Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009264

Physical Location & Seq

Genomic Coordinates Reverse (-)

9690370 .. 9696630

Gene Structure 6261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1113200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2421 bp

ATGCACAGGCTCCCACGACGCTCCGTCTCCGCCATCCTGCGCCACGGCGGCGCACGGTACCGGAACTCAGCGGCTCCTATCTCCTGCGCTTCTACCCACTGCAGTTCGGTGGGAGGGACTGATAGGCAAGTCAGATGGCACTCAGTGTTGGTCCCTGGGAAGTGTAACACTACCAATTCCTCAACTTTTAACTTGAAAAATGGCCTGTATTTCGGCAATCGGTATGAGTCCACTGCTGCAGCCTCTTGCGCGTCGGCCGCACCTCCCGCTGAGACGTACGAGTATCAAGCTGAGGTCAGTCGCCTCATGGACCTCATCGTTAACAGCTTGTACAGTAACAAGGAAGTTTTTCTTCGAGAGCTTATTAGCAATGCAAGTGATGCATTGGACAAACTTCGTTTCCTCAGTGTCACACAGCCTGATCTTTTGAAGGGTGGAGGTGATCTAGATATCCGTATCCAGACTGATAAAGACAATGGGATCATCAATATCATTGATTCTGGAATTGGTATGACTCGGGAAGAGCTTATTGACTGTCTGGGAACAATTGCACAAAGTGGAACATCAAAATTCTTGAAAGCATTGAAGGATAGTAAAGATGCTGGCAGTGATAACAATCTGATTGGTCAGTTTGGTGTTGGCTTTTATTCAGCATTCCTTGTTGCAGATCGGATTGTTGTCTCCACAAAGAGCCCAAAGTCCGACAAACAATATGTATGGCAAGGAGAGGTAAATGCTAGCTCTTATACAATTCAGGAGGAGACTGATCCCGAGAAGCTTATTCCCAGAGGAACCCGCATCACCTTGTATCTCAAGTGCGATGACAAAGGTTTTGCTCATCCAGAACGAATTGAAAAGCTTGTGAAAAACTATTCACAATTTGTTTCCTTTCCTATATACACTTGGAAGGAAAAAGGATTCACTAAAGAGGTTGAGGTAGATGAAGATCCAGCTGAATCCAAAACGGATGAACAAGATGAGAAAACCGAGAAAAAGAAGAAAACGAAGACTGTTGTTGAGAAATATTGGGATTGGGATCTCACTAATGAGACACAACCAATATGGCTTCGCAATCCTAAGGAAGTCAATACAGAGGATTACAATGAGTTCTACAAGAAAACTTTCAATGAATACTTGGATCCACTAGCATCTTCGCACTTCACAACTGAGGGTGAAGTAGAGTTCAGGTCTATTCTCTATGTCCCAGCTGTTCCTCCCATGGGAAAGGATGACATAGTCAATCCCAAGACGAAAAATATAAGGCTTTATGTGAAACGGGTGTTCATTTCAGATGACTTTGATGGAGAACTGTTCCCACGATATTTAAGCTTCATCAAAGGTGTTGTGGACTCGAATGATCTTCCACTCAATGTCTCACGTGAAATACTTCAGGAGAGTCGTATTGTACGGATTATGAGGAAGCGCTTGGTTCGTAAGGCCTTTGACATGATCCTTGGAATATCCATGAGCGAGAACAGAGAAGATTATGAAAAGTTCTGGGAAAATTTTGGCAAACACTTGAAACTGGGTTGCATTGAAGATCGTGAAAATCATAAGCGTATTGCTCCGTTGCTTAGATTTTTCTCTTCCCAGAGTGAGGATGTGATGATCAGCTTGGATGAATATCTTGAAAACATGAAACTTGAGCAGAAGGATATCTATTACATTGCTTCAGACAGTGTGACAAGTGCCAGGAATACACCATTCCTGGAGAAACTTCTTGAGAAGGACTTCGAAGTGTTGTACTTAGTTGATCCCATTGATGAGGTTGCCATCCAGAACCTTAAATCATACAAGGAGAAGAATTTCATTGATATTAGCAAGGAAGAACTGGATCTAGGGGATAGGAATGAGGAAAAAGAAAAGGAGATTAAGCAGGAATATGGCCAAACATGTGATTGGATTAAGAAGCGTTTGGGCGACAAGGTTGCCAGTGTTCAAATTTCAAACCGTCTTAGCTCGTCACCTTGTGTTCTTGTCTCAGGGAAGTTTGGCTGGTCTGCCAACATGGAGAGGTTGATGAAGGCACAAACTGTTGGTGATACCTCTAGCCTGGAGTATATGAGAGGCAGGAGGGTGTTTGAGATTAATCCCGAGCACCCGATCATTAAAAACTTAAATGCTGCAAGCAAGATCAACCCGGATGATGAGGATGCTATTAGAGCTATTGAACTTCTGTACGATACAGCATTGGTGTCAAGCGGTTTTACTCCTGATAATCCAGCAGAGCTGGGTGGAAAGATATACAAGATGATGAGTCTGGCGCTCTCTGGGAAATGGTCCACACCTGCTGCCGAAATTCAGCAGCCCGAACCCCAACAACACAACCCCGAGATACTCGAGGCCGAGGTTCGGTACAACCACCCCGAGACGCTAGAGGCCGAGGTGGTTGAGCCTGTTGAAGCCGGCAGTCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

807

Amino Acids

91.69

Weight (kDa)

5.34

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	115 - 246	9.5e-08	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	115 - 272	8e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90	PF00183	278 - 769	1e-191	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07770 AT3G07770 AT3G07770
fragaria_vesca	FvH4_6g41100 FvH4_6g41100
malus_domestica	MD09G1122200.v1.1 MD17G1113200.v1.1
prunus_persica	Prupe.3G201400_v2.0.a1
pyrus_communis	pycom09g04650 pycom17g10480
rosa_chinensis	RchiOBHm_Chr2g0156661
rosa_laevigata	RLG00000020929
rosa_multiflora	Rmu_sc0001130.1_g000001 Rmu_sc0018228.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092860
rosa_rugosa	Rorug02G0455200
rosa_samantha	Rh2AG520800 Rh2BG534000 Rh2CG505800 Rh2DG542800
rosa_wichuraiana	Rw0G013720 Rw2G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2296
Acc36I	ACCTGC	1 cut(s)	2296
Acc65I	GGTACC	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	57
AccII	CGCG	1 cut(s)	251
AciI	CCGC	7 cut(s)	30, 48, 71, 258, 267, 796, 2202
AclWI	GGATC	9 cut(s)	488, 761, 941, 1044, 1133, 1146, 1444, 1748, 1842
AcoI	YGGCCR	2 cut(s)	255, 1885
AcsI	RAATTY	5 cut(s)	569, 1504, 1804, 1941, 2298
AcuI	CTGAAG	2 cut(s)	1373, 1656
AcvI	CACGTG	1 cut(s)	1379
AdeI	CACNNNGTG	3 cut(s)	145, 557, 1970
AfaI	GTAC	7 cut(s)	59, 278, 332, 1407, 1745, 2180, 2357
AfeI	AGCGCT	1 cut(s)	1424
AfiI	CCNNNNNNNGG	3 cut(s)	1220, 1597, 2352
AflIII	ACRYGT	1 cut(s)	1892
AhdI	GACNNNNNGTC	1 cut(s)	23
AjnI	CCWGG	4 cut(s)	154, 1691, 1707, 2052
Alw21I	GWGCWC	1 cut(s)	2100
Alw26I	GTCTC	8 cut(s)	31, 266, 685, 755, 1043, 1378, 1984, 2363
AlwI	GGATC	9 cut(s)	488, 761, 941, 1044, 1133, 1146, 1444, 1748, 1842
Ama87I	CYCGRG	6 cut(s)	516, 770, 2093, 2330, 2339, 2366
Aor51HI	AGCGCT	1 cut(s)	1424
AoxI	GGCC	6 cut(s)	202, 255, 1437, 1885, 2343, 2379
ApeKI	GCWGC	5 cut(s)	236, 239, 2123, 2291, 2305
