DNA repair protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G28030 AT3G28030 AT3G28030 AT3G28030 |
| fragaria_vesca | FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 FvH4_6g50430 |
| malus_domestica | MD17G1038000.v1.1 |
| prunus_persica | Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 Prupe.3G281300_v2.0.a1 |
| pyrus_communis | pycom17g03420 |
| rosa_chinensis | RchiOBHm_Chr2g0170851 |
| rosa_laevigata | RLG00000021986 |
| rosa_multiflora | Rmu_co8355801.1_g000001 Rmu_sc0009938.1_g000007 Rmu_sc0032006.1_g000001 Rmu_sc0035429.1_g000001 Rmu_sc0042424.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00081030 |
| rosa_rugosa | Rorug02G0551800 |
| rosa_samantha | Rh2AG624500 Rh2BG635100 Rh2CG603900 Rh2DG646700 |
| rosa_wichuraiana | Rw2G051730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 4250 |
| Acc36I | ACCTGC | 3 cut(s) | 210, 1868, 4242 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 4778, 4898 |
| AccI | GTMKAC | 1 cut(s) | 2977 |
| AccII | CGCG | 6 cut(s) | 48, 92, 129, 158, 1164, 3091 |
| AccIII | TCCGGA | 1 cut(s) | 306 |
| AcoI | YGGCCR | 2 cut(s) | 40, 366 |
| AcsI | RAATTY | 7 cut(s) | 289, 1250, 1522, 2711, 3302, 3516, 4632 |
| AcuI | CTGAAG | 5 cut(s) | 1869, 2367, 2445, 3246, 4584 |
| AdeI | CACNNNGTG | 1 cut(s) | 1745 |
| AfaI | GTAC | 9 cut(s) | 1290, 1981, 2314, 2506, 3743, 3925, 4114, 4125, 4618 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 1584, 1640, 2801, 3503, 4451, 4763, 4778, 4898 |
| AflII | CTTAAG | 2 cut(s) | 341, 1142 |
| AflIII | ACRYGT | 1 cut(s) | 3783 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3358 |
| AhlI | ACTAGT | 1 cut(s) | 4511 |
| AjnI | CCWGG | 6 cut(s) | 495, 1711, 2104, 3374, 4519, 4771 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1330, 1362, 4596, 4628, 4698, 4730 |
| AleI | CACNNNNGTG | 1 cut(s) | 1694 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2235, 2267, 3708, 3740 |
| Alw21I | GWGCWC | 2 cut(s) | 1596, 4906 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2959, 3362 |
| Ama87I | CYCGRG | 2 cut(s) | 1633, 2177 |
| Aor13HI | TCCGGA | 1 cut(s) | 306 |
| AoxI | GGCC | 7 cut(s) | 40, 366, 477, 2028, 3292, 4371, 4453 |
| ApeKI | GCWGC | 9 cut(s) | 521, 671, 845, 1007, 1187, 1298, 1614, 3878, 4046 |
| ApoI | RAATTY | 7 cut(s) | 289, 1250, 1522, 2711, 3302, 3516, 4632 |
| AseI | ATTAAT | 2 cut(s) | 2559, 2772 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2250 |
| AspLEI | GCGC | 6 cut(s) | 129, 160, 247, 255, 3091, 4251 |
| AspS9I | GGNCC | 7 cut(s) | 148, 207, 1102, 1629, 2028, 2476, 4453 |
| AvaI | CYCGRG | 2 cut(s) | 1633, 2177 |
| AvaII | GGWCC | 5 cut(s) | 148, 207, 1102, 1629, 2476 |
| AxyI | CCTNAGG | 1 cut(s) | 3282 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1067, 1100, 4644, 4677 |
| BamHI | GGATCC | 1 cut(s) | 1494 |
| BanII | GRGCYC | 1 cut(s) | 4906 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 612, 644, 948, 980, 3907, 3939 |
| BbsI | GAAGAC | 5 cut(s) | 82, 609, 1700, 1824, 4572 |
| Bbv12I | GWGCWC | 2 cut(s) | 1596, 4906 |
| BbvCI | CCTCAGC | 1 cut(s) | 4050 |
| BbvI | GCAGC | 9 cut(s) | 533, 658, 857, 1019, 1174, 1285, 1626, 3865, 4033 |
| BceAI | ACGGC | 2 cut(s) | 247, 4665 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 824, 858, 4328, 4362 |
| BciT130I | CCWGG | 6 cut(s) | 497, 1713, 2106, 3376, 4521, 4773 |
| BclI | TGATCA | 4 cut(s) | 817, 2719, 4537, 4834 |
| BcuI | ACTAGT | 1 cut(s) | 4511 |
| BfmI | CTRYAG | 2 cut(s) | 1800, 4500 |
| BfoI | RGCGCY | 2 cut(s) | 248, 256 |
| BfrI | CTTAAG | 2 cut(s) | 341, 1142 |
| BfuAI | ACCTGC | 3 cut(s) | 210, 1868, 4242 |
| BglII | AGATCT | 1 cut(s) | 3445 |
| BlpI | GCTNAGC | 1 cut(s) | 300 |
| BmcAI | AGTACT | 3 cut(s) | 1290, 1981, 3925 |
| Bme1390I | CCNGG | 6 cut(s) | 497, 1713, 2106, 3376, 4521, 4773 |
| Bme18I | GGWCC | 5 cut(s) | 148, 207, 1102, 1629, 2476 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3358 |
| BmeT110I | CYCGRG | 2 cut(s) | 1633, 2177 |
| BmgT120I | GGNCC | 7 cut(s) | 148, 207, 1102, 1629, 2028, 2476, 4453 |
| BmiI | GGNNCC | 3 cut(s) | 1104, 1496, 1631 |
| BmrFI | CCNGG | 6 cut(s) | 497, 1713, 2106, 3376, 4521, 4773 |
| BmrI | ACTGGG | 3 cut(s) | 1963, 2294, 4136 |
| BmuI | ACTGGG | 3 cut(s) | 1963, 2294, 4136 |
| BpiI | GAAGAC | 5 cut(s) | 82, 609, 1700, 1824, 4572 |
| BpmI | CTGGAG | 2 cut(s) | 3870, 4146 |
| Bpu10I | CCTNAGC | 3 cut(s) | 64, 2799, 4050 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 300 |
| BpuEI | CTTGAG | 3 cut(s) | 233, 3470, 4493 |
| Bsa29I | ATCGAT | 1 cut(s) | 1022 |
| BsaAI | YACGTR | 1 cut(s) | 3812 |
| BsaBI | GATNNNNATC | 2 cut(s) | 990, 4314 |
| BsaI | GGTCTC | 2 cut(s) | 20, 53 |
| BsaJI | CCNNGG | 7 cut(s) | 10, 369, 411, 735, 2104, 3861, 4647 |
| BsaWI | WCCGGW | 1 cut(s) | 306 |
| BsaXI | ACNNNNNCTCC | 5 cut(s) | 132, 162, 2235, 2265, 4930 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 1584, 1640, 2801, 3503, 4451, 4763, 4778, 4898 |
| Bse118I | RCCGGY | 2 cut(s) | 214, 241 |
| Bse1I | ACTGG | 7 cut(s) | 1279, 1615, 1958, 2300, 3853, 4131, 4848 |
| Bse21I | CCTNAGG | 1 cut(s) | 3282 |
| Bse3DI | GCAATG | 6 cut(s) | 129, 981, 1010, 1468, 2687, 4537 |
| Bse8I | GATNNNNATC | 2 cut(s) | 990, 4314 |
| BseAI | TCCGGA | 1 cut(s) | 306 |
| BseBI | CCWGG | 6 cut(s) | 497, 1713, 2106, 3376, 4521, 4773 |
| BseCI | ATCGAT | 1 cut(s) | 1022 |
| BseDI | CCNNGG | 7 cut(s) | 10, 369, 411, 735, 2104, 3861, 4647 |
| BseGI | GGATG | 9 cut(s) | 108, 514, 622, 931, 1456, 2197, 2407, 3295, 3439 |
| BseJI | GATNNNNATC | 2 cut(s) | 990, 4314 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 1584, 1640, 2801, 3503, 4451, 4763, 4778, 4898 |
| BseMI | GCAATG | 6 cut(s) | 129, 981, 1010, 1468, 2687, 4537 |
| BseNI | ACTGG | 7 cut(s) | 1279, 1615, 1958, 2300, 3853, 4131, 4848 |
| BseRI | GAGGAG | 6 cut(s) | 17, 611, 1973, 2185, 2861, 3299 |
| BseX3I | CGGCCG | 1 cut(s) | 40 |
| BseXI | GCAGC | 9 cut(s) | 533, 658, 857, 1019, 1174, 1285, 1626, 3865, 4033 |
| BseYI | CCCAGC | 3 cut(s) | 1583, 3678, 3935 |
| BsgI | GTGCAG | 2 cut(s) | 1199, 4449 |
| Bsh1236I | CGCG | 6 cut(s) | 48, 92, 129, 158, 1164, 3091 |
| Bsh1285I | CGRYCG | 1 cut(s) | 43 |
| BshFI | GGCC | 7 cut(s) | 42, 368, 479, 2030, 3294, 4373, 4455 |
| BshVI | ATCGAT | 1 cut(s) | 1022 |
| BsiEI | CGRYCG | 1 cut(s) | 43 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1596, 4906 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1633, 2177 |
| BsiSI | CCGG | 7 cut(s) | 69, 181, 215, 242, 256, 274, 307 |
| BslFI | GGGAC | 3 cut(s) | 1615, 1978, 3710 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 1584, 1640, 2801, 3503, 4451, 4763, 4778, 4898 |
| BsmBI | CGTCTC | 1 cut(s) | 55 |
| BsmFI | GGGAC | 3 cut(s) | 1615, 1978, 3710 |
| BsmI | GAATGC | 2 cut(s) | 1345, 3880 |
| BsnI | GGCC | 7 cut(s) | 42, 368, 479, 2030, 3294, 4373, 4455 |
| Bso31I | GGTCTC | 2 cut(s) | 20, 53 |
| BsoBI | CYCGRG | 2 cut(s) | 1633, 2177 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1596, 4906 |
| Bsp13I | TCCGGA | 1 cut(s) | 306 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 300 |
| Bsp68I | TCGCGA | 1 cut(s) | 1164 |
| BspANI | GGCC | 7 cut(s) | 42, 368, 479, 2030, 3294, 4373, 4455 |
| BspDI | ATCGAT | 1 cut(s) | 1022 |
| BspEI | TCCGGA | 1 cut(s) | 306 |
| BspFNI | CGCG | 6 cut(s) | 48, 92, 129, 158, 1164, 3091 |
| BspHI | TCATGA | 3 cut(s) | 114, 2749, 4636 |
| BspLI | GGNNCC | 3 cut(s) | 1104, 1496, 1631 |
| BspMAI | CTGCAG | 1 cut(s) | 4504 |
| BspMI | ACCTGC | 3 cut(s) | 210, 1868, 4242 |
| BspQI | GCTCTTC | 2 cut(s) | 615, 2383 |
| BspTI | CTTAAG | 2 cut(s) | 341, 1142 |
| BspTNI | GGTCTC | 2 cut(s) | 20, 53 |
| BsrDI | GCAATG | 6 cut(s) | 129, 981, 1010, 1468, 2687, 4537 |
| BsrFI | RCCGGY | 2 cut(s) | 214, 241 |
| BsrI | ACTGG | 7 cut(s) | 1279, 1615, 1958, 2300, 3853, 4131, 4848 |
| BssAI | RCCGGY | 2 cut(s) | 214, 241 |
| BssECI | CCNNGG | 7 cut(s) | 10, 369, 411, 735, 2104, 3861, 4647 |
| BssNAI | GTATAC | 1 cut(s) | 2978 |
| BssT1I | CCWWGG | 2 cut(s) | 411, 735 |
| Bst1107I | GTATAC | 1 cut(s) | 2978 |
| Bst2UI | CCWGG | 6 cut(s) | 497, 1713, 2106, 3376, 4521, 4773 |
| BstAFI | CTTAAG | 2 cut(s) | 341, 1142 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 854, 3675 |
