Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009068

Physical Location & Seq

Genomic Coordinates Forward (+)

76271563 .. 76274503

Gene Structure 2941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G048720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGGGGGATTGTAAACCTGGAAACCCCGAAGTGGAGGTTGGGGAGGACTTGATTGTTGCAGCCAAAAGCATAGCGAGGGCGTTGGGTTCGAAGAAGAACCTTACAAACGGTGAGAGGAAGATTTTGGCTGATCTTGGCACCAAATTGTCTTCCCTGATGACTAATAGGAGCACATTGAATGAGATACAGGTGGAGGACTTTGGTGACATTGAAGTTCGCCTTACTTCGATTCAGGATAAGGTCTTGGGGTGGGAGGCAGATCAGACTATGATATGGGATTCGAGCGCAAATGAGGCGAATGAGTACTTGAACACGGTGGAGGAGGCTCACCAGCTGATTGAAAGTTTGGAGAGTTTGTGTCTGAGTAAAGATGATGAAAAGTATGAGCTGTTACACAAGGCGAATGATGTTCTTCAAACGGCGATGATTAGGCTGGAGGATGAGTTCAGGTACATGCTTGTTCAGAACAGGCAGCCGTGTGCACCGGAGCACATGTCTTTTCGTTCATGCGAAGAGGATGCTGTGGATGAGAACTCATTGATGTCTTTTGGGGATGACTCAATTGAGGACTCATTTCAAAGGGATAGTGTTAGCCGAGCCTCTGAGGATTCCATCATTGACTTGGTTCGCCCAGAAGTTATTCCTGACCTCAGGGGCATTGCAAATATGATGTTCAATTGCAACTATGATCAGGAATGTACCCAAGTTTATACCAACCTCCGAAGGGATGCCTTGGATGAGTGTCTCTCATATCTAGAAGTTCAGAAACTGAGCATTGAGGATGTGCGGAAGATGGAGTGGGTTTCTTTGAATTCCAAAATCAGAAGATGGGTCTGGGTTATGAAGATTTTCGTGCGGATTTATCTGGCTAGCGAGAAGTGGCTCAGTGAACAGATTTTTGAGGAGCTTGGACCTGTTCGGCTAGATTGTTTTGTTGAGGCATCAAAGGCTTCAATACTGCAGCTTCTCAATTTCGCCGAAGCCATGTCTATCGGCCCTCACCAGCCAGAAAAGTTGGTTCGCATTCTTGACATGTATGAGGTGCTAGCGGATGTTCTTCCTGATATAGATGCTTTATACTTTGGTGAGGCTGGTTCTTCTGTAAGCATGGAGTGTCATGATGTCCTGCTGAGATTGGGTGATTCTGTGAAGGCAACAGTTATTGAATTTGAGAATGCCATTGCATCAAACCCTTCCACTAACCCTGTTTCAGGTGGGGGTATACACCCGCTGACTAGATATGTGATGAATTACATGAGGACTCTTACAGACTATGGTCAGACCCTTGATCTGCTTCTCAAGGACTGCGATGAAGGCGATCCCATTTCGTTGTCTCCTGACACTAGTCCAACTAAAGAAGAGGAGAACAAAAGCACTGATTCTTCAGGCAGAAAATCCCCCATGGCTCACCAATTCCTATCATTTGCTTCAAGTCTGGAATCCAATCTTGATGAGAAGTCAAAGTTATATAAGGATGCTTCTTTGCAACACGTCTTTTTGATGAACAATATACATTACATGGCTCAGAAAGTTAAAGGGGCAGAATTAGGCTTATCTTTGGAGATGATTGGATTAGAAAGCACAACAGGAAATTTCAACAGCATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

536

Amino Acids

60.4

Weight (kDa)

4.58

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo70_N	PF20669	76 - 155	2.2e-11	Exocyst complex component Exo70 N-terminal
Exo70_C	PF03081	276 - 526	1.2e-72	Exo70 exocyst complex subunit C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29400
fragaria_vesca	FvH4_6g46900
malus_domestica	MD09G1066500.v1.1 MD17G1059100.v1.1 MD17G1059400.v1.1 MD17G1059500.v1.1 MD17G1059600.v1.1
prunus_persica	Prupe.3G255100_v2.0.a1 Prupe.3G255100_v2.0.a1
pyrus_communis	pycom111g05580 pycom14g07030 pycom17g05930
rosa_chinensis	RchiOBHm_Chr2g0165871
rosa_laevigata	RLG00000021563
rosa_multiflora	Rmu_co8505119.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085400
rosa_rugosa	Rorug02G0518500
rosa_samantha	Rh2AG584400 Rh2BG596200 Rh2CG567100 Rh2DG606000
rosa_wichuraiana	Rw2G048720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	1222
AciI	CCGC	4 cut(s)	787, 856, 1049, 1229
AclWI	GGATC	1 cut(s)	1313
AcsI	RAATTY	3 cut(s)	811, 1166, 1591
AcuI	CTGAAG	1 cut(s)	1368
AfaI	GTAC	3 cut(s)	305, 452, 700
AfiI	CCNNNNNNNGG	3 cut(s)	31, 724, 1211
AflIII	ACRYGT	3 cut(s)	492, 1032, 1489
AhlI	ACTAGT	1 cut(s)	1343
AjiI	CACGTC	1 cut(s)	1492
AjnI	CCWGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AloI	GAACNNNNNNTCC	2 cut(s)	428, 460
AluBI	AGCT	4 cut(s)	334, 388, 907, 964
AluI	AGCT	4 cut(s)	334, 388, 907, 964
Alw21I	GWGCWC	3 cut(s)	173, 484, 492
Alw26I	GTCTC	2 cut(s)	749, 1338
Alw44I	GTGCAC	1 cut(s)	480
AlwI	GGATC	1 cut(s)	1313
AlwNI	CAGNNNCTG	1 cut(s)	769
AoxI	GGCC	1 cut(s)	994
ApaLI	GTGCAC	1 cut(s)	480
ApeKI	GCWGC	3 cut(s)	59, 472, 961
ApoI	RAATTY	3 cut(s)	811, 1166, 1591
Asp700I	GAANNNNTTC	2 cut(s)	639, 848
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	911, 995
AsuHPI	GGTGA	7 cut(s)	122, 215, 320, 992, 1097, 1151, 1400
AsuII	TTCGAA	1 cut(s)	89
AsuNHI	GCTAGC	2 cut(s)	869, 1045
AvaII	GGWCC	1 cut(s)	911
AxyI	CCTNAGG	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	3 cut(s)	173, 484, 492
BbvI	GCAGC	3 cut(s)	71, 484, 973
BccI	CCATC	3 cut(s)	620, 787, 822
BceAI	ACGGC	2 cut(s)	435, 460
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BciT130I	CCWGG	1 cut(s)	18
BclI	TGATCA	1 cut(s)	688
BcoDI	GTCTC	2 cut(s)	749, 1338
BcuI	ACTAGT	1 cut(s)	1343
BfaI	CTAG	6 cut(s)	755, 870, 923, 1046, 1236, 1344
BfmI	CTRYAG	1 cut(s)	959
BisI	GCNGC	3 cut(s)	60, 473, 962
BlsI	GCNGC	3 cut(s)	61, 474, 963
BmcAI	AGTACT	1 cut(s)	305
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	911
BmgBI	CACGTC	1 cut(s)	1492
BmgT120I	GGNCC	2 cut(s)	911, 995
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	6 cut(s)	508, 718, 950, 1060, 1193, 1465
BmtI	GCTAGC	2 cut(s)	873, 1049
BoxI	GACNNNNGTC	2 cut(s)	1275, 1344