ApoI	RAATTY	5 cut(s)	569, 1504, 1804, 1941, 2298
ArsI	GACNNNNNNTTYG	2 cut(s)	815, 847
AseI	ATTAAT	1 cut(s)	2088
Asp700I	GAANNNNTTC	5 cut(s)	348, 1121, 1386, 1730, 1805
Asp718I	GGTACC	1 cut(s)	57
AspLEI	GCGC	6 cut(s)	42, 53, 89, 251, 1425, 2266
AspS9I	GGNCC	3 cut(s)	151, 310, 2280
AsuC2I	CCSGG	1 cut(s)	2141
AsuHPI	GGTGA	5 cut(s)	452, 793, 1184, 1956, 2051
AsuII	TTCGAA	1 cut(s)	1734
AsuNHI	GCTAGC	1 cut(s)	737
AvaI	CYCGRG	6 cut(s)	516, 770, 2093, 2330, 2339, 2366
AvaII	GGWCC	3 cut(s)	151, 310, 2280
AxyI	CCTNAGG	1 cut(s)	1077
BalI	TGGCCA	1 cut(s)	1887
BamHI	GGATCC	1 cut(s)	1138
BanI	GGYRCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	695
BbrPI	CACGTG	1 cut(s)	1379
BbsI	GAAGAC	1 cut(s)	1013
Bbv12I	GWGCWC	1 cut(s)	2100
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	5 cut(s)	223, 251, 2110, 2278, 2317
BccI	CCATC	4 cut(s)	41, 129, 1295, 1781
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	1910, 1944
BciT130I	CCWGG	4 cut(s)	156, 1693, 1709, 2054
BciVI	GTATCC	1 cut(s)	467
BclI	TGATCA	1 cut(s)	1608
BcnI	CCSGG	1 cut(s)	2141
BcoDI	GTCTC	8 cut(s)	31, 266, 685, 755, 1043, 1378, 1984, 2363
BfaI	CTAG	6 cut(s)	446, 738, 1145, 1838, 2049, 2375
BfmI	CTRYAG	2 cut(s)	100, 237
BfoI	RGCGCY	2 cut(s)	1426, 2267
BfuAI	ACCTGC	1 cut(s)	2296
BfuI	GTATCC	1 cut(s)	467
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	8 cut(s)	49, 72, 237, 240, 258, 2124, 2292, 2306
BlsI	GCNGC	8 cut(s)	50, 73, 238, 241, 259, 2125, 2293, 2307
Bme1390I	CCNGG	5 cut(s)	156, 1693, 1709, 2054, 2141
Bme18I	GGWCC	3 cut(s)	151, 310, 2280
BmeRI	GACNNNNNGTC	1 cut(s)	23
BmeT110I	CYCGRG	6 cut(s)	516, 770, 2093, 2330, 2339, 2366
BmgT120I	GGNCC	3 cut(s)	151, 310, 2280
BmiI	GGNNCC	6 cut(s)	11, 59, 75, 153, 793, 1140
BmrFI	CCNGG	5 cut(s)	156, 1693, 1709, 2054, 2141
BmrI	ACTGGG	1 cut(s)	1535
BmsI	GCATC	5 cut(s)	370, 589, 807, 1157, 2143
BmtI	GCTAGC	1 cut(s)	741
BmuI	ACTGGG	1 cut(s)	1535
BpiI	GAAGAC	1 cut(s)	1013
BpmI	CTGGAG	2 cut(s)	1730, 2075
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	1734
BpuEI	CTTGAG	3 cut(s)	797, 1664, 1742
BpuMI	CCSGG	1 cut(s)	2141
BsaAI	YACGTR	1 cut(s)	1379
BsaBI	GATNNNNATC	4 cut(s)	615, 945, 1035, 1623
BsaJI	CCNNGG	7 cut(s)	43, 154, 155, 1218, 1453, 2346, 2382
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	3 cut(s)	1220, 1597, 2352
Bse118I	RCCGGY	1 cut(s)	2405
Bse1I	ACTGG	3 cut(s)	1530, 1836, 1932