| BstBAI | YACGTR | 1 cut(s) | 3812 |
| BstC8I | GCNNGC | 8 cut(s) | 94, 191, 243, 271, 723, 972, 4044, 4457 |
| BstDSI | CCRYGG | 2 cut(s) | 10, 4647 |
| BstEII | GGTNACC | 1 cut(s) | 1573 |
| BstF5I | GGATG | 9 cut(s) | 108, 514, 622, 931, 1456, 2197, 2407, 3295, 3439 |
| BstFNI | CGCG | 6 cut(s) | 48, 92, 129, 158, 1164, 3091 |
| BstH2I | RGCGCY | 2 cut(s) | 248, 256 |
| BstHHI | GCGC | 6 cut(s) | 129, 160, 247, 255, 3091, 4251 |
| BstMCI | CGRYCG | 1 cut(s) | 43 |
| BstNI | CCWGG | 6 cut(s) | 497, 1713, 2106, 3376, 4521, 4773 |
| BstPI | GGTNACC | 1 cut(s) | 1573 |
| BstSCI | CCNGG | 6 cut(s) | 495, 1711, 2104, 3374, 4519, 4771 |
| BstSFI | CTRYAG | 2 cut(s) | 1800, 4500 |
| BstSNI | TACGTA | 1 cut(s) | 3812 |
| BstUI | CGCG | 6 cut(s) | 48, 92, 129, 158, 1164, 3091 |
| BstV1I | GCAGC | 9 cut(s) | 533, 658, 857, 1019, 1174, 1285, 1626, 3865, 4033 |
| BstV2I | GAAGAC | 5 cut(s) | 82, 609, 1700, 1824, 4572 |
| BstX2I | RGATCY | 6 cut(s) | 757, 1494, 1528, 1678, 3445, 4589 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2324 |
| BstYI | RGATCY | 6 cut(s) | 757, 1494, 1528, 1678, 3445, 4589 |
| BstZ17I | GTATAC | 1 cut(s) | 2978 |
| BstZI | CGGCCG | 1 cut(s) | 40 |
| Bsu15I | ATCGAT | 1 cut(s) | 1022 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3282 |
| BsuRI | GGCC | 7 cut(s) | 42, 368, 479, 2030, 3294, 4373, 4455 |
| BsuTUI | ATCGAT | 1 cut(s) | 1022 |
| BtgI | CCRYGG | 2 cut(s) | 10, 4647 |
| BtgZI | GCGATG | 1 cut(s) | 4928 |
| BtsCI | GGATG | 9 cut(s) | 108, 514, 622, 931, 1456, 2197, 2407, 3295, 3439 |
| BtsI | GCAGTG | 2 cut(s) | 1689, 2938 |
| BtuMI | TCGCGA | 1 cut(s) | 1164 |
| BveI | ACCTGC | 3 cut(s) | 210, 1868, 4242 |
| Cac8I | GCNNGC | 8 cut(s) | 94, 191, 243, 271, 723, 972, 4044, 4457 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2959, 3362 |
| CciI | TCATGA | 3 cut(s) | 114, 2749, 4636 |
| CfoI | GCGC | 6 cut(s) | 129, 160, 247, 255, 3091, 4251 |
| Cfr10I | RCCGGY | 2 cut(s) | 214, 241 |
| Cfr13I | GGNCC | 7 cut(s) | 148, 207, 1102, 1629, 2028, 2476, 4453 |
| ClaI | ATCGAT | 1 cut(s) | 1022 |
| CseI | GACGC | 3 cut(s) | 37, 98, 3362 |
| CsiI | ACCWGGT | 2 cut(s) | 4519, 4771 |
| Csp6I | GTAC | 9 cut(s) | 1289, 1980, 2313, 2505, 3742, 3924, 4113, 4124, 4617 |
| CviQI | GTAC | 9 cut(s) | 1289, 1980, 2313, 2505, 3742, 3924, 4113, 4124, 4617 |
| DraI | TTTAAA | 1 cut(s) | 2511 |
| DraIII | CACNNNGTG | 1 cut(s) | 1745 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3358 |
| EaeI | YGGCCR | 2 cut(s) | 40, 366 |
| EagI | CGGCCG | 1 cut(s) | 40 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3358 |
| EciI | GGCGGA | 2 cut(s) | 249, 1082 |
| Ecl136II | GAGCTC | 1 cut(s) | 4904 |
| EclXI | CGGCCG | 1 cut(s) | 40 |
| Eco105I | TACGTA | 1 cut(s) | 3812 |
| Eco130I | CCWWGG | 2 cut(s) | 411, 735 |
| Eco24I | GRGCYC | 1 cut(s) | 4906 |
| Eco31I | GGTCTC | 2 cut(s) | 20, 53 |
| Eco32I | GATATC | 1 cut(s) | 1809 |
| Eco47I | GGWCC | 5 cut(s) | 148, 207, 1102, 1629, 2476 |
| Eco52I | CGGCCG | 1 cut(s) | 40 |
| Eco53kI | GAGCTC | 1 cut(s) | 4904 |
| Eco57I | CTGAAG | 5 cut(s) | 1869, 2367, 2445, 3246, 4584 |
| Eco81I | CCTNAGG | 1 cut(s) | 3282 |
| Eco88I | CYCGRG | 2 cut(s) | 1633, 2177 |
| Eco91I | GGTNACC | 1 cut(s) | 1573 |
| EcoICRI | GAGCTC | 1 cut(s) | 4904 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1102, 1629 |
| EcoO65I | GGTNACC | 1 cut(s) | 1573 |
| EcoRI | GAATTC | 2 cut(s) | 289, 4632 |
| EcoRII | CCWGG | 6 cut(s) | 495, 1711, 2104, 3374, 4519, 4771 |
| EcoRV | GATATC | 1 cut(s) | 1809 |
| EcoT14I | CCWWGG | 2 cut(s) | 411, 735 |
| EcoT22I | ATGCAT | 5 cut(s) | 645, 892, 981, 2485, 3277 |
| EcoT38I | GRGCYC | 1 cut(s) | 4906 |
| ErhI | CCWWGG | 2 cut(s) | 411, 735 |
| Esp3I | CGTCTC | 1 cut(s) | 55 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 4455, 4487 |
| FaqI | GGGAC | 3 cut(s) | 1615, 1978, 3710 |
| FauI | CCCGC | 1 cut(s) | 276 |
| FauNDI | CATATG | 3 cut(s) | 98, 3429, 4218 |
| FbaI | TGATCA | 4 cut(s) | 817, 2719, 4537, 4834 |
| FblI | GTMKAC | 1 cut(s) | 2977 |
| FokI | GGATG | 9 cut(s) | 115, 521, 629, 938, 1463, 2204, 2414, 3302, 3446 |
| FriOI | GRGCYC | 1 cut(s) | 4906 |
| FspI | TGCGCA | 1 cut(s) | 4250 |
| GlaI | GCGC | 6 cut(s) | 128, 159, 246, 254, 3090, 4250 |
| GsaI | CCCAGC | 3 cut(s) | 1587, 3682, 3939 |
| GsuI | CTGGAG | 2 cut(s) | 3870, 4146 |
| HaeII | RGCGCY | 2 cut(s) | 248, 256 |
| HaeIII | GGCC | 7 cut(s) | 42, 368, 479, 2030, 3294, 4373, 4455 |
| HapII | CCGG | 7 cut(s) | 69, 181, 215, 242, 256, 274, 307 |
| HgaI | GACGC | 3 cut(s) | 37, 98, 3362 |
| HhaI | GCGC | 6 cut(s) | 129, 160, 247, 255, 3091, 4251 |
| Hin6I | GCGC | 6 cut(s) | 127, 158, 245, 253, 3089, 4249 |
| HinP1I | GCGC | 6 cut(s) | 127, 158, 245, 253, 3089, 4249 |
| HincII | GTYRAC | 4 cut(s) | 2296, 3624, 3700, 3943 |
| HindII | GTYRAC | 4 cut(s) | 2296, 3624, 3700, 3943 |
| HindIII | AAGCTT | 1 cut(s) | 3774 |
| HpaII | CCGG | 7 cut(s) | 69, 181, 215, 242, 256, 274, 307 |
| Hpy99I | CGWCG | 8 cut(s) | 41, 59, 92, 134, 233, 1164, 2604, 4379 |
| HpyCH4IV | ACGT | 4 cut(s) | 2911, 3129, 3785, 3811 |
| HpySE526I | ACGT | 4 cut(s) | 2911, 3129, 3785, 3811 |
| HspAI | GCGC | 6 cut(s) | 127, 158, 245, 253, 3089, 4249 |
| Kpn2I | TCCGGA | 1 cut(s) | 306 |
| KroI | GCCGGC | 1 cut(s) | 241 |
| KroNI | GCCGGC | 1 cut(s) | 243 |
| Ksp22I | TGATCA | 4 cut(s) | 817, 2719, 4537, 4834 |
| LguI | GCTCTTC | 2 cut(s) | 615, 2383 |
| LmnI | GCTCC | 3 cut(s) | 309, 2956, 4901 |
| Lsp1109I | GCAGC | 9 cut(s) | 533, 658, 857, 1019, 1174, 1285, 1626, 3865, 4033 |
| MabI | ACCWGGT | 2 cut(s) | 4519, 4771 |
| MaeII | ACGT | 4 cut(s) | 2911, 3129, 3785, 3811 |
| MaeIII | GTNAC | 9 cut(s) | 877, 1387, 1573, 1792, 1888, 1949, 2593, 3055, 3586 |
| MfeI | CAATTG | 2 cut(s) | 528, 3460 |
| MflI | RGATCY | 6 cut(s) | 757, 1494, 1528, 1678, 3445, 4589 |
| MhlI | GDGCHC | 2 cut(s) | 1596, 4906 |
| MmeI | TCCRAC | 4 cut(s) | 3330, 3521, 3946, 4188 |
| Mph1103I | ATGCAT | 5 cut(s) | 645, 892, 981, 2485, 3277 |
| MreI | CGCCGGCG | 1 cut(s) | 241 |
| MroI | TCCGGA | 1 cut(s) | 306 |
| MroNI | GCCGGC | 1 cut(s) | 241 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2250 |
| MseI | TTAA | 9 cut(s) | 342, 378, 482, 554, 1143, 2510, 2559, 2772, 3173 |
| MslI | CAYNNNNRTG | 5 cut(s) | 101, 984, 1694, 3432, 4577 |
| MspA1I | CMGCKG | 4 cut(s) | 283, 662, 998, 1298 |
| MspCI | CTTAAG | 2 cut(s) | 341, 1142 |
| MspI | CCGG | 7 cut(s) | 69, 181, 215, 242, 256, 274, 307 |
| MspR9I | CCNGG | 6 cut(s) | 497, 1713, 2106, 3376, 4521, 4773 |
| MunI | CAATTG | 2 cut(s) | 528, 3460 |
| Mva1269I | GAATGC | 2 cut(s) | 1345, 3880 |
| MvaI | CCWGG | 6 cut(s) | 497, 1713, 2106, 3376, 4521, 4773 |
| MvnI | CGCG | 6 cut(s) | 48, 92, 129, 158, 1164, 3091 |
| NaeI | GCCGGC | 1 cut(s) | 243 |
| NdeI | CATATG | 3 cut(s) | 98, 3429, 4218 |
| NgoMIV | GCCGGC | 1 cut(s) | 241 |
| NlaIV | GGNNCC | 3 cut(s) | 1104, 1496, 1631 |
| NmeAIII | GCCGAG | 3 cut(s) | 147, 343, 394 |
| NmuCI | GTSAC | 3 cut(s) | 1387, 1949, 3055 |
| NruI | TCGCGA | 1 cut(s) | 1164 |
| NsbI | TGCGCA | 1 cut(s) | 4250 |
| NsiI | ATGCAT | 5 cut(s) | 645, 892, 981, 2485, 3277 |
| OliI | CACNNNNGTG | 1 cut(s) | 1694 |
| PaeR7I | CTCGAG | 1 cut(s) | 2177 |
| PagI | TCATGA | 3 cut(s) | 114, 2749, 4636 |
| PciSI | GCTCTTC | 2 cut(s) | 615, 2383 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 45 |
| PctI | GAATGC | 2 cut(s) | 1345, 3880 |
| PdiI | GCCGGC | 1 cut(s) | 243 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2250 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 4778, 4898 |
| Ppu21I | YACGTR | 1 cut(s) | 3812 |
| PpuMI | RGGWCCY | 2 cut(s) | 1102, 1629 |
| PshBI | ATTAAT | 2 cut(s) | 2559, 2772 |
| Psp124BI | GAGCTC | 1 cut(s) | 4906 |
| Psp5II | RGGWCCY | 2 cut(s) | 1102, 1629 |
| Psp6I | CCWGG | 6 cut(s) | 495, 1711, 2104, 3374, 4519, 4771 |
| PspEI | GGTNACC | 1 cut(s) | 1573 |
| PspFI | CCCAGC | 3 cut(s) | 1583, 3678, 3935 |
| PspGI | CCWGG | 6 cut(s) | 495, 1711, 2104, 3374, 4519, 4771 |
| PspN4I | GGNNCC | 3 cut(s) | 1104, 1496, 1631 |
| PspPI | GGNCC | 7 cut(s) | 148, 207, 1102, 1629, 2028, 2476, 4453 |
| PspPPI | RGGWCCY | 2 cut(s) | 1102, 1629 |
| PstI | CTGCAG | 1 cut(s) | 4504 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2959, 3362 |
| PsuI | RGATCY | 6 cut(s) | 757, 1494, 1528, 1678, 3445, 4589 |
| PvuII | CAGCTG | 2 cut(s) | 662, 998 |
| RruI | TCGCGA | 1 cut(s) | 1164 |
| RsaI | GTAC | 9 cut(s) | 1290, 1981, 2314, 2506, 3743, 3925, 4114, 4125, 4618 |
| RsaNI | GTAC | 9 cut(s) | 1289, 1980, 2313, 2505, 3742, 3924, 4113, 4124, 4617 |
| RseI | CAYNNNNRTG | 5 cut(s) | 101, 984, 1694, 3432, 4577 |
| SacI | GAGCTC | 1 cut(s) | 4906 |
| SapI | GCTCTTC | 2 cut(s) | 615, 2383 |
| SaqAI | TTAA | 9 cut(s) | 342, 378, 482, 554, 1143, 2510, 2559, 2772, 3173 |
| Sau96I | GGNCC | 7 cut(s) | 148, 207, 1102, 1629, 2028, 2476, 4453 |
| ScaI | AGTACT | 3 cut(s) | 1290, 1981, 3925 |
| ScrFI | CCNGG | 6 cut(s) | 497, 1713, 2106, 3376, 4521, 4773 |
| SduI | GDGCHC | 2 cut(s) | 1596, 4906 |
| SexAI | ACCWGGT | 2 cut(s) | 4519, 4771 |
| SfcI | CTRYAG | 2 cut(s) | 1800, 4500 |
| Sfr274I | CTCGAG | 1 cut(s) | 2177 |
| SgrAI | CRCCGGYG | 1 cut(s) | 241 |
| SinI | GGWCC | 5 cut(s) | 148, 207, 1102, 1629, 2476 |
| SlaI | CTCGAG | 1 cut(s) | 2177 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 101, 984, 1694, 3432, 4577 |
| SmlI | CTYRAG | 6 cut(s) | 248, 341, 1142, 2177, 3449, 4472 |
| SmoI | CTYRAG | 6 cut(s) | 248, 341, 1142, 2177, 3449, 4472 |
| SnaBI | TACGTA | 1 cut(s) | 3812 |
| SpeI | ACTAGT | 1 cut(s) | 4511 |
| SspI | AATATT | 2 cut(s) | 2557, 3109 |
| SstI | GAGCTC | 1 cut(s) | 4906 |
| StyD4I | CCNGG | 6 cut(s) | 495, 1711, 2104, 3374, 4519, 4771 |
| StyI | CCWWGG | 2 cut(s) | 411, 735 |
| TaiI | ACGT | 4 cut(s) | 2914, 3132, 3788, 3814 |
| TaqI | TCGA | 6 cut(s) | 57, 87, 228, 1022, 2178, 3121 |
| TatI | WGTACW | 4 cut(s) | 1288, 1979, 3741, 3923 |
| TauI | GCSGC | 4 cut(s) | 45, 48, 860, 3769 |
| Tru1I | TTAA | 9 cut(s) | 342, 378, 482, 554, 1143, 2510, 2559, 2772, 3173 |
| Tru9I | TTAA | 9 cut(s) | 342, 378, 482, 554, 1143, 2510, 2559, 2772, 3173 |
| TseFI | GTSAC | 3 cut(s) | 1387, 1949, 3055 |
| TseI | GCWGC | 9 cut(s) | 521, 671, 845, 1007, 1187, 1298, 1614, 3878, 4046 |
| Tsp45I | GTSAC | 3 cut(s) | 1387, 1949, 3055 |
| TspGWI | ACGGA | 4 cut(s) | 43, 1148, 1240, 2914 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 4778, 4898 |
| Vha464I | CTTAAG | 2 cut(s) | 341, 1142 |
| VpaK11BI | GGWCC | 5 cut(s) | 148, 207, 1102, 1629, 2476 |
| VspI | ATTAAT | 2 cut(s) | 2559, 2772 |
| XapI | RAATTY | 7 cut(s) | 289, 1250, 1522, 2711, 3302, 3516, 4632 |
| XbaI | TCTAGA | 1 cut(s) | 4883 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 769 |
| XhoI | CTCGAG | 1 cut(s) | 2177 |
| XmiI | GTMKAC | 1 cut(s) | 2977 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2250 |
| ZrmI | AGTACT | 3 cut(s) | 1290, 1981, 3925 |
| Zsp2I | ATGCAT | 5 cut(s) | 645, 892, 981, 2485, 3277 |