Rorug02G0455200

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009264
Physical Location & Seq
Forward (+)
58453028 .. 58481371
28344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0455200.1

Sequence Viewer

Length: 10332 bp
ATGATCAGAAACGGAACAATGTTCGAACGACTCGTCAGTCAGGTTCTTGACGGCTATCTCGGTCGCTACGTCAAGGATTTTCACAAGCACCAGCTCAACATCACCATTTGGAATGAGGAAGTGTTCTTGGAAAACGTCGAGCTTAGTCTCGAAGCCTTTGATTATCTCCAGTTGCCTTTCGCTCTCAAACAAGGTCGGATTGGAAAGATAAGCATCAAAATTCCATGGAAAACGCTTGGTAGGGACCCCTTTGTAATTAGTTTGGAAAATGTCTTCCTATGTGCATCCCAACGAGATGATGAAGAGTGGAGTTTGGATGAAGTTGAAAAACGAGAGTTTGCTGGAAAAAAGGCCAAACTTGCTGCAGCAGAACTGGCCAAATTATCAAAACGTGTATGCGAAAACCAGGCTGGGCTTAGATCAATAATTACTGCTAAGGTTCTTGACAGCATCCAAGTGTCAATCAGAGATTTTCACATCTTGTACCATGACAAGCTCAGTGGTTCGGCATGTAATATTTTTGGTTTGAAGTTTTCCAGCTTGAGGACTATGAAGCAAAATCCTTCCGGGTCGCTTGCAAAGGGAAGAGGGGCCCAAGTTAACAAAACTGTGGAGATTATGGGTTTGGAGTTTTACTGTGGCACACTTGATGGGGCCGCGGAGTTGATGGCTATGAAAAATGATGGGGACTCCGTAGTATGGCAAGATATAAGATATGACGGGAAAAGATATAACAACTCCATACTGTCACCATGTGATGTTTCCATGTCACTCTCGGTCAACAGATCAGGAGAGCTTGATAGCAAAATCCCGCAGTACTCCATCACCGCTGAGATAACTGACTTGGTGATGTCCTTAGATGAGGTTCAGTTGCAACAGATTTTGTTTCTGTGGGATTATTTTTGTACATGTGAATTGAGAAATAAGTATGGGCGTTATCGTCCCTGGAGTAGTCCGTTATCAAAAAAGGTGAAGGGTTGGCAAATGTTGTGGTGGCATTATGCGCAAGAATCTATCTTATCAGATGTACGGAAGAGATTAAAGAAAACATCGTGGAGACACTTTGGACAGAGACTAAGCTCTTGTCGGAAGTATGTTAACCTATATAAGACTAAGTTGGATTTTCTTCGCCATGATCAGCCAATTGATGAAAGTACTCGATGGGAATTGGAGCAGATGGAGAAAGAATTAGACATAGATGATATTTTAAGTTACAGGTCAGCTGCAGAATGTGAGTTGCAGGAGTTTTTGGTGAACTCTTCAACTGGAAAATCCCGTGGATGGCTGAACTGGCTATCTCTTGGTATGCTTGGTGCTGGAGGAACAGATGACTTGGGTCAATTTTCTGGGGCCGTTTCTGTTTCTGATGCAGTTATTAAGGATATATATAAGGTGACAAAGTTCAATCCTCCTATTTTATCCAATGGGGATGCTCGAACAACTGATAAGATTGATATATGCGCACTCCATTTCAGCATCAATCGGATTTCTGCAACACTGCGTAACATGAAGTATGGCCAAGAAATTGCAGAGTTGATGTTGAACGGGGTGACTACGGAGTGCAAATTTAGGGAAGAATCTGCAGCCATTGTCGCCATTGTGAACTCAGGGCAGATGGTTTATCCTTGTAACAAGAAAGTCATTCTGCATTTGCGGAGGCCTAATAATGAGAAGAACGAACTGGAAAACGAGAATCCTTCCTGTAAATTGCAAGTGGATGTATCATCAGACCTCGAGGCTGAATTGTCCATTAAGGGGGTGCTTCAACCATTAGAAGTCACCGTTGATGCAGAATTTTTCTTAAAGTTGATGGATTTTCTTGGAGCTTTAAAATCCTTTGAAAGTCAGCATGGAAGGGTCCTTCTGTCGCTAAATGGGATAGAAAATGTCAATGGTCGACTGTTGTCGAAAGCTGAATACCTTTTATCACGTCATAGGAAAGTGGTGTGGGATGTTACTATTTTCAATATCATCATAAATGTTCCTTGGAGAGATCCAATATCCGATCCACATAACTTGGTTTTTGAAGCAGGCTCTCTTCTTTTTAGGACTAAATGTGATATGGGATCTCAGCCATCAGATGAGGAACAATTTTATACTCTGAAAAAGTTCTTAACTTCAGTTTCCAGCTGTAATATTTCTCCGTGCGTCCAAATTCAAGATCTGTACGATCACTATGAGGTCAAGTTAAATGATTTTGAGTTGAAGGTAACGATGCCTTCTCATTCTTCTCCAATTTCTATCTTGGAGAAACTTAGTCCTTCTGTCTCCTTTGCATTTTGCTTGATCCAAGATAAGTCAATATTGAAACAGTTGGAGGTTTGTGTCATTGTATCATCACTTCATGCACATTTTTCTCCATCGATATATGCTGCAATGCTGGGATTGATAGAATATCTAGGTGCTCTGCAATTGAAGTTTGATTCTCTACCCTTGGAAAGTATTGATTCACTTGATGCCACATCAAATGGATTAGGGAATCCTGTTTTCGGTTTCTCTACCAATATCAAACTGGAGACAGTGAAGATTGAAGTCGAACTGGAAAATGAGAAAGAAAATAGCTCGTCATTCATGCTTAAATTCCAACAATTGGACATGGGTTATTCGCTTTCAAAAATTGAGGAATGCTGGATCGTAATGAACGCATTGAGTATCACCACTTCTAAATTGGCTGATAAAAGTGATAGTCGGATTTTGTATTCATCTGGAAATCAATCATCTATGAATGCTTTACACCCACATGAGATTGGGATTGACAATAGAAATGATCATTTTGCCAACAACGTTGGAAATAATGAAGCATGCTTTACTTTACAATATGAATCTCATCCGAAGGAGACAGTTCCTCAAAAATGTAGAATATGCTTGAATAACGGTGATCTCCACTGCTACCCATATGTTATCCGGCTTCTGGTTGCATTTTTTGATAAACTTTCTACATATGGTGCATCTAATCCTGGTAAGAACACCTTGAGCTCATCTGTGGATGCTAGGTATCCAAAAAGTGTTCCTGGTTTTGGGGTTCAAAGGTTTGGTTTCTCCAACTTTGTAGAAACTGGGTCCTCTGAGTATGCAAGCATACCTTTAGATCATTTTCCTTTTGTTATGCTATCAAATGCTGGTTCCCTTGGTAATCTTGAAAGTTCTTTGCTTTATGCCAGTCCCGAGTGGAGAAAGTATTTCAGTTTAAGGGACAGCAGAATCAGCAGCCCACAATCCAGCATAAAGGAGGTATCTAAAAAGTTTCATGCCCCAGCATTGAAGTACTCATCTGTGGTTGAAGCTTCTGCTGCGTGTGGGAGTTCTGCTACTACAAGTAGTCCGCTTGTAATTGATGTCGATCTCTGTGGAATCAGAGTGCATTTTCATGATTCAAAATGCATTGTTGGAACAATTACCCTGCCTAGGTCCAACTCTTCAGTATTAATTTCTCAAAACAGCTTTGATATATTGTGTTCTACTGAAGGGTTAGTTCTCAGTTCATCTTGGTCGTCACAGAATTTACGCGAGTTTCTGTGGGGCCCCTCGGTCTCGAATTTATCTCCTATTTTAAATGTACGTGTGAGGAAAGAATGTGGGCCATTGAGTTCACATGTTGAACTATGCTTCAGCATACAGCATGTATATTGCATCTTACCTCCTGAATATCTGGCCATAATAATTGGTTACTTTTCATTGTCTGATTGGAGTTCAGATTCTAATGACCAGCTTGTCACCATAGGGCATGAAGATACTGAAAGTGAAAGTGAATGTTCCTTTATCTACAAGATTGAGATACTGGACTCTGTTTTAGTTGTGCCCGTGGAAAGCAACGAGGGTCAGTTTCTAAAGAGTGAACTTCAGCAGTTCTACTGTACATTTATTCAAAGCAGTTCGAATAATGTATTGAAGGACATTCCACATGAATGTTGGGTCCCGACTGATAAACTTGCTAAAAGAAATCATTGTTTAAATTTATTTGGACGAGACTTGTTTCTATCATTCCTGTCTTTCAAGGACAATCAATACAGTTCCTCTGTAGATGTTCCGTTAATTGCTTCCCTATGTGCTGACGTTTGGGTGAAAATACCTTGTGAAAGTGAATCGTCATGTGAAAGTTCTCCCTCAAACATTTGTGTCATGATCAGAGTTGGAAACTGTCAGCTTAAGCCTGAGGATTATCACTTTTTTTATGGATTTGAGGGGCTAAATGATATCATAAATCAATTTTCTGTAGTTTCTGATGTATCTGAATGTTTCAAGTCTGATGTTCTACAATTTCTTCAGTCAAAAAGGTGCTTAGCACAGAAAAATGCAGTTCCACCTGTAGTTTCAAGCATTAATTACACCGAAGTTAGATGCTATATCAATTCATTGTTGATACAGTTGAATCCCTGCCAAAGAGTCTCGGAAGACCCTATTACTACTGCTGAAATGAAATTCATCTGCTCTGCATCATTGAGAAATGACACTCTCTTAAGTGTAGCTCTAAGTTTTTCTTCCCTAGAAATATGTTCATTACCTAATTCTTTTGTATTAGCAAGATGCAAGTCCACAAGCTCAACTTCGTCAGTTCTTGAATTTTCTCTTACCAAAGAAAAAGATGGTGTAAATGAACTTCATGTTTCCTTGCCTTGTGTTGAAGTGTGGTTACATTTGTCTTACTGGAATGAGGTTGTTGACTTTTTCAAATCTTGTGCTGGACAATCATCTGCAAGTCTGCCAGACAACTTGGAGCAGGACACTGATGTCCTCATTGTGAGCTCAGAGAATATTTTCATTACATTTTACGTACCTGTTTGGATCGGTGACCGAGCTTTTGGGGAATATCAGGGAGAGGAATGTCATGGAGATGGCTCTACAAATGGTTTATCTGACATAGTTGAAGCAAAAGCCTTTAGTTCCATTGCAGTTACTTTGTGCAGTAGAAGTAGTGAACTTTTTGTTGATGGAACAAATGTGAAAGTAAAATCCAACATAGAAAAACTGGAGGGCATGGTATTGGTAAGCCAGGATGGAAGTGTTCAATCTTCACCCTTTTTCCAAATATCTCAGGTGCTTTTGGTAGCTGACATAAATAACCGTATGGAGCTTATGCATGTTGAAGTAGATGTTCAATGTGATCATTTAGATGTATGGATTTCACACAGCATTCTCTACTTCTGGCATGGTGTACAATTCAGTGTTGCTGAAGGAGGGCCTTCTCAATTTTCTTTTGGTAGAATTGATGTTAAAGTCCAGCTTAGGAAGGTTTCTTTTCTGCTAAGCGATGGAAGGTGGAGTTGTAGTGGACCCCTGTTTCAGCTTCTTTTGGGGAACGTCCTCTTGCATATCATTGTGACTGAAAATAACCTCGAAGGTTTAGTTTCGGGTGACCTTCAAGTGAACTACAATAACATTCACAAGGTGTTCTGGGAGCCTTTTATTGAACCTTGGCAGTTTGAGGTCAATGTGATTAGAAAACAAGAGATGAGTCTCAGCAGCTCCAATTTGACAGATGTCCATCTGAAATCAGCTGCACACCTTAATGTGAACTTCACTGAATCCCTTATAGAGTGTGTTTTCAGGACAGTTGAGATGATCAAGGATGCTTGGGTTATAGTGAGTCCAAATGATCTTCCTGAAAGCCAGAAGTTATTAAATTCTCCGTTTGCTAAGCACACATATGCAGGAAAATATGCTCCTTATGTACTTCAAAACTTGACATCGCTACCTCTAGCATATCACGTTTATCAAGGCGCAATTAATTCTGATGAGTTGGATGTCTCAGAAACGAATAGAAAATATGTGCAACCAGGTTCTTCTATTCCAATATATATCGATAATACTCCTGAGAAACAACTTATTCATGTTAAGCCAGCACACTTCTCTGAGAGACTTTTTGACCAGAAGGCAAATGGGGTTCGCCATCAGTATATTACCATTCAACTTGATGGAACATCAGTGCCTTCTGAACCGATTTCAATGGATCTTGTAGGACTTACCTACTTTGAGGTTGATTTTTCTATGTCATACAGTGACAATATGGAAAACCATAGAACAAATGCCAATGCTGGTTTTGTTGTTCCTGTTGTCTTTGATGTTTCAGTGCAGCGGTACAGCAAATTAATCCGATTATACTCAACGGTTATACTTTCGAATTCAACTTCCATGCCATTGGAGCTGCGATTTGATATTCCATTTGGTGTGTCCCCAAAGATCTTAGATCCAATATATCCTGGTCAAGAGTTACCGCTGCCTCTACACTTGGCCGAAGCTGGTAGGATTAGATGGCGTCCAATTGGAGATTCTCATCTCTGGAGTGAAGTTTATAACCTCTCAAACCTGCTTTCTCAGGAGGGCAAAATTGGATTTCTCAAGTCTTTTGCTTGCTATCCAGCCCATCCCAATAGTGATCCATTTCGCTGTTGTATCTCAGTTAGAAACGTCAGTTTACCTTCACCTGTTAGGTCAAGAAAGAGTTCTTTAAAGCAAACAGTTGCAAGTGGTGGTCAAATATTGCACAAGGACGAGGCAAAAAAGCAGTTTATTCACCAAGTAGTCCTCAGTATCCCTTTAGTAGTGAATAACTATCTTCCCGATGCAGTGACACTGACGATAGAAAGCGGTGGGATTACCCGGACTGCATTTCTTTCAGAGGTGGAAACTTCTTTTCATAATGTTGATCCTTCTCATCAGCTGAGATTGGAGATCCATATGCATGGATTTAAAACAGCTATTTTGGATTTTCCACGTACTGAAATATTCTGTAAAAAGGCCAAGTTTGTTGGAACGAAGTTCTCACTTTCTGAAATTGTGACCTTCGACAGAGACTCAACAAATGGTCCAATGTATGTCACAGTGGAAAAGGTGATGGATGCATTTTCTGGAGCCAGGGAACTCTTTATCTCTGTTCCATTTCTGTTATATAATTGCACTGGCTTTCCGCTCTTCATTTCTGAATCTGCCAGTGAAATGAAAGGAGTAAGCTGCATTGTGCCTTCTTGTTATGATATGGTTGATCAAGAAGTACTTCAGGGAAAAAAGGATGGTCTTGGTCTGGTATCTTCTAACCATAATCCAAATGCTAGAGATTCATATCCAATGGGAAGTTCTTCCTCAAGAGTTCACATTGTCTCAATTAGAGATAATGCTACAACTCACAAAGAAATAAGTTTTAGCAAGCCTCTTTACTCTGAAGACAACTATCATGAGCTTTTAAGCAAACATAATTTAGACAGGGAAAACTCACTTTCCCACAGTTCACAGAATAGATCGAGTTCAAGCAGTCAGTTGACCTCAAAAGATTTAAACTCTAGTGGTTATGAGCGTGGAAGAGTAAGGGCATGCATGTTCTCCCCTAATCTGATTTCCTCTGCTGGTGAAGTAATGGTTAGAGTGAGTAGGTGTATGCCTGAATATGTAACAGAAAAGATGCCAAATTCTCTATGGTCAAGTTCATTTCCCCTTATTCCACCTAGTGGTTCAACTACTGTCCTTGTTCCTAAACCATCGTCAAATGCGGCTTTTGTGATGTCCATTACGTCCAGTGCAGTTGCCGCACCATTTGCTGGGAGGACAAGTGCAATTACCTTCCAACCTAGGTACATCATCAGCAATGCATGCAGTAAGAACTTATGTTATAAGCAGAAAGGAACCGAATTTTCTTTTCAATTGGGTACAGGTGAACATTCTCATCTTCACTGGATGGATACAACCAGGGAGTTACTCGTTTCAATTCGTTATAATGAGCCAGGATGGCAATGGTCAGGTGGCTTCTTGCCAGACCATCTCGGTGACACTCAAGTGAAAATGCGGAATTATCTCTCTGGTTCCTTAAATATGATACGGGTTGAAGTGCAAAATGCCGACGTCTCTGTGGGAGATGAAAAGATTGTTGGAAACTTCTATGGAAATTCTGGGACAAACTTGATTCTTGTATCAGATGATGAGACTGGGTATATGCCCTACAGGGTTGATAATTTTACTAACGAGAGGCTAAGGATCTACCAACAAAGGTGTGAAACCTTTGAGACTATTGTTCAGTCTTACACTTCTTGCCCTTATGCCTGGGACGAACCATGCTATCCACATCGTCTCACTGTGGAGGTACCTGGTAAGCGTGTTTTAGGGTCATATGCTCTTGATGATGTAAAAGAATACAGTCCGGTGCAATTACCATCATCTCCTGAGAAACCTGAGAGAACATTGCATATATCCATCCATGTTGAGGGAGCAACAAAGGTCCTCCATGTTATTGATTCAAGTTACCATGTCTTGAATGACAACAGAAGTATTAGTCTACCTCACTTAAAAGAGAAGGGGAAGCATGAACAGAAACAGGACAAGTTTATTGGTTTCATGGAAAGAATTTCAGTTTTTATTCAACAGATTGGCATCTCTTTGATCAATATTCACCCTCAGGAGTTGCTTTTTATATGTGCAAAGAGCATTACAGTTGATCTGGTACAGAGTTTGGATCAACAAAAACTTTCCTTCCAAATCGCATCATTGCAAATCGATAATCAGCTTCGATCTTCCCCATATCCTGTTATGTTGTCTTTTGATCGTGAGTACAAAAACAATCCAGCTGGCCATGTAATTAGGGAGGATGACATTAAACCAAGTGAAAGGATTTTGCAAAGGACTTCTCGCAATTTTGAACCTGTATTCTGCCTAGCTGTATCTAAGTGGAGGAAGAAAGATGTCTCACTGGTTTCGTTTGAATACATAAGCTTAAGAGTTGCAGATGTTTGTCTTGAGCTTGAACAAGAATTGATATTAAGCCTATTTGGCTTCATAAGAAATGTATCTTCAAGGTTCCAGAGTAGAGTCTTGCCATTATCAGATCCGTTCCTGCACCATCCTTCTAATGATGCTGGCTCAATGGATGCGTATGCAACTGATAACCAACTTCACTTAATGAATGTTCCTCTGCTTAATGAAAACCACAAGCAGAGACTCTCACTACCTTCAATAGTTCCAATTGGAGCTCCTTGGCAGCAAATTTACCTTTTAGCTAGAAGACAGAAAAAGATATATGTAGAAGTGTTTGAATTTTCTCCCATCAAGTTGACCCTAAGCTTTTCCAGCACTCCATGGATGCTTAGAAATGGAATTCTTGCAGCAGGAGAATCTGTTATTCATAGAGGTCTGATGGCTCTTGCTGATGTGGAGGGTGCACGAATTCATCTGAAGCAGTTGACAATTGCACATCAAATTGCTAGCTTGGAGTCTCTACAAGAGATCCTTATGAGGCATTATACTCGGCAACTTCTTCATGAGATGTATAAGGTGTTTGGTTCAGCTGGTGTAATTGGCAATCCCATGGGATTTGCAAGGAGTTTGGGGCTTGGCATTAGAGACTTCTTGTCAGTGCCTGCTAGAAGCATTTTTCAGAGCCCTACTGGATTAATTACTGGCATGGCACAAGGCACGACTAGTCTCCTAAGTAATACTGTCTATGCTATAAGTGATGCTGCCACCCAATTCAGCAAAGCTGCACACAAGGGAATTGTGGCATTTACATTTGATGACCAGGCTGTTTCAGGGGTGCAACAGCAACAGACTGGTATAGCATCTCACTCTAAAGGTGTTATCAATGAAGTATTTGAGGGACTCACAGGTCTTCTTCAATCACCGATCAATGGAGCTGAGAAACATGGTCTTCCTGGTGTGCTCTCAGGCATAGCTTTAGGTATTACAGGACTTGTGGCCAAACCAGCTGCTAGTATTCTTGAAGTTACAGGAAAAACTGCACAGAGCATTAGAAACCGAAGTAGGATCTATCAAACAGGACAACAGCGCTTTAGAGTCCGTCTTCCAAGGCCTCTAAGCCGAGAATATCCCTTAAGACCTTACTGTTGGGAAGAAGCTGTTGGAGTATCAGTACTTGTTGAGGCAGATGATAGTTTGAGGCTCAAGGATGAAATTTTTGTTATGTGCAAGAAACTTAAAGAAGCTGGTAAATTTGTCATCATCACAGAGAGACTGGTTTTGATTGTAAGCTGCTCGAGTTTGGTGGACTTGGGTAAGCCTGAATTTCGTGGTGTTCCTTCTGATCTCAAATGGGTGATTGAATCAGAAATTCATTTGGAGAGTGCGATGCATGCTGACTGCGATCAAGGAGTAGTTCATATAGTCGGCAGCAGCTCAAATACGCCTTTGCGTCAAAACCAGCTAGCCAAAAGAAGCAGTGGAACAAGGGCGGTGCGTTGGAATAATCCTACTGTTCCCCTCATTCAGACTAACTTGGAACTGGAACACAAAGAAGATGCGGAGAACTTGTTACAGGTTTTATTGTCTACAATTGAACTGGGAAAAGACCAAGGTTGGGGTTGTAGGAATATTCTGCACCGAAGTAATATCAAATAG

Protein Analysis

3443

Amino Acids

385.71

Weight (kDa)

6.03

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS13_N PF12624 7 - 734 3.7e-76 VPS13-like family N-terminal region
VPS13_M PF25033 1776 - 1854 2e-07 VPS13-like family middle region
VPS13_VAB PF25036 2019 - 2310 5.7e-09 Vacuolar-sorting associated protein 13, adaptor binding domain
VPS13_VAB PF25036 2417 - 2681 2e-23 Vacuolar-sorting associated protein 13, adaptor binding domain
VPS13_C PF25037 3258 - 3327 1.9e-08 Intermembrane lipid transfer protein VPS13, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 6291, 7602, 7704
AasI GACNNNNNNGTC 4 cut(s) 36, 3710, 4727, 9582
AatII GACGTC 1 cut(s) 7833