Bse21I	CCTNAGG	1 cut(s)	1077
Bse3DI	GCAATG	2 cut(s)	376, 1665
Bse8I	GATNNNNATC	4 cut(s)	615, 945, 1035, 1623
BseBI	CCWGG	4 cut(s)	156, 1693, 1709, 2054
BseDI	CCNNGG	7 cut(s)	43, 154, 155, 1218, 1453, 2346, 2382
BseGI	GGATG	9 cut(s)	33, 838, 973, 1234, 1606, 1624, 1773, 2149, 2158
BseJI	GATNNNNATC	4 cut(s)	615, 945, 1035, 1623
BseLI	CCNNNNNNNGG	3 cut(s)	1220, 1597, 2352
BseMI	GCAATG	2 cut(s)	376, 1665
BseMII	CTCAG	7 cut(s)	81, 156, 261, 282, 418, 1158, 1995
BseNI	ACTGG	3 cut(s)	1530, 1836, 1932
BseRI	GAGGAG	1 cut(s)	773
BseX3I	CGGCCG	1 cut(s)	255
BseXI	GCAGC	5 cut(s)	223, 251, 2110, 2278, 2317
BseYI	CCCAGC	2 cut(s)	1204, 2230
Bsh1236I	CGCG	1 cut(s)	251
Bsh1285I	CGRYCG	1 cut(s)	258
BshFI	GGCC	6 cut(s)	204, 257, 1439, 1887, 2345, 2381
BshNI	GGYRCC	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	2100
BsiHKCI	CYCGRG	6 cut(s)	516, 770, 2093, 2330, 2339, 2366
BsiSI	CCGG	3 cut(s)	61, 2141, 2406
BsiWI	CGTACG	1 cut(s)	276
BslFI	GGGAC	3 cut(s)	130, 137, 1187
BslI	CCNNNNNNNGG	3 cut(s)	1220, 1597, 2352
BsmAI	GTCTC	8 cut(s)	31, 266, 685, 755, 1043, 1378, 1984, 2363
BsmBI	CGTCTC	3 cut(s)	31, 266, 2363
BsmFI	GGGAC	3 cut(s)	130, 137, 1187
BsmI	GAATGC	1 cut(s)	653
BsnI	GGCC	6 cut(s)	204, 257, 1439, 1887, 2345, 2381
BsoBI	CYCGRG	6 cut(s)	516, 770, 2093, 2330, 2339, 2366
Bsp119I	TTCGAA	1 cut(s)	1734
Bsp1286I	GDGCHC	2 cut(s)	695, 2100
Bsp1407I	TGTACA	1 cut(s)	330
Bsp19I	CCATGG	1 cut(s)	1218
BspACI	CCGC	7 cut(s)	30, 48, 71, 258, 267, 796, 2202
BspANI	GGCC	6 cut(s)	204, 257, 1439, 1887, 2345, 2381
BspCNI	CTCAG	7 cut(s)	80, 155, 262, 283, 417, 1159, 1994
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	6 cut(s)	11, 59, 75, 153, 793, 1140
BspMAI	CTGCAG	2 cut(s)	104, 241
BspMI	ACCTGC	1 cut(s)	2296
BspOI	GCTAGC	1 cut(s)	741
BspPI	GGATC	9 cut(s)	488, 761, 941, 1044, 1133, 1146, 1444, 1748, 1842
BspQI	GCTCTTC	1 cut(s)	516
BspT104I	TTCGAA	1 cut(s)	1734
BspT107I	GGYRCC	1 cut(s)	57
BsrDI	GCAATG	2 cut(s)	376, 1665
BsrFI	RCCGGY	1 cut(s)	2405
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	3 cut(s)	1530, 1836, 1932
BssAI	RCCGGY	1 cut(s)	2405
BssECI	CCNNGG	7 cut(s)	43, 154, 155, 1218, 1453, 2346, 2382
BssT1I	CCWWGG	2 cut(s)	1218, 1453
Bst2UI	CCWGG	4 cut(s)	156, 1693, 1709, 2054
Bst4CI	ACNGT	8 cut(s)	57, 335, 536, 1012, 1311, 1679, 1952, 2035
Bst6I	CTCTTC	2 cut(s)	516, 1591
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstAUI	TGTACA	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	1379
BstBI	TTCGAA	1 cut(s)	1734
BstC8I	GCNNGC	4 cut(s)	604, 739, 2128, 2407
BstDSI	CCRYGG	2 cut(s)	43, 1218
BstF5I	GGATG	9 cut(s)	33, 838, 973, 1234, 1606, 1624, 1773, 2149, 2158
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	2 cut(s)	1426, 2267
BstHHI	GCGC	6 cut(s)	42, 53, 89, 251, 1425, 2266
BstMAI	GTCTC	8 cut(s)	31, 266, 685, 755, 1043, 1378, 1984, 2363
BstMCI	CGRYCG	1 cut(s)	258
BstMWI	GCNNNNNNNGC	6 cut(s)	48, 248, 257, 266, 380, 2162
BstNI	CCWGG	4 cut(s)	156, 1693, 1709, 2054
BstNSI	RCATGY	1 cut(s)	1896
BstSCI	CCNGG	5 cut(s)	154, 1691, 1707, 2052, 2139
BstSFI	CTRYAG	2 cut(s)	100, 237
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	5 cut(s)	223, 251, 2110, 2278, 2317
BstV2I	GAAGAC	1 cut(s)	1013
BstX2I	RGATCY	4 cut(s)	946, 1036, 1138, 1834
BstYI	RGATCY	4 cut(s)	946, 1036, 1138, 1834
BstZI	CGGCCG	1 cut(s)	255
Bsu36I	CCTNAGG	1 cut(s)	1077
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	6 cut(s)	204, 257, 1439, 1887, 2345, 2381
BtgI	CCRYGG	2 cut(s)	43, 1218
BtgZI	GCGATG	1 cut(s)	834
BtsCI	GGATG	9 cut(s)	33, 838, 973, 1234, 1606, 1624, 1773, 2149, 2158
BtsI	GCAGTG	3 cut(s)	97, 231, 613
BtsIMutI	CAGTG	7 cut(s)	97, 150, 231, 412, 613, 1684, 1939
BveI	ACCTGC	1 cut(s)	2296
Cac8I	GCNNGC	4 cut(s)	604, 739, 2128, 2407
CfoI	GCGC	6 cut(s)	42, 53, 89, 251, 1425, 2266
Cfr10I	RCCGGY	1 cut(s)	2405
Cfr13I	GGNCC	3 cut(s)	151, 310, 2280
CseI	GACGC	3 cut(s)	27, 240, 2380
Csp6I	GTAC	7 cut(s)	58, 277, 331, 1406, 1744, 2179, 2356
CviAII	CATG	7 cut(s)	307, 1219, 1447, 1465, 1636, 1893, 2008
CviQI	GTAC	7 cut(s)	58, 277, 331, 1406, 1744, 2179, 2356
DraIII	CACNNNGTG	3 cut(s)	145, 557, 1970
DriI	GACNNNNNGTC	1 cut(s)	23
EaeI	YGGCCR	2 cut(s)	255, 1885
EagI	CGGCCG	1 cut(s)	255
Eam1104I	CTCTTC	2 cut(s)	516, 1591
Eam1105I	GACNNNNNGTC	1 cut(s)	23
EarI	CTCTTC	2 cut(s)	516, 1591
EciI	GGCGGA	1 cut(s)	19
EclXI	CGGCCG	1 cut(s)	255
Eco130I	CCWWGG	2 cut(s)	1218, 1453
Eco147I	AGGCCT	1 cut(s)	1439
Eco24I	GRGCYC	1 cut(s)	695
Eco32I	GATATC	2 cut(s)	451, 1657
Eco47I	GGWCC	3 cut(s)	151, 310, 2280
Eco47III	AGCGCT	1 cut(s)	1424
Eco52I	CGGCCG	1 cut(s)	255
Eco57I	CTGAAG	2 cut(s)	1373, 1656
Eco72I	CACGTG	1 cut(s)	1379
Eco81I	CCTNAGG	1 cut(s)	1077
Eco88I	CYCGRG	6 cut(s)	516, 770, 2093, 2330, 2339, 2366
EcoRII	CCWGG	4 cut(s)	154, 1691, 1707, 2052
EcoRV	GATATC	2 cut(s)	451, 1657
EcoT14I	CCWWGG	2 cut(s)	1218, 1453
EcoT22I	ATGCAT	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	695
ErhI	CCWWGG	2 cut(s)	1218, 1453
Esp3I	CGTCTC	3 cut(s)	31, 266, 2363
FaeI	CATG	7 cut(s)	310, 1222, 1450, 1468, 1639, 1896, 2011
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	3 cut(s)	130, 137, 1187
FatI	CATG	7 cut(s)	306, 1218, 1446, 1464, 1635, 1892, 2007
FauI	CCCGC	2 cut(s)	274, 803
FbaI	TGATCA	1 cut(s)	1608
Fnu4HI	GCNGC	8 cut(s)	49, 72, 237, 240, 258, 2124, 2292, 2306
FokI	GGATG	9 cut(s)	20, 825, 980, 1241, 1613, 1631, 1760, 2156, 2165
FriOI	GRGCYC	1 cut(s)	695
Fsp4HI	GCNGC	8 cut(s)	49, 72, 237, 240, 258, 2124, 2292, 2306
FspBI	CTAG	6 cut(s)	446, 738, 1145, 1838, 2049, 2375
GlaI	GCGC	6 cut(s)	41, 52, 88, 250, 1424, 2265
GluI	GCNGC	8 cut(s)	49, 72, 237, 240, 258, 2124, 2292, 2306
GsaI	CCCAGC	2 cut(s)	1208, 2234
GsuI	CTGGAG	2 cut(s)	1730, 2075
HaeII	RGCGCY	2 cut(s)	1426, 2267
HaeIII	GGCC	6 cut(s)	204, 257, 1439, 1887, 2345, 2381
HapII	CCGG	3 cut(s)	61, 2141, 2406
HgaI	GACGC	3 cut(s)	27, 240, 2380
HhaI	GCGC	6 cut(s)	42, 53, 89, 251, 1425, 2266
Hin1II	CATG	7 cut(s)	310, 1222, 1450, 1468, 1639, 1896, 2011
Hin6I	GCGC	6 cut(s)	40, 51, 87, 249, 1423, 2264
HinP1I	GCGC	6 cut(s)	40, 51, 87, 249, 1423, 2264
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	3 cut(s)	776, 857, 1327
HinfI	GANTC	8 cut(s)	227, 497, 514, 918, 956, 1349, 1396, 2257
HpaI	GTTAAC	1 cut(s)	322
HpaII	CCGG	3 cut(s)	61, 2141, 2406
HphI	GGTGA	5 cut(s)	452, 793, 1184, 1956, 2051
Hpy166II	GTNNAC	4 cut(s)	231, 322, 1348, 2283
Hpy188I	TCNGA	7 cut(s)	134, 621, 672, 703, 1291, 1675, 2415
Hpy8I	GTNNAC	4 cut(s)	231, 322, 1348, 2283
Hpy99I	CGWCG	2 cut(s)	21, 256
HpyAV	CCTTC	6 cut(s)	424, 580, 901, 1645, 1720, 2017
HpyCH4III	ACNGT	8 cut(s)	57, 335, 536, 1012, 1311, 1679, 1952, 2035
HpyCH4IV	ACGT	2 cut(s)	275, 1378
HpyCH4V	TGCA	9 cut(s)	4, 102, 239, 374, 383, 551, 665, 1533, 2126
HpyF10VI	GCNNNNNNNGC	6 cut(s)	48, 248, 257, 266, 380, 2162
HpySE526I	ACGT	2 cut(s)	275, 1378
Hsp92II	CATG	7 cut(s)	310, 1222, 1450, 1468, 1639, 1896, 2011
HspAI	GCGC	6 cut(s)	40, 51, 87, 249, 1423, 2264
KpnI	GGTACC	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	2405
KroNI	GCCGGC	1 cut(s)	2407
Ksp22I	TGATCA	1 cut(s)	1608
KspAI	GTTAAC	1 cut(s)	322
