Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009068

Physical Location & Seq

Genomic Coordinates Forward (+)

6988892 .. 6989787

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g07030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGATACTCGTAAAAGAGAGCGGCTTGAAGGTTTTGGCTTTCACTCTAAAGGCACCTTCAAGAAGAACAAGCAAGCGGGAGAAGAGGGAAAGTATCATAGGGGGGAGATCCAATTGGGTGTTGAGGGTGGTGGGAACTTGACCCAATTGTCCAGCATGATGGGACTCAGTGAGAGAAATGATGAGAATGAGGATGAGAAGATCAGTGAGGTCGAAGATCGCCTTAATTCGATTCAGGAGAGGATCATGAGTTGGGAGGCTGATCAGTCTATGATATGGGATTCGAGCCCGAATGAGTCTCTGGAGTATATGAAGGCTGTGGAGGAGGCTCGGAGATTGATCGAAAGATTGGAAAGATCGTGTTTGGATAAACATGATGAAGAATGTGAGGTGTTACATAGAGCTCACGATGTTCTTCAAACGGCAATGGCTAGGCTGGAGGAAGAGTTCAAGTACATGCTTGTTCAGAACAGGCAACCCTTTGAACCCGAGCACATGTCTTTTCGTTCGAGTGAGGATGATATTGCGGATGGAAGCTCGATAAACTCTTTTGGGGATGATTCGATTGAGGACTCACTTCAAAGGGATAGTGTCAGCAGAGCGTCGGAGGAAGTCATCATTGATTTGGTTCATCCGGATATAGTTCCTGAGCTCAGAGGCATTGCAAATTTGATGTTCAATTGCAATTATGATCAGGAGCCGTCACTCAAAAACAACCAGAACCCGCCGTCCCCACTCCTACGCCAAGCTCAGATTTGCAGAGACTGGAAACTGGAAAAATTGGGAGATTTGCAGAGATTGGAAAAAATGAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

273

Amino Acids

31.52

Weight (kDa)

4.8

Isoelectric Point (pI)