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	731, 763
BpmI	CTGGAG	1 cut(s)	455
Bpu14I	TTCGAA	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	1283
BsaJI	CCNNGG	2 cut(s)	732, 1401
BsaWI	WCCGGW	1 cut(s)	484
BsaXI	ACNNNNNCTCC	6 cut(s)	341, 371, 428, 458, 479, 509
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 724, 1211
Bse21I	CCTNAGG	1 cut(s)	650
Bse3DI	GCAATG	2 cut(s)	657, 1179
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	732, 1401
BseGI	GGATG	9 cut(s)	445, 523, 532, 559, 733, 742, 787, 1057, 1480
BseLI	CCNNNNNNNGG	3 cut(s)	31, 724, 1211
BseMI	GCAATG	2 cut(s)	657, 1179
BseMII	CTCAG	7 cut(s)	353, 594, 664, 761, 898, 1121, 1538
BseRI	GAGGAG	3 cut(s)	335, 917, 1376
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	3 cut(s)	71, 484, 973
BshFI	GGCC	1 cut(s)	996
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	3 cut(s)	173, 484, 492
BsiSI	CCGG	1 cut(s)	485
BslI	CCNNNNNNNGG	3 cut(s)	31, 724, 1211
BsmAI	GTCTC	2 cut(s)	749, 1338
BsmI	GAATGC	2 cut(s)	1023, 1180
BsnI	GGCC	1 cut(s)	996
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	3 cut(s)	173, 484, 492
Bsp143I	GATC	5 cut(s)	130, 259, 688, 1288, 1318
Bsp19I	CCATGG	1 cut(s)	1401
BspACI	CCGC	4 cut(s)	787, 856, 1049, 1229
BspANI	GGCC	1 cut(s)	996
BspCNI	CTCAG	7 cut(s)	354, 595, 663, 762, 897, 1122, 1537
BspHI	TCATGA	1 cut(s)	1117
BspLI	GGNNCC	1 cut(s)	139
BspMAI	CTGCAG	1 cut(s)	963
BspOI	GCTAGC	2 cut(s)	873, 1049
BspPI	GGATC	1 cut(s)	1313
BspT104I	TTCGAA	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	137
BsrDI	GCAATG	2 cut(s)	657, 1179
BssECI	CCNNGG	2 cut(s)	732, 1401
BssMI	GATC	5 cut(s)	130, 259, 688, 1288, 1318
BssNAI	GTATAC	1 cut(s)	1223
BssT1I	CCWWGG	2 cut(s)	732, 1401
Bst1107I	GTATAC	1 cut(s)	1223
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	3 cut(s)	110, 316, 1159
Bst6I	CTCTTC	2 cut(s)	507, 1353
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	871, 1047, 1604
BstDEI	CTNAG	7 cut(s)	362, 603, 650, 770, 884, 1130, 1524
BstDSI	CCRYGG	1 cut(s)	1401
BstENI	CCTNNNNNAGG	1 cut(s)	1209
BstF5I	GGATG	9 cut(s)	445, 523, 532, 559, 733, 742, 787, 1057, 1480
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	5 cut(s)	133, 262, 691, 1291, 1321
BstMAI	GTCTC	2 cut(s)	749, 1338
BstMBI	GATC	5 cut(s)	130, 259, 688, 1288, 1318
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 947, 1314
BstNI	CCWGG	1 cut(s)	18
BstNSI	RCATGY	4 cut(s)	457, 496, 1036, 1606
BstPAI	GACNNNNGTC	2 cut(s)	1275, 1344
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	959
BstSLI	GKGCMC	1 cut(s)	484
BstV1I	GCAGC	3 cut(s)	71, 484, 973
BstV2I	GAAGAC	1 cut(s)	141
BstZ17I	GTATAC	1 cut(s)	1223
Bsu36I	CCTNAGG	1 cut(s)	650
BsuRI	GGCC	1 cut(s)	996
BtgI	CCRYGG	1 cut(s)	1401
BtgZI	GCGATG	2 cut(s)	437, 1323
BtrI	CACGTC	1 cut(s)	1492
BtsCI	GGATG	9 cut(s)	445, 523, 532, 559, 733, 742, 787, 1057, 1480
BtsIMutI	CAGTG	2 cut(s)	892, 1374
Cac8I	GCNNGC	3 cut(s)	871, 1047, 1604
CaiI	CAGNNNCTG	1 cut(s)	769
CciI	TCATGA	1 cut(s)	1117
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	911, 995
Csp6I	GTAC	3 cut(s)	304, 451, 699
CviQI	GTAC	3 cut(s)	304, 451, 699
DdeI	CTNAG	7 cut(s)	362, 603, 650, 770, 884, 1130, 1524
DpnI	GATC	5 cut(s)	132, 261, 690, 1290, 1320
DpnII	GATC	5 cut(s)	130, 259, 688, 1288, 1318
Eam1104I	CTCTTC	2 cut(s)	507, 1353
EarI	CTCTTC	2 cut(s)	507, 1353
Eco130I	CCWWGG	2 cut(s)	732, 1401
Eco47I	GGWCC	1 cut(s)	911
Eco57I	CTGAAG	1 cut(s)	1368
Eco81I	CCTNAGG	1 cut(s)	650
EcoNI	CCTNNNNNAGG	1 cut(s)	1209
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	732, 1401
ErhI	CCWWGG	2 cut(s)	732, 1401
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FauI	CCCGC	1 cut(s)	1236
FbaI	TGATCA	1 cut(s)	688
FblI	GTMKAC	1 cut(s)	1222
Fnu4HI	GCNGC	3 cut(s)	60, 473, 962
FokI	GGATG	9 cut(s)	452, 530, 539, 566, 740, 749, 794, 1064, 1487
Fsp4HI	GCNGC	3 cut(s)	60, 473, 962
FspBI	CTAG	6 cut(s)	755, 870, 923, 1046, 1236, 1344
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	3 cut(s)	60, 473, 962
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	996
HapII	CCGG	1 cut(s)	485
HhaI	GCGC	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	9 cut(s)	229, 278, 557, 569, 608, 1142, 1261, 1379, 1439
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	7 cut(s)	122, 215, 320, 992, 1097, 1151, 1400
Hpy166II	GTNNAC	4 cut(s)	14, 482, 890, 1223
Hpy188I	TCNGA	9 cut(s)	264, 363, 465, 604, 722, 765, 824, 1281, 1527
Hpy8I	GTNNAC	4 cut(s)	14, 482, 890, 1223
HpyAV	CCTTC	4 cut(s)	717, 1144, 1203, 1307
HpyCH4III	ACNGT	3 cut(s)	110, 316, 1159
HpyCH4IV	ACGT	1 cut(s)	1491
HpyCH4V	TGCA	7 cut(s)	59, 482, 662, 681, 961, 1184, 1486
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 947, 1314
HpyF3I	CTNAG	7 cut(s)	362, 603, 650, 770, 884, 1130, 1524
HpySE526I	ACGT	1 cut(s)	1491
HspAI	GCGC	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	5 cut(s)	130, 259, 688, 1288, 1318
LmnI	GCTCC	3 cut(s)	168, 487, 904
Lsp1109I	GCAGC	3 cut(s)	71, 484, 973
LweI	GCATC	6 cut(s)	508, 718, 950, 1060, 1193, 1465
MaeI	CTAG	6 cut(s)	755, 870, 923, 1046, 1236, 1344
MaeII	ACGT	1 cut(s)	1491
MaeIII	GTNAC	2 cut(s)	203, 390
MalI	GATC	5 cut(s)	132, 261, 690, 1290, 1320
MboI	GATC	5 cut(s)	130, 259, 688, 1288, 1318
MfeI	CAATTG	2 cut(s)	561, 676
MhlI	GDGCHC	3 cut(s)	173, 484, 492
MlyI	GAGTC	3 cut(s)	551, 563, 1255
MmeI	TCCRAC	1 cut(s)	1373
MroXI	GAANNNNTTC	2 cut(s)	639, 848
MseI	TTAA	1 cut(s)	1533
MspA1I	CMGCKG	2 cut(s)	334, 1231