LguI	GCTCTTC	1 cut(s)	516
LmnI	GCTCC	4 cut(s)	15, 26, 79, 1570
Lsp1109I	GCAGC	5 cut(s)	223, 251, 2110, 2278, 2317
LweI	GCATC	5 cut(s)	370, 589, 807, 1157, 2143
MaeI	CTAG	6 cut(s)	446, 738, 1145, 1838, 2049, 2375
MaeII	ACGT	2 cut(s)	275, 1378
MaeIII	GTNAC	5 cut(s)	164, 335, 409, 1681, 1962
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	4 cut(s)	946, 1036, 1138, 1834
MhlI	GDGCHC	2 cut(s)	695, 2100
MlsI	TGGCCA	1 cut(s)	1887
MluNI	TGGCCA	1 cut(s)	1887
MlyI	GAGTC	5 cut(s)	236, 508, 1343, 1405, 2266
MmeI	TCCRAC	1 cut(s)	726
Mox20I	TGGCCA	1 cut(s)	1887
Mph1103I	ATGCAT	1 cut(s)	385
MroNI	GCCGGC	1 cut(s)	2405
MroXI	GAANNNNTTC	5 cut(s)	348, 1121, 1386, 1730, 1805
MscI	TGGCCA	1 cut(s)	1887
MseI	TTAA	9 cut(s)	189, 321, 1325, 1785, 1872, 1905, 2088, 2109, 2117
Msp20I	TGGCCA	1 cut(s)	1887
MspA1I	CMGCKG	4 cut(s)	71, 269, 953, 1208
MspI	CCGG	3 cut(s)	61, 2141, 2406
MspR9I	CCNGG	5 cut(s)	156, 1693, 1709, 2054, 2141
MunI	CAATTG	1 cut(s)	546
Mva1269I	GAATGC	1 cut(s)	653
MvaI	CCWGG	4 cut(s)	156, 1693, 1709, 2054
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	6 cut(s)	48, 248, 257, 266, 380, 2162
NaeI	GCCGGC	1 cut(s)	2407
NciI	CCSGG	1 cut(s)	2141
NcoI	CCATGG	1 cut(s)	1218
NgoMIV	GCCGGC	1 cut(s)	2405
NheI	GCTAGC	1 cut(s)	737
NlaIII	CATG	7 cut(s)	310, 1222, 1450, 1468, 1639, 1896, 2011
NlaIV	GGNNCC	6 cut(s)	11, 59, 75, 153, 793, 1140
NmeAIII	GCCGAG	2 cut(s)	2371, 2407
NmuCI	GTSAC	3 cut(s)	409, 1681, 1962
NsiI	ATGCAT	1 cut(s)	385
NspI	RCATGY	1 cut(s)	1896
NspV	TTCGAA	1 cut(s)	1734
PaeR7I	CTCGAG	1 cut(s)	2339
PaqCI	CACCTGC	1 cut(s)	2296
PasI	CCCWGGG	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	1439
PciI	ACATGT	1 cut(s)	1892
PciSI	GCTCTTC	1 cut(s)	516
PctI	GAATGC	1 cut(s)	653
PdiI	GCCGGC	1 cut(s)	2407
PdmI	GAANNNNTTC	5 cut(s)	348, 1121, 1386, 1730, 1805
PfeI	GAWTC	3 cut(s)	497, 918, 956
Pfl23II	CGTACG	1 cut(s)	276
PflFI	GACNNNGTC	1 cut(s)	1235
PfoI	TCCNGGA	1 cut(s)	1707
PkrI	GCNGC	8 cut(s)	50, 73, 238, 241, 259, 2125, 2293, 2307
PleI	GAGTC	5 cut(s)	235, 508, 1343, 1404, 2265
PmaCI	CACGTG	1 cut(s)	1379
PmlI	CACGTG	1 cut(s)	1379
PpsI	GAGTC	5 cut(s)	235, 508, 1343, 1404, 2265
Ppu21I	YACGTR	1 cut(s)	1379
PscI	ACATGT	1 cut(s)	1892
PshBI	ATTAAT	1 cut(s)	2088
Psp6I	CCWGG	4 cut(s)	154, 1691, 1707, 2052
PspCI	CACGTG	1 cut(s)	1379
PspFI	CCCAGC	2 cut(s)	1204, 2230
PspGI	CCWGG	4 cut(s)	154, 1691, 1707, 2052
PspLI	CGTACG	1 cut(s)	276
PspN4I	GGNNCC	6 cut(s)	11, 59, 75, 153, 793, 1140
PspPI	GGNCC	3 cut(s)	151, 310, 2280
PspXI	VCTCGAGB	1 cut(s)	2339
PstI	CTGCAG	2 cut(s)	104, 241
PsuI	RGATCY	4 cut(s)	946, 1036, 1138, 1834
PsyI	GACNNNGTC	1 cut(s)	1235
PvuII	CAGCTG	2 cut(s)	953, 1208
RsaI	GTAC	7 cut(s)	59, 278, 332, 1407, 1745, 2180, 2357
RsaNI	GTAC	7 cut(s)	58, 277, 331, 1406, 1744, 2179, 2356
SapI	GCTCTTC	1 cut(s)	516
SaqAI	TTAA	9 cut(s)	189, 321, 1325, 1785, 1872, 1905, 2088, 2109, 2117
SatI	GCNGC	8 cut(s)	49, 72, 237, 240, 258, 2124, 2292, 2306
Sau96I	GGNCC	3 cut(s)	151, 310, 2280
SchI	GAGTC	5 cut(s)	236, 508, 1343, 1405, 2266
ScrFI	CCNGG	5 cut(s)	156, 1693, 1709, 2054, 2141
SduI	GDGCHC	2 cut(s)	695, 2100
SfaNI	GCATC	5 cut(s)	370, 589, 807, 1157, 2143
SfcI	CTRYAG	2 cut(s)	100, 237
Sfr274I	CTCGAG	1 cut(s)	2339
SfuI	TTCGAA	1 cut(s)	1734
SinI	GGWCC	3 cut(s)	151, 310, 2280
SlaI	CTCGAG	1 cut(s)	2339
SmlI	CTYRAG	4 cut(s)	812, 1643, 1721, 2339
SmoI	CTYRAG	4 cut(s)	812, 1643, 1721, 2339
SseBI	AGGCCT	1 cut(s)	1439
SsiI	CCGC	7 cut(s)	30, 48, 71, 258, 267, 796, 2202
SspI	AATATT	1 cut(s)	1025
SspMI	CTAG	6 cut(s)	446, 738, 1145, 1838, 2049, 2375
StuI	AGGCCT	1 cut(s)	1439
StyD4I	CCNGG	5 cut(s)	154, 1691, 1707, 2052, 2139
StyI	CCWWGG	2 cut(s)	1218, 1453
TaaI	ACNGT	8 cut(s)	57, 335, 536, 1012, 1311, 1679, 1952, 2035
TaiI	ACGT	2 cut(s)	278, 1381
TaqI	TCGA	4 cut(s)	355, 1352, 1734, 2340
TatI	WGTACW	2 cut(s)	330, 1743
TauI	GCSGC	3 cut(s)	51, 74, 260
TfiI	GAWTC	3 cut(s)	497, 918, 956
Tru1I	TTAA	9 cut(s)	189, 321, 1325, 1785, 1872, 1905, 2088, 2109, 2117
Tru9I	TTAA	9 cut(s)	189, 321, 1325, 1785, 1872, 1905, 2088, 2109, 2117
TscAI	CASTG	7 cut(s)	104, 150, 238, 412, 613, 1684, 1939
TseFI	GTSAC	3 cut(s)	409, 1681, 1962
TseI	GCWGC	5 cut(s)	236, 239, 2123, 2291, 2305
Tsp45I	GTSAC	3 cut(s)	409, 1681, 1962
TspGWI	ACGGA	5 cut(s)	13, 443, 980, 1423, 1557
TspRI	CASTG	7 cut(s)	104, 150, 238, 412, 613, 1684, 1939
Tth111I	GACNNNGTC	1 cut(s)	1235
VpaK11BI	GGWCC	3 cut(s)	151, 310, 2280
VspI	ATTAAT	1 cut(s)	2088
XapI	RAATTY	5 cut(s)	569, 1504, 1804, 1941, 2298
XbaI	TCTAGA	1 cut(s)	445
XceI	RCATGY	1 cut(s)	1896
XhoI	CTCGAG	1 cut(s)	2339
XmnI	GAANNNNTTC	5 cut(s)	348, 1121, 1386, 1730, 1805
XspI	CTAG	6 cut(s)	446, 738, 1145, 1838, 2049, 2375
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.