67.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29400
fragaria_vesca	FvH4_6g46900
malus_domestica	MD09G1066500.v1.1 MD17G1059100.v1.1 MD17G1059400.v1.1 MD17G1059500.v1.1 MD17G1059600.v1.1
prunus_persica	Prupe.3G255100_v2.0.a1 Prupe.3G255100_v2.0.a1
pyrus_communis	pycom111g05580 pycom14g07030 pycom17g05930
rosa_chinensis	RchiOBHm_Chr2g0165871
rosa_laevigata	RLG00000021563
rosa_multiflora	Rmu_co8505119.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085400
rosa_rugosa	Rorug02G0518500
rosa_samantha	Rh2AG584400 Rh2BG596200 Rh2CG567100 Rh2DG606000
rosa_wichuraiana	Rw2G048720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	53
AccBSI	CCGCTC	1 cut(s)	22
AccIII	TCCGGA	1 cut(s)	634
AciI	CCGC	4 cut(s)	22, 77, 527, 725
AclWI	GGATC	2 cut(s)	103, 251
AcsI	RAATTY	1 cut(s)	667
AfaI	GTAC	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	7 cut(s)	29, 61, 419, 451, 485, 581, 679
AloI	GAACNNNNNNTCC	4 cut(s)	431, 463, 713, 745
AluBI	AGCT	4 cut(s)	404, 537, 652, 749
AluI	AGCT	4 cut(s)	404, 537, 652, 749
Alw21I	GWGCWC	3 cut(s)	406, 495, 654
Alw26I	GTCTC	2 cut(s)	303, 756
AlwI	GGATC	2 cut(s)	103, 251
AlwNI	CAGNNNCTG	1 cut(s)	765
Ama87I	CYCGRG	1 cut(s)	488
Aor13HI	TCCGGA	1 cut(s)	634
ApoI	RAATTY	1 cut(s)	667
AvaI	CYCGRG	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	3 cut(s)	290, 406, 654
Bbv12I	GWGCWC	3 cut(s)	406, 495, 654
BccI	CCATC	2 cut(s)	154, 524
BceAI	ACGGC	3 cut(s)	438, 685, 712
BclI	TGATCA	2 cut(s)	262, 691
BcoDI	GTCTC	2 cut(s)	303, 756
BfaI	CTAG	1 cut(s)	432
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
BmeT110I	CYCGRG	1 cut(s)	488
BmiI	GGNNCC	2 cut(s)	55, 699
BpmI	CTGGAG	2 cut(s)	323, 458
Bpu10I	CCTNAGC	1 cut(s)	648
BsaWI	WCCGGW	1 cut(s)	634
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bse1I	ACTGG	2 cut(s)	770, 777
Bse3DI	GCAATG	2 cut(s)	432, 660
BseAI	TCCGGA	1 cut(s)	634
BseGI	GGATG	5 cut(s)	199, 523, 535, 562, 631
BseMI	GCAATG	2 cut(s)	432, 660
BseMII	CTCAG	4 cut(s)	181, 639, 667, 764
BseNI	ACTGG	2 cut(s)	770, 777
BseRI	GAGGAG	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	53
BsiHKAI	GWGCWC	3 cut(s)	406, 495, 654
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	635
BslFI	GGGAC	2 cut(s)	177, 715
BsmAI	GTCTC	2 cut(s)	303, 756
BsmFI	GGGAC	2 cut(s)	177, 715
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	4 cut(s)	290, 406, 495, 654
Bsp13I	TCCGGA	1 cut(s)	634
Bsp143I	GATC	8 cut(s)	108, 201, 217, 243, 262, 339, 356, 691
BspACI	CCGC	4 cut(s)	22, 77, 527, 725
BspCNI	CTCAG	4 cut(s)	180, 640, 666, 763
BspEI	TCCGGA	1 cut(s)	634
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	55, 699
BspPI	GGATC	2 cut(s)	103, 251
BspT107I	GGYRCC	1 cut(s)	53
BsrBI	CCGCTC	1 cut(s)	22
BsrDI	GCAATG	2 cut(s)	432, 660
BsrI	ACTGG	2 cut(s)	770, 777
BssMI	GATC	8 cut(s)	108, 201, 217, 243, 262, 339, 356, 691
Bst6I	CTCTTC	2 cut(s)	78, 438
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	4 cut(s)	167, 648, 653, 750
BstF5I	GGATG	5 cut(s)	199, 523, 535, 562, 631
BstKTI	GATC	8 cut(s)	111, 204, 220, 246, 265, 342, 359, 694
BstMAI	GTCTC	2 cut(s)	303, 756
BstMBI	GATC	8 cut(s)	108, 201, 217, 243, 262, 339, 356, 691
BstNSI	RCATGY	2 cut(s)	460, 499
BstX2I	RGATCY	1 cut(s)	108
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	108
BtsCI	GGATG	5 cut(s)	199, 523, 535, 562, 631
BtsIMutI	CAGTG	2 cut(s)	175, 211
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	765
CciI	TCATGA	1 cut(s)	246
CseI	GACGC	1 cut(s)	591
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	5 cut(s)	157, 247, 374, 457, 496
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	4 cut(s)	167, 648, 653, 750
DpnI	GATC	8 cut(s)	110, 203, 219, 245, 264, 341, 358, 693
DpnII	GATC	8 cut(s)	108, 201, 217, 243, 262, 339, 356, 691
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	78, 438
EarI	CTCTTC	2 cut(s)	78, 438
Ecl136II	GAGCTC	2 cut(s)	404, 652
Eco24I	GRGCYC	3 cut(s)	290, 406, 654
Eco53kI	GAGCTC	2 cut(s)	404, 652
Eco88I	CYCGRG	1 cut(s)	488
EcoICRI	GAGCTC	2 cut(s)	404, 652
EcoT38I	GRGCYC	3 cut(s)	290, 406, 654
FaeI	CATG	5 cut(s)	160, 250, 377, 460, 499
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	2 cut(s)	177, 715
FatI	CATG	5 cut(s)	156, 246, 373, 456, 495
FauI	CCCGC	2 cut(s)	70, 732
FbaI	TGATCA	2 cut(s)	262, 691
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	5 cut(s)	206, 530, 542, 569, 618
FriOI	GRGCYC	3 cut(s)	290, 406, 654
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	1 cut(s)	23
GsuI	CTGGAG	2 cut(s)	323, 458
HapII	CCGG	1 cut(s)	635
HgaI	GACGC	1 cut(s)	591
Hin1II	CATG	5 cut(s)	160, 250, 377, 460, 499
HinfI	GANTC	6 cut(s)	165, 232, 281, 296, 560, 572
HpaII	CCGG	1 cut(s)	635
Hpy188I	TCNGA	5 cut(s)	333, 468, 607, 656, 753
Hpy188III	TCNNGA	8 cut(s)	61, 236, 247, 302, 407, 635, 647, 695
Hpy99I	CGWCG	1 cut(s)	607
HpyAV	CCTTC	3 cut(s)	23, 67, 307
HpyCH4V	TGCA	4 cut(s)	665, 684, 759, 793
HpyF3I	CTNAG	4 cut(s)	167, 648, 653, 750
Hsp92II	CATG	5 cut(s)	160, 250, 377, 460, 499
Kpn2I	TCCGGA	1 cut(s)	634
Ksp22I	TGATCA	2 cut(s)	262, 691
Kzo9I	GATC	8 cut(s)	108, 201, 217, 243, 262, 339, 356, 691
LmnI	GCTCC	1 cut(s)	697
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	393, 702
MalI	GATC	8 cut(s)	110, 203, 219, 245, 264, 341, 358, 693
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	8 cut(s)	108, 201, 217, 243, 262, 339, 356, 691
MboII	GAAGA	7 cut(s)	76, 95, 211, 227, 392, 407, 455
MfeI	CAATTG	3 cut(s)	113, 146, 679
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	4 cut(s)	290, 406, 495, 654
MluCI	AATT	8 cut(s)	113, 146, 226, 667, 679, 685, 779, 814
MlyI	GAGTC	3 cut(s)	159, 305, 566
MmeI	TCCRAC	1 cut(s)	585
MroI	TCCGGA	1 cut(s)	634
MseI	TTAA	1 cut(s)	225
MspI	CCGG	1 cut(s)	635
MunI	CAATTG	3 cut(s)	113, 146, 679
NdeII	GATC	8 cut(s)	108, 201, 217, 243, 262, 339, 356, 691
NlaIII	CATG	5 cut(s)	160, 250, 377, 460, 499
NlaIV	GGNNCC	2 cut(s)	55, 699
NmuCI	GTSAC	1 cut(s)	702
NspI	RCATGY	2 cut(s)	460, 499
PagI	TCATGA	1 cut(s)	246
PciI	ACATGT	1 cut(s)	495
PfeI	GAWTC	3 cut(s)	232, 281, 560
PkrI	GCNGC	1 cut(s)	24
PleI	GAGTC	3 cut(s)	159, 304, 566
PpsI	GAGTC	3 cut(s)	159, 304, 566
PscI	ACATGT	1 cut(s)	495
Psp124BI	GAGCTC	2 cut(s)	406, 654
PspN4I	GGNNCC	2 cut(s)	55, 699
PstNI	CAGNNNCTG	1 cut(s)	765
PsuI	RGATCY	1 cut(s)	108
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SacI	GAGCTC	2 cut(s)	406, 654
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	8 cut(s)	108, 201, 217, 243, 262, 339, 356, 691
SchI	GAGTC	3 cut(s)	159, 305, 566
SduI	GDGCHC	4 cut(s)	290, 406, 495, 654
SetI	ASST	8 cut(s)	34, 59, 213, 393, 406, 539, 654, 751
Sse9I	AATT	8 cut(s)	113, 146, 226, 667, 679, 685, 779, 814
SsiI	CCGC	4 cut(s)	22, 77, 527, 725
SspMI	CTAG	1 cut(s)	432
SstI	GAGCTC	2 cut(s)	406, 654
TaqI	TCGA	7 cut(s)	213, 230, 284, 342, 509, 539, 563
TasI	AATT	8 cut(s)	113, 146, 226, 667, 679, 685, 779, 814
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	3 cut(s)	232, 281, 560
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	175, 211
TseFI	GTSAC	1 cut(s)	702
Tsp45I	GTSAC	1 cut(s)	702
TspDTI	ATGAA	3 cut(s)	326, 393, 620
TspRI	CASTG	2 cut(s)	175, 211
XapI	RAATTY	1 cut(s)	667
XceI	RCATGY	2 cut(s)	460, 499
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.