AbsI CCTCGAGG 1 cut(s) 1733
Acc16I TGCGCA 2 cut(s) 1005, 1462
Acc36I ACCTGC 1 cut(s) 6312
Acc65I GGTACC 1 cut(s) 8068
AccB1I GGYRCC 1 cut(s) 8068
AccB7I CCANNNNNTGG 3 cut(s) 2590, 7439, 7529
AccBSI CCGCTC 1 cut(s) 6907
AccI GTMKAC 3 cut(s) 1897, 8260, 10262
AccII CGCG 2 cut(s) 659, 3507
AclI AACGTT 1 cut(s) 2784
AcoI YGGCCR 6 cut(s) 375, 1516, 3651, 6228, 8551, 9672
AcyI GRCGYC 2 cut(s) 6253, 7830
AdeI CACNNNGTG 3 cut(s) 755, 5386, 7439
AfeI AGCGCT 1 cut(s) 9764
AflII CTTAAG 4 cut(s) 4145, 4456, 8695, 9808
AflIII ACRYGT 4 cut(s) 391, 908, 3559, 3592
AhdI GACNNNNNGTC 1 cut(s) 9328
AhlI ACTAGT 1 cut(s) 9398
AjiI CACGTC 1 cut(s) 1931
AjuI GAANNNNNNNTTGG 8 cut(s) 6250, 6282, 7054, 7086, 7839, 7871, 9819, 9851
AleI CACNNNNGTG 1 cut(s) 7763
Alw21I GWGCWC 6 cut(s) 2407, 2978, 4745, 8953, 9142, 9639
Alw44I GTGCAC 1 cut(s) 9138
AlwNI CAGNNNCTG 1 cut(s) 9338
Ama87I CYCGRG 3 cut(s) 1733, 3164, 9970
Aor51HI AGCGCT 1 cut(s) 9764
ApaI GGGCCC 2 cut(s) 595, 3524
ApaLI GTGCAC 1 cut(s) 9138
ArsI GACNNNNNNTTYG 4 cut(s) 18, 50, 4781, 4813
AseI ATTAAT 5 cut(s) 3425, 4320, 5724, 6086, 9371
Asp700I GAANNNNTTC 5 cut(s) 2108, 4754, 6439, 6990, 7072
Asp718I GGTACC 1 cut(s) 8068
AspA2I CCTAGG 2 cut(s) 3404, 7559
AspLEI GCGC 4 cut(s) 1006, 1463, 5720, 9765
AsuC2I CCSGG 2 cut(s) 568, 6598
AsuII TTCGAA 3 cut(s) 24, 3875, 6116
AsuNHI GCTAGC 2 cut(s) 9182, 10138
AvaI CYCGRG 3 cut(s) 1733, 3164, 9970
AvaII GGWCC 8 cut(s) 244, 1858, 3060, 3408, 3913, 5270, 6803, 8203
AvrII CCTAGG 2 cut(s) 3404, 7559
AxyI CCTNAGG 2 cut(s) 4152, 8379
BaeGI GKGCMC 4 cut(s) 595, 3524, 3801, 9142
BalI TGGCCA 5 cut(s) 377, 1518, 3653, 8553, 9674
BanI GGYRCC 1 cut(s) 8068
BanII GRGCYC 6 cut(s) 595, 2978, 3524, 4745, 8953, 9362
BarI GAAGNNNNNNTAC 8 cut(s) 2325, 2357, 2644, 2676, 4581, 4613, 4614, 4646
BbsI GAAGAC 7 cut(s) 265, 4398, 7164, 8989, 9578, 9617, 9770
Bbv12I GWGCWC 6 cut(s) 2407, 2978, 4745, 8953, 9142, 9639
BceAI ACGGC 2 cut(s) 67, 1337
BcgI CGANNNNNNTGC 2 cut(s) 9206, 9240
BciVI GTATCC 3 cut(s) 3006, 6539, 7663
BclI TGATCA 8 cut(s) 3, 1135, 2767, 4122, 5101, 5559, 6979, 8364
BcnI CCSGG 2 cut(s) 568, 6598
BcuI ACTAGT 1 cut(s) 9398
BfmI CTRYAG 7 cut(s) 363, 1224, 1581, 4017, 4212, 4305, 7927
BfoI RGCGCY 1 cut(s) 9766
BfrI CTTAAG 4 cut(s) 4145, 4456, 8695, 9808
BfuAI ACCTGC 1 cut(s) 6312
BfuI GTATCC 3 cut(s) 3006, 6539, 7663
BglI GCCNNNNNGGC 2 cut(s) 7717, 8751
BglII AGATCT 2 cut(s) 2161, 6177
BlnI CCTAGG 2 cut(s) 3404, 7559
BlpI GCTNAGC 3 cut(s) 4279, 5243, 5634
BmcAI AGTACT 5 cut(s) 818, 1156, 3266, 6990, 9849
Bme18I GGWCC 8 cut(s) 244, 1858, 3060, 3408, 3913, 5270, 6803, 8203
BmeRI GACNNNNNGTC 1 cut(s) 9328
BmeT110I CYCGRG 3 cut(s) 1733, 3164, 9970
BmgBI CACGTC 1 cut(s) 1931
BmrI ACTGGG 3 cut(s) 3066, 7923, 10283
BmtI GCTAGC 2 cut(s) 9186, 10142
BmuI ACTGGG 3 cut(s) 3066, 7923, 10283
BoxI GACNNNNGTC 3 cut(s) 1335, 1903, 5477
BpiI GAAGAC 7 cut(s) 265, 4398, 7164, 8989, 9578, 9617, 9770
BpmI CTGGAG 7 cut(s) 152, 967, 1338, 2534, 4988, 6298, 6867
Bpu10I CCTNAGC 4 cut(s) 435, 5222, 7958, 9038
Bpu1102I GCTNAGC 3 cut(s) 4279, 5243, 5634
Bpu14I TTCGAA 3 cut(s) 24, 3875, 6116
BpuEI CTTGAG 7 cut(s) 562, 2992, 6320, 7063, 7746, 8738, 9863
BpuMI CCSGG 2 cut(s) 568, 6598
Bsa29I ATCGAT 3 cut(s) 2363, 5799, 8478
BsaAI YACGTR 3 cut(s) 3560, 4771, 6713
BsaBI GATNNNNATC 6 cut(s) 212, 3339, 5481, 6270, 7056, 8354
BsaHI GRCGYC 2 cut(s) 6253, 7830
BsaI GGTCTC 1 cut(s) 3535
BsaWI WCCGGW 1 cut(s) 8125
Bse21I CCTNAGG 2 cut(s) 4152, 8379
Bse3DI GCAATG 6 cut(s) 2382, 4884, 7582, 7727, 8165, 8468
Bse8I GATNNNNATC 6 cut(s) 212, 3339, 5481, 6270, 7056, 8354
BseCI ATCGAT 3 cut(s) 2363, 5799, 8478
BseJI GATNNNNATC 6 cut(s) 212, 3339, 5481, 6270, 7056, 8354
BseMI GCAATG 6 cut(s) 2382, 4884, 7582, 7727, 8165, 8468
BseSI GKGCMC 4 cut(s) 595, 3524, 3801, 9142
BseYI CCCAGC 4 cut(s) 410, 2380, 3253, 7529
BsgI GTGCAG 8 cut(s) 4921, 5481, 6089, 7530, 8801, 9444, 9699, 10295
Bsh1236I CGCG 2 cut(s) 659, 3507
Bsh1285I CGRYCG 1 cut(s) 64
BshNI GGYRCC 1 cut(s) 8068
BshVI ATCGAT 3 cut(s) 2363, 5799, 8478
BsiEI CGRYCG 1 cut(s) 64
BsiHKAI GWGCWC 6 cut(s) 2407, 2978, 4745, 8953, 9142, 9639
BsiHKCI CYCGRG 3 cut(s) 1733, 3164, 9970
BsiSI CCGG 4 cut(s) 567, 2905, 6598, 8126
BsmBI CGTCTC 2 cut(s) 7837, 8060
BsmI GAATGC 3 cut(s) 2630, 2731, 5130
Bso31I GGTCTC 1 cut(s) 3535
BsoBI CYCGRG 3 cut(s) 1733, 3164, 9970
Bsp119I TTCGAA 3 cut(s) 24, 3875, 6116
Bsp120I GGGCCC 2 cut(s) 591, 3520
Bsp1407I TGTACA 3 cut(s) 905, 3854, 5152
Bsp1720I GCTNAGC 3 cut(s) 4279, 5243, 5634
Bsp19I CCATGG 3 cut(s) 224, 9056, 9285
BspDI ATCGAT 3 cut(s) 2363, 5799, 8478
BspFNI CGCG 2 cut(s) 659, 3507
BspHI TCATGA 4 cut(s) 3367, 4119, 7168, 9238
BspMAI CTGCAG 3 cut(s) 367, 1228, 1585
BspMI ACCTGC 1 cut(s) 6312
BspOI GCTAGC 2 cut(s) 9186, 10142
BspQI GCTCTTC 1 cut(s) 6914
BspT104I TTCGAA 3 cut(s) 24, 3875, 6116
BspT107I GGYRCC 1 cut(s) 8068
BspTI CTTAAG 4 cut(s) 4145, 4456, 8695, 9808
BspTNI GGTCTC 1 cut(s) 3535
BsrBI CCGCTC 1 cut(s) 6907
BsrDI GCAATG 6 cut(s) 2382, 4884, 7582, 7727, 8165, 8468
BsrGI TGTACA 3 cut(s) 905, 3854, 5152
BssNI GRCGYC 2 cut(s) 6253, 7830
Bst6I CTCTTC 8 cut(s) 297, 580, 1028, 1264, 2043, 3421, 6914, 7288
BstACI GRCGYC 2 cut(s) 6253, 7830
BstAFI CTTAAG 4 cut(s) 4145, 4456, 8695, 9808
BstAPI GCANNNNNTGC 2 cut(s) 7526, 7581
BstAUI TGTACA 3 cut(s) 905, 3854, 5152
BstBAI YACGTR 3 cut(s) 3560, 4771, 6713
BstBI TTCGAA 3 cut(s) 24, 3875, 6116
BstDSI CCRYGG 6 cut(s) 224, 657, 1276, 3801, 9056, 9285
BstEII GGTNACC 2 cut(s) 4787, 5351
BstFNI CGCG 2 cut(s) 659, 3507
BstH2I RGCGCY 1 cut(s) 9766
BstHHI GCGC 4 cut(s) 1006, 1463, 5720, 9765
BstMCI CGRYCG 1 cut(s) 64
BstPAI GACNNNNGTC 3 cut(s) 1335, 1903, 5477
BstPI GGTNACC 2 cut(s) 4787, 5351
BstSFI CTRYAG 7 cut(s) 363, 1224, 1581, 4017, 4212, 4305, 7927
BstSLI GKGCMC 4 cut(s) 595, 3524, 3801, 9142
BstSNI TACGTA 1 cut(s) 4771
BstUI CGCG 2 cut(s) 659, 3507
BstV2I GAAGAC 7 cut(s) 265, 4398, 7164, 8989, 9578, 9617, 9770
BstXI CCANNNNNNTGG 2 cut(s) 6136, 6680
Bsu15I ATCGAT 3 cut(s) 2363, 5799, 8478
Bsu36I CCTNAGG 2 cut(s) 4152, 8379
BsuI GTATCC 3 cut(s) 3006, 6539, 7663
BsuTUI ATCGAT 3 cut(s) 2363, 5799, 8478
BtgI CCRYGG 6 cut(s) 224, 657, 1276, 3801, 9056, 9285
BtgZI GCGATG 3 cut(s) 5262, 5670, 10076
BtrI CACGTC 1 cut(s) 1931
BtsI GCAGTG 4 cut(s) 1496, 2884, 6570, 10159
BveI ACCTGC 1 cut(s) 6312
CaiI CAGNNNCTG 1 cut(s) 9338
CciI TCATGA 4 cut(s) 3367, 4119, 7168, 9238
CfoI GCGC 4 cut(s) 1006, 1463, 5720, 9765
Cfr42I CCGCGG 1 cut(s) 660
ClaI ATCGAT 3 cut(s) 2363, 5799, 8478
CseI GACGC 3 cut(s) 2137, 6242, 10115
CsiI ACCWGGT 2 cut(s) 5773, 8071
CspCI CAANNNNNGTGG 6 cut(s) 481, 516, 971, 1006, 1998, 2033
DraI TTTAAA 6 cut(s) 1830, 3552, 3951, 6447, 6688, 7269
DraIII CACNNNGTG 3 cut(s) 755, 5386, 7439
DrdI GACNNNNNNGTC 4 cut(s) 36, 3710, 4727, 9582
DriI GACNNNNNGTC 1 cut(s) 9328
DseDI GACNNNNNNGTC 4 cut(s) 36, 3710, 4727, 9582
EaeI YGGCCR 6 cut(s) 375, 1516, 3651, 6228, 8551, 9672
Eam1104I CTCTTC 8 cut(s) 297, 580, 1028, 1264, 2043, 3421, 6914, 7288
Eam1105I GACNNNNNGTC 1 cut(s) 9328
EarI CTCTTC 8 cut(s) 297, 580, 1028, 1264, 2043, 3421, 6914, 7288
Ecl136II GAGCTC 3 cut(s) 2976, 4743, 8951
Eco105I TACGTA 1 cut(s) 4771
Eco147I AGGCCT 2 cut(s) 1660, 9787
Eco24I GRGCYC 6 cut(s) 595, 2978, 3524, 4745, 8953, 9362
Eco31I GGTCTC 1 cut(s) 3535
Eco32I GATATC 1 cut(s) 4195
Eco47I GGWCC 8 cut(s) 244, 1858, 3060, 3408, 3913, 5270, 6803, 8203
Eco47III AGCGCT 1 cut(s) 9764
Eco53kI GAGCTC 3 cut(s) 2976, 4743, 8951
Eco81I CCTNAGG 2 cut(s) 4152, 8379
Eco88I CYCGRG 3 cut(s) 1733, 3164, 9970
Eco91I GGTNACC 2 cut(s) 4787, 5351
EcoICRI GAGCTC 3 cut(s) 2976, 4743, 8951
EcoO109I RGGNCCY 9 cut(s) 244, 591, 1858, 3060, 3520, 3521, 3913, 5177, 8203
EcoO65I GGTNACC 2 cut(s) 4787, 5351
EcoRI GAATTC 3 cut(s) 6118, 9075, 9144
EcoRV GATATC 1 cut(s) 4195
EcoT22I ATGCAT 7 cut(s) 3383, 5079, 6681, 6841, 7310, 7582, 10068
EcoT38I GRGCYC 6 cut(s) 595, 2978, 3524, 4745, 8953, 9362
Esp3I CGTCTC 2 cut(s) 7837, 8060
FauI CCCGC 1 cut(s) 819
FauNDI CATATG 5 cut(s) 2896, 2941, 5644, 6675, 8095
FbaI TGATCA 8 cut(s) 3, 1135, 2767, 4122, 5101, 5559, 6979, 8364
FblI GTMKAC 3 cut(s) 1897, 8260, 10262
FriOI GRGCYC 6 cut(s) 595, 2978, 3524, 4745, 8953, 9362
FspAI RTGCGCAY 1 cut(s) 1462
FspI TGCGCA 2 cut(s) 1005, 1462
GlaI GCGC 4 cut(s) 1005, 1462, 5719, 9764
GsaI CCCAGC 4 cut(s) 414, 2384, 3257, 7533
GsuI CTGGAG 7 cut(s) 152, 967, 1338, 2534, 4988, 6298, 6867
HaeII RGCGCY 1 cut(s) 9766
HapII CCGG 4 cut(s) 567, 2905, 6598, 8126
HgaI GACGC 3 cut(s) 2137, 6242, 10115
HhaI GCGC 4 cut(s) 1006, 1463, 5720, 9765
Hin1I GRCGYC 2 cut(s) 6253, 7830
Hin6I GCGC 4 cut(s) 1004, 1461, 5718, 9763
HinP1I GCGC 4 cut(s) 1004, 1461, 5718, 9763
HincII GTYRAC 8 cut(s) 601, 781, 1099, 1898, 4660, 7254, 9033, 9162
HindII GTYRAC 8 cut(s) 601, 781, 1099, 1898, 4660, 7254, 9033, 9162
HindIII AAGCTT 3 cut(s) 3282, 8692, 9040
HpaI GTTAAC 2 cut(s) 601, 1099
HpaII CCGG 4 cut(s) 567, 2905, 6598, 8126
Hpy99I CGWCG 2 cut(s) 140, 7832
Hsp92I GRCGYC 2 cut(s) 6253, 7830
HspAI GCGC 4 cut(s) 1004, 1461, 5718, 9763
KflI GGGWCCC 2 cut(s) 244, 3913
KpnI GGTACC 1 cut(s) 8072
Ksp22I TGATCA 8 cut(s) 3, 1135, 2767, 4122, 5101, 5559, 6979, 8364
KspAI GTTAAC 2 cut(s) 601, 1099
KspI CCGCGG 1 cut(s) 660
LguI GCTCTTC 1 cut(s) 6914
MabI ACCWGGT 2 cut(s) 5773, 8071
MbiI CCGCTC 1 cut(s) 6907
MfeI CAATTG 8 cut(s) 1143, 2411, 2588, 6258, 7631, 8943, 9165, 10266
MlsI TGGCCA 5 cut(s) 377, 1518, 3653, 8553, 9674
MluNI TGGCCA 5 cut(s) 377, 1518, 3653, 8553, 9674
Mox20I TGGCCA 5 cut(s) 377, 1518, 3653, 8553, 9674
Mph1103I ATGCAT 7 cut(s) 3383, 5079, 6681, 6841, 7310, 7582, 10068
MroXI GAANNNNTTC 5 cut(s) 2108, 4754, 6439, 6990, 7072
MscI TGGCCA 5 cut(s) 377, 1518, 3653, 8553, 9674
Msp20I TGGCCA 5 cut(s) 377, 1518, 3653, 8553, 9674
MspCI CTTAAG 4 cut(s) 4145, 4456, 8695, 9808
MspI CCGG 4 cut(s) 567, 2905, 6598, 8126
MunI CAATTG 8 cut(s) 1143, 2411, 2588, 6258, 7631, 8943, 9165, 10266
Mva1269I GAATGC 3 cut(s) 2630, 2731, 5130
MvnI CGCG 2 cut(s) 659, 3507
NciI CCSGG 2 cut(s) 568, 6598
NcoI CCATGG 3 cut(s) 224, 9056, 9285
NdeI CATATG 5 cut(s) 2896, 2941, 5644, 6675, 8095
NheI GCTAGC 2 cut(s) 9182, 10138
NmeAIII GCCGAG 2 cut(s) 9205, 9821
NsbI TGCGCA 2 cut(s) 1005, 1462
NsiI ATGCAT 7 cut(s) 3383, 5079, 6681, 6841, 7310, 7582, 10068
NspV TTCGAA 3 cut(s) 24, 3875, 6116
OliI CACNNNNGTG 1 cut(s) 7763
PaeI GCATGC 4 cut(s) 2805, 7308, 7584, 10070
PaeR7I CTCGAG 2 cut(s) 1733, 9970
PagI TCATGA 4 cut(s) 3367, 4119, 7168, 9238
PceI AGGCCT 2 cut(s) 1660, 9787
PciI ACATGT 2 cut(s) 908, 3592
PciSI GCTCTTC 1 cut(s) 6914
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 66
PctI GAATGC 3 cut(s) 2630, 2731, 5130
PdmI GAANNNNTTC 5 cut(s) 2108, 4754, 6439, 6990, 7072
PflMI CCANNNNNTGG 3 cut(s) 2590, 7439, 7529
Ppu21I YACGTR 3 cut(s) 3560, 4771, 6713
PpuMI RGGWCCY 5 cut(s) 244, 1858, 3060, 3913, 8203
PscI ACATGT 2 cut(s) 908, 3592
PshAI GACNNNNGTC 3 cut(s) 1335, 1903, 5477
PshBI ATTAAT 5 cut(s) 3425, 4320, 5724, 6086, 9371
PsiI TTATAA 3 cut(s) 6291, 7602, 7704
Psp124BI GAGCTC 3 cut(s) 2978, 4745, 8953
Psp1406I AACGTT 1 cut(s) 2784
Psp5II RGGWCCY 5 cut(s) 244, 1858, 3060, 3913, 8203
PspEI GGTNACC 2 cut(s) 4787, 5351
PspFI CCCAGC 4 cut(s) 410, 2380, 3253, 7529
PspOMI GGGCCC 2 cut(s) 591, 3520
PspPPI RGGWCCY 5 cut(s) 244, 1858, 3060, 3913, 8203
PspXI VCTCGAGB 2 cut(s) 1733, 9970
PstI CTGCAG 3 cut(s) 367, 1228, 1585
PstNI CAGNNