Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009068

Physical Location & Seq

Genomic Coordinates Reverse (-)

4854263 .. 4854700

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1059600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTTGAGGGGGGATTGTAAATCTATGAACCCGGAAATGGAAGGAGAATGCGATTTGATTGCCGCGGCAAAGAACATAGTGAGGGCCTTGGGGTCGAAGAAGAACCTTACAGATGGTGAGAGGGAGATTTTGGCTAATCTTGGCACCCAATTGTCCAGCATGATGGGACTCAGTGAGAGAGATGATGAGAATAAGGATAAAAAGATCAGTGAGGTCGAAGATCGCCTTAATTGGATTCAGGAGAGGATCATGAGTTGGGAGGCTGATCAGTCTATGATATGGGATTCGAGCCCGAATGAGTCTCTGGAGTATATGAAGGCTGTGGAGGAGGCTCGGAGATTGATCGAAAGATTGGAAAGGTCGTGTTTGGATAAAAATGATGAAGAGTATGAGGTGTTACATAGAGCTCATGATGTTTCTTCAAACGGCAATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

146

Amino Acids

16.59

Weight (kDa)

4.66

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29400
fragaria_vesca	FvH4_6g46900
malus_domestica	MD09G1066500.v1.1 MD17G1059100.v1.1 MD17G1059400.v1.1 MD17G1059500.v1.1 MD17G1059600.v1.1
prunus_persica	Prupe.3G255100_v2.0.a1 Prupe.3G255100_v2.0.a1
pyrus_communis	pycom111g05580 pycom14g07030 pycom17g05930
rosa_chinensis	RchiOBHm_Chr2g0165871
rosa_laevigata	RLG00000021563
rosa_multiflora	Rmu_co8505119.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085400
rosa_rugosa	Rorug02G0518500
rosa_samantha	Rh2AG584400 Rh2BG596200 Rh2CG567100 Rh2DG606000
rosa_wichuraiana	Rw2G048720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	63, 65
AclWI	GGATC	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	423
AluBI	AGCT	1 cut(s)	407
AluI	AGCT	1 cut(s)	407
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	2 cut(s)	293, 409
Bbv12I	GWGCWC	1 cut(s)	409
BccI	CCATC	2 cut(s)	107, 157
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	1 cut(s)	436
BisI	GCNGC	2 cut(s)	63, 66
BlsI	GCNGC	2 cut(s)	64, 67
Bme1390I	CCNGG	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	63, 87
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	436
BseDI	CCNNGG	2 cut(s)	63, 87
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	409
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	293, 409
Bsp143I	GATC	5 cut(s)	204, 220, 246, 265, 342
BspACI	CCGC	2 cut(s)	63, 65
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	65
BspHI	TCATGA	2 cut(s)	249, 409
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	436
BssECI	CCNNGG	2 cut(s)	63, 87
BssMI	GATC	5 cut(s)	204, 220, 246, 265, 342
BssT1I	CCWWGG	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	170
BstDSI	CCRYGG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	5 cut(s)	207, 223, 249, 268, 345
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	5 cut(s)	204, 220, 246, 265, 342
BstSCI	CCNGG	1 cut(s)	30
BstUI	CGCG	1 cut(s)	65
BstXI	CCANNNNNNTGG	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	178, 214
CciI	TCATGA	2 cut(s)	249, 409
Cfr13I	GGNCC	1 cut(s)	84
Cfr42I	CCGCGG	1 cut(s)	66
CviAII	CATG	3 cut(s)	160, 250, 410
CviJI	RGCY	8 cut(s)	86, 134, 263, 291, 320, 332, 407, 435
CviKI_1	RGCY	8 cut(s)	86, 134, 263, 291, 320, 332, 407, 435
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	5 cut(s)	206, 222, 248, 267, 344
DpnII	GATC	5 cut(s)	204, 220, 246, 265, 342
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Ecl136II	GAGCTC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	2 cut(s)	293, 409
Eco53kI	GAGCTC	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	2 cut(s)	293, 409
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	163, 253, 413
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	3 cut(s)	159, 249, 409
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	63, 66
FriOI	GRGCYC	2 cut(s)	293, 409
Fsp4HI	GCNGC	2 cut(s)	63, 66
FspBI	CTAG	1 cut(s)	436
GluI	GCNGC	2 cut(s)	63, 66
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	3 cut(s)	163, 253, 413
HinfI	GANTC	4 cut(s)	168, 235, 284, 299
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	4 cut(s)	239, 250, 305, 410
HpyAV	CCTTC	2 cut(s)	35, 310
HpyF3I	CTNAG	1 cut(s)	170
Hsp92II	CATG	3 cut(s)	163, 253, 413
Ksp22I	TGATCA	1 cut(s)	265
KspI	CCGCGG	1 cut(s)	66
Kzo9I	GATC	5 cut(s)	204, 220, 246, 265, 342
LpnPI	CCDG	4 cut(s)	45, 169, 224, 290
MaeI	CTAG	1 cut(s)	436
MaeIII	GTNAC	1 cut(s)	396
MalI	GATC	5 cut(s)	206, 222, 248, 267, 344
MboI	GATC	5 cut(s)	204, 220, 246, 265, 342
MboII	GAAGA	5 cut(s)	109, 112, 230, 395, 411
MfeI	CAATTG	1 cut(s)	149
MhlI	GDGCHC	2 cut(s)	293, 409
MluCI	AATT	2 cut(s)	149, 229
MlyI	GAGTC	2 cut(s)	162, 308
MnlI	CCTC	8 cut(s)	75, 114, 205, 237, 253, 319, 322, 385
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	32
MunI	CAATTG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	53
MvnI	CGCG	1 cut(s)	65
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	5 cut(s)	204, 220, 246, 265, 342
NlaIII	CATG	3 cut(s)	163, 253, 413
NlaIV	GGNNCC	1 cut(s)	145
PagI	TCATGA	2 cut(s)	249, 409
PctI	GAATGC	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	235, 284
PkrI	GCNGC	2 cut(s)	64, 67
PleI	GAGTC	2 cut(s)	162, 307
PpsI	GAGTC	2 cut(s)	162, 307
Psp124BI	GAGCTC	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	84
SacI	GAGCTC	1 cut(s)	409
SacII	CCGCGG	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	63, 66
Sau3AI	GATC	5 cut(s)	204, 220, 246, 265, 342
Sau96I	GGNCC	1 cut(s)	84
SchI	GAGTC	2 cut(s)	162, 308
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	2 cut(s)	293, 409
SetI	ASST	5 cut(s)	108, 216, 362, 396, 409
Sfr303I	CCGCGG	1 cut(s)	66
SgrBI	CCGCGG	1 cut(s)	66
Sse9I	AATT	2 cut(s)	149, 229
SsiI	CCGC	2 cut(s)	63, 65
SspMI	CTAG	1 cut(s)	436
SstI	GAGCTC	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	87
TaqI	TCGA	4 cut(s)	95, 216, 287, 345
TasI	AATT	2 cut(s)	149, 229
TauI	GCSGC	2 cut(s)	65, 68
TfiI	GAWTC	2 cut(s)	235, 284
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	178, 214
TspDTI	ATGAA	3 cut(s)	41, 329, 396
TspRI	CASTG	2 cut(s)	178, 214
XspI	CTAG	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.