 1171
BcoDI	GTCTC	5 cut(s)	20, 53, 55, 271, 857
BfaI	CTAG	2 cut(s)	830, 873
BfoI	RGCGCY	2 cut(s)	248, 256
BfrI	CTTAAG	1 cut(s)	1142
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	9 cut(s)	43, 46, 256, 522, 672, 846, 858, 1008, 1188
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	9 cut(s)	44, 47, 257, 523, 673, 847, 859, 1009, 1189
Bme1390I	CCNGG	1 cut(s)	497
Bme18I	GGWCC	3 cut(s)	148, 207, 1102
BmgT120I	GGNCC	3 cut(s)	148, 207, 1102
BmiI	GGNNCC	1 cut(s)	1104
BmrFI	CCNGG	1 cut(s)	497
BmsI	GCATC	9 cut(s)	397, 533, 630, 721, 787, 857, 859, 899, 1014
BpiI	GAAGAC	2 cut(s)	82, 609
Bpu10I	CCTNAGC	3 cut(s)	64, 369, 765
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	2 cut(s)	233, 326
Bsa29I	ATCGAT	1 cut(s)	1022
BsaBI	GATNNNNATC	1 cut(s)	990
BsaI	GGTCTC	2 cut(s)	20, 53
BsaJI	CCNNGG	3 cut(s)	10, 411, 735
BsaWI	WCCGGW	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	215
Bse3DI	GCAATG	3 cut(s)	129, 981, 1010
Bse8I	GATNNNNATC	1 cut(s)	990
BseAI	TCCGGA	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	497
BseCI	ATCGAT	1 cut(s)	1022
BseDI	CCNNGG	3 cut(s)	10, 411, 735
BseGI	GGATG	4 cut(s)	108, 514, 622, 931
BseJI	GATNNNNATC	1 cut(s)	990
BseMI	GCAATG	3 cut(s)	129, 981, 1010
BseMII	CTCAG	4 cut(s)	308, 360, 756, 798
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	17
BseX3I	CGGCCG	1 cut(s)	40
BseXI	GCAGC	5 cut(s)	533, 658, 857, 1019, 1174
BsgI	GTGCAG	1 cut(s)	1199
Bsh1236I	CGCG	5 cut(s)	48, 92, 129, 158, 1164
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	42, 479
BshVI	ATCGAT	1 cut(s)	1022
BsiEI	CGRYCG	1 cut(s)	43
BsiSI	CCGG	5 cut(s)	69, 181, 242, 274, 307
BsmAI	GTCTC	5 cut(s)	20, 53, 55, 271, 857
BsmBI	CGTCTC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	42, 479
Bso31I	GGTCTC	2 cut(s)	20, 53
Bsp13I	TCCGGA	1 cut(s)	306
Bsp143I	GATC	7 cut(s)	264, 655, 757, 817, 991, 1033, 1171
Bsp1720I	GCTNAGC	1 cut(s)	300
Bsp68I	TCGCGA	1 cut(s)	1164
BspANI	GGCC	2 cut(s)	42, 479
BspCNI	CTCAG	4 cut(s)	307, 361, 757, 797
BspDI	ATCGAT	1 cut(s)	1022
BspEI	TCCGGA	1 cut(s)	306
BspFNI	CGCG	5 cut(s)	48, 92, 129, 158, 1164
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	1104
BspMI	ACCTGC	1 cut(s)	210
BspPI	GGATC	3 cut(s)	650, 752, 986
BspQI	GCTCTTC	1 cut(s)	615
BspTI	CTTAAG	1 cut(s)	1142
BspTNI	GGTCTC	2 cut(s)	20, 53
BsrDI	GCAATG	3 cut(s)	129, 981, 1010
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	10, 411, 735