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	18
MunI	CAATTG	2 cut(s)	561, 676
Mva1269I	GAATGC	2 cut(s)	1023, 1180
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	293, 947, 1314
NcoI	CCATGG	1 cut(s)	1401
NdeII	GATC	5 cut(s)	130, 259, 688, 1288, 1318
NheI	GCTAGC	2 cut(s)	869, 1045
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	620
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	4 cut(s)	457, 496, 1036, 1606
NspV	TTCGAA	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	1606
PagI	TCATGA	1 cut(s)	1117
PciI	ACATGT	2 cut(s)	492, 1032
PctI	GAATGC	2 cut(s)	1023, 1180
PdmI	GAANNNNTTC	2 cut(s)	639, 848
PfeI	GAWTC	6 cut(s)	229, 278, 608, 1142, 1379, 1439
PkrI	GCNGC	3 cut(s)	61, 474, 963
PleI	GAGTC	3 cut(s)	551, 563, 1255
PpsI	GAGTC	3 cut(s)	551, 563, 1255
PscI	ACATGT	2 cut(s)	492, 1032
PshAI	GACNNNNGTC	2 cut(s)	1275, 1344
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	2 cut(s)	911, 995
PstI	CTGCAG	1 cut(s)	963
PstNI	CAGNNNCTG	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	3 cut(s)	305, 452, 700
RsaNI	GTAC	3 cut(s)	304, 451, 699
SaqAI	TTAA	1 cut(s)	1533
SatI	GCNGC	3 cut(s)	60, 473, 962
Sau3AI	GATC	5 cut(s)	130, 259, 688, 1288, 1318
Sau96I	GGNCC	2 cut(s)	911, 995
ScaI	AGTACT	1 cut(s)	305
SchI	GAGTC	3 cut(s)	551, 563, 1255
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	3 cut(s)	173, 484, 492
SfaNI	GCATC	6 cut(s)	508, 718, 950, 1060, 1193, 1465
SfcI	CTRYAG	1 cut(s)	959
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	1 cut(s)	911
SmlI	CTYRAG	1 cut(s)	1298
SmoI	CTYRAG	1 cut(s)	1298
SpeI	ACTAGT	1 cut(s)	1343
SphI	GCATGC	1 cut(s)	1606
SsiI	CCGC	4 cut(s)	787, 856, 1049, 1229
SspMI	CTAG	6 cut(s)	755, 870, 923, 1046, 1236, 1344
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	2 cut(s)	732, 1401
TaaI	ACNGT	3 cut(s)	110, 316, 1159
TaiI	ACGT	1 cut(s)	1494
TaqI	TCGA	3 cut(s)	89, 227, 281
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	6 cut(s)	229, 278, 608, 1142, 1379, 1439
Tru1I	TTAA	1 cut(s)	1533
Tru9I	TTAA	1 cut(s)	1533
TscAI	CASTG	2 cut(s)	892, 1381
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	3 cut(s)	59, 472, 961
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	6 cut(s)	390, 495, 857, 1262, 1326, 1517
TspRI	CASTG	2 cut(s)	892, 1381
VneI	GTGCAC	1 cut(s)	480
VpaK11BI	GGWCC	1 cut(s)	911
XagI	CCTNNNNNAGG	1 cut(s)	1209
XapI	RAATTY	3 cut(s)	811, 1166, 1591
XbaI	TCTAGA	1 cut(s)	754
XceI	RCATGY	4 cut(s)	457, 496, 1036, 1606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XmiI	GTMKAC	1 cut(s)	1222
XmnI	GAANNNNTTC	2 cut(s)	639, 848
XspI	CTAG	6 cut(s)	755, 870, 923, 1046, 1236, 1344
ZrmI	AGTACT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.