BssMI	GATC	7 cut(s)	264, 655, 757, 817, 991, 1033, 1171
BssT1I	CCWWGG	2 cut(s)	411, 735
Bst2UI	CCWGG	1 cut(s)	497
Bst4CI	ACNGT	6 cut(s)	14, 262, 563, 586, 814, 1150
Bst6I	CTCTTC	4 cut(s)	606, 615, 930, 951
BstAFI	CTTAAG	1 cut(s)	1142
BstAPI	GCANNNNNTGC	1 cut(s)	854
BstC8I	GCNNGC	6 cut(s)	94, 191, 243, 271, 723, 972
BstDEI	CTNAG	6 cut(s)	64, 294, 300, 369, 765, 784
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	4 cut(s)	108, 514, 622, 931
BstFNI	CGCG	5 cut(s)	48, 92, 129, 158, 1164
BstH2I	RGCGCY	2 cut(s)	248, 256
BstHHI	GCGC	4 cut(s)	129, 160, 247, 255
BstKTI	GATC	7 cut(s)	267, 658, 760, 820, 994, 1036, 1174
BstMAI	GTCTC	5 cut(s)	20, 53, 55, 271, 857
BstMBI	GATC	7 cut(s)	264, 655, 757, 817, 991, 1033, 1171
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	9 cut(s)	89, 177, 186, 211, 668, 731, 854, 976, 1004
BstNI	CCWGG	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	495
BstUI	CGCG	5 cut(s)	48, 92, 129, 158, 1164
BstV1I	GCAGC	5 cut(s)	533, 658, 857, 1019, 1174
BstV2I	GAAGAC	2 cut(s)	82, 609
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
BstZI	CGGCCG	1 cut(s)	40
Bsu15I	ATCGAT	1 cut(s)	1022
BsuRI	GGCC	2 cut(s)	42, 479
BsuTUI	ATCGAT	1 cut(s)	1022
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	4 cut(s)	108, 514, 622, 931
BtsIMutI	CAGTG	2 cut(s)	222, 258
BtuMI	TCGCGA	1 cut(s)	1164
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	6 cut(s)	94, 191, 243, 271, 723, 972
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	4 cut(s)	129, 160, 247, 255
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	3 cut(s)	148, 207, 1102
ClaI	ATCGAT	1 cut(s)	1022
CseI	GACGC	2 cut(s)	37, 98
CviAII	CATG	4 cut(s)	115, 644, 980, 1175
DdeI	CTNAG	6 cut(s)	64, 294, 300, 369, 765, 784
DpnI	GATC	7 cut(s)	266, 657, 759, 819, 993, 1035, 1173
DpnII	GATC	7 cut(s)	264, 655, 757, 817, 991, 1033, 1171
EaeI	YGGCCR	1 cut(s)	40
EagI	CGGCCG	1 cut(s)	40
Eam1104I	CTCTTC	4 cut(s)	606, 615, 930, 951
EarI	CTCTTC	4 cut(s)	606, 615, 930, 951
EciI	GGCGGA	3 cut(s)	249, 551, 1082
EclXI	CGGCCG	1 cut(s)	40
Eco130I	CCWWGG	2 cut(s)	411, 735
Eco31I	GGTCTC	2 cut(s)	20, 53
Eco47I	GGWCC	3 cut(s)	148, 207, 1102
Eco52I	CGGCCG	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	1102
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	495
EcoT14I	CCWWGG	2 cut(s)	411, 735
EcoT22I	ATGCAT	3 cut(s)	645, 892, 981
ErhI	CCWWGG	2 cut(s)	411, 735
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	4 cut(s)	118, 647, 983, 1178
FaiI	YATR	8 cut(s)	98, 100, 116, 645, 752, 981, 1176, 1245
FatI	CATG	4 cut(s)	114, 643, 979, 1174
FauI	CCCGC	2 cut(s)	276, 769
FauNDI	CATATG	1 cut(s)	98
FbaI	TGATCA	2 cut(s)	817, 1171
Fnu4HI	GCNGC	9 cut(s)	43, 46, 256, 522, 672, 846, 858, 1008, 1188
FokI	GGATG	4 cut(s)	115, 521, 629, 938
Fsp4HI	GCNGC	9 cut(s)	43, 46, 256, 522, 672, 846, 858, 1008, 1188
FspBI	CTAG	2 cut(s)	830, 873
GlaI	GCGC	4 cut(s)	128, 159, 246, 254
GluI	GCNGC	9 cut(s)	43, 46, 256, 522, 672, 846, 858, 1008, 1188
HaeII	RGCGCY	2 cut(s)	248, 256
HaeIII	GGCC	2 cut(s)	42, 479
HapII	CCGG	5 cut(s)	69, 181, 242, 274, 307
HgaI	GACGC	2 cut(s)	37, 98
HhaI	GCGC	4 cut(s)	129, 160, 247, 255
Hin1II	CATG	4 cut(s)	118, 647, 983, 1178
Hin6I	GCGC	4 cut(s)	127, 158, 245, 253
HinP1I	GCGC	4 cut(s)	127, 158, 245, 253
HinfI	GANTC	4 cut(s)	6, 78, 394, 777
HpaII	CCGG	5 cut(s)	69, 181, 242, 274, 307
HphI	GGTGA	3 cut(s)	467, 659, 995
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	6 cut(s)	430, 757, 796, 1089, 1120, 1237
Hpy188III	TCNNGA	7 cut(s)	58, 115, 307, 821, 1163, 1194, 1216
Hpy8I	GTNNAC	1 cut(s)	10
Hpy99I	CGWCG	6 cut(s)	41, 59, 92, 134, 233, 1164
HpyAV	CCTTC	5 cut(s)	112, 130, 539, 1084, 1191
HpyCH4III	ACNGT	6 cut(s)	14, 262, 563, 586, 814, 1150
HpyF10VI	GCNNNNNNNGC	9 cut(s)	89, 177, 186, 211, 668, 731, 854, 976, 1004
HpyF3I	CTNAG	6 cut(s)	64, 294, 300, 369, 765, 784
Hsp92II	CATG	4 cut(s)	118, 647, 983, 1178
HspAI	GCGC	4 cut(s)	127, 158, 245, 253
Kpn2I	TCCGGA	1 cut(s)	306
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Ksp22I	TGATCA	2 cut(s)	817, 1171
Kzo9I	GATC	7 cut(s)	264, 655, 757, 817, 991, 1033, 1171
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	1 cut(s)	309
Lsp1109I	GCAGC	5 cut(s)	533, 658, 857, 1019, 1174
LweI	GCATC	9 cut(s)	397, 533, 630, 721, 787, 857, 859, 899, 1014
MaeI	CTAG	2 cut(s)	830, 873
MaeIII	GTNAC	1 cut(s)	877
MalI	GATC	7 cut(s)	266, 657, 759, 819, 993, 1035, 1173
MboI	GATC	7 cut(s)	264, 655, 757, 817, 991, 1033, 1171
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	757
MluCI	AATT	4 cut(s)	289, 323, 528, 1047
MlyI	GAGTC	2 cut(s)	15, 72
Mph1103I	ATGCAT	3 cut(s)	645, 892, 981
MreI	CGCCGGCG	1 cut(s)	241
MroI	TCCGGA	1 cut(s)	306
MroNI	GCCGGC	1 cut(s)	241
MseI	TTAA	3 cut(s)	378, 482, 1143
MslI	CAYNNNNRTG	2 cut(s)	101, 984
MspA1I	CMGCKG	4 cut(s)	283, 662, 764, 998
MspCI	CTTAAG	1 cut(s)	1142
MspI	CCGG	5 cut(s)	69, 181, 242, 274, 307
MspR9I	CCNGG	1 cut(s)	497
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	497
MvnI	CGCG	5 cut(s)	48, 92, 129, 158, 1164
MwoI	GCNNNNNNNGC	9 cut(s)	89, 177, 186, 211, 668, 731, 854, 976, 1004
NaeI	GCCGGC	1 cut(s)	243
NdeI	CATATG	1 cut(s)	98
NdeII	GATC	7 cut(s)	264, 655, 757, 817, 991, 1033, 1171
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	4 cut(s)	118, 647, 983, 1178
NlaIV	GGNNCC	1 cut(s)	1104
NmeAIII	GCCGAG	1 cut(s)	147
NruI	TCGCGA	1 cut(s)	1164
NsiI	ATGCAT	3 cut(s)	645, 892, 981
PagI	TCATGA	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	394, 777
PkrI	GCNGC	9 cut(s)	44, 47, 257, 523, 673, 847, 859, 1009, 1189
PleI	GAGTC	2 cut(s)	14, 72
PpsI	GAGTC	2 cut(s)	14, 72
PpuMI	RGGWCCY	1 cut(s)	1102
Psp5II	RGGWCCY	1 cut(s)	1102
Psp6I	CCWGG	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	1 cut(s)	1104
PspPI	GGNCC	3 cut(s)	148, 207, 1102
PspPPI	RGGWCCY	1 cut(s)	1102
PsuI	RGATCY	1 cut(s)	757
PvuII	CAGCTG	2 cut(s)	662, 998
RruI	TCGCGA	1 cut(s)	1164
RseI	CAYNNNNRTG	2 cut(s)	101, 984
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	3 cut(s)	378, 482, 1143
SatI	GCNGC	9 cut(s)	43, 46, 256, 522, 672, 846, 858, 1008, 1188
Sau3AI	GATC	7 cut(s)	264, 655, 757, 817, 991, 1033, 1171
Sau96I	GGNCC	3 cut(s)	148, 207, 1102
SchI	GAGTC	2 cut(s)	15, 72
ScrFI	CCNGG	1 cut(s)	497
SfaNI	GCATC	9 cut(s)	397, 533, 630, 721, 787, 857, 859, 899, 1014
SgrAI	CRCCGGYG	1 cut(s)	241
SinI	GGWCC	3 cut(s)	148, 207, 1102
SmiMI	CAYNNNNRTG	2 cut(s)	101, 984
SmlI	CTYRAG	3 cut(s)	248, 341, 1142
SmoI	CTYRAG	3 cut(s)	248, 341, 1142
Sse9I	AATT	4 cut(s)	289, 323, 528, 1047
SspMI	CTAG	2 cut(s)	830, 873
StyD4I	CCNGG	1 cut(s)	495
StyI	CCWWGG	2 cut(s)	411, 735
TaaI	ACNGT	6 cut(s)	14, 262, 563, 586, 814, 1150
TaqI	TCGA	4 cut(s)	57, 87, 228, 1022
TasI	AATT	4 cut(s)	289, 323, 528, 1047
TauI	GCSGC	4 cut(s)	45, 48, 258, 860
TfiI	GAWTC	2 cut(s)	394, 777
Tru1I	TTAA	3 cut(s)	378, 482, 1143
Tru9I	TTAA	3 cut(s)	378, 482, 1143
TscAI	CASTG	2 cut(s)	222, 265
TseI	GCWGC	5 cut(s)	521, 671, 845, 1007, 1187
TspDTI	ATGAA	8 cut(s)	103, 131, 482, 525, 633, 948, 963, 969
TspGWI	ACGGA	3 cut(s)	43, 1148, 1240
TspRI	CASTG	2 cut(s)	222, 265
Vha464I	CTTAAG	1 cut(s)	1142
VpaK11BI	GGWCC	3 cut(s)	148, 207, 1102
XapI	RAATTY	1 cut(s)	289
XspI	CTAG	2 cut(s)	830, 873
Zsp2I	ATGCAT	3 cut(s)	645, 892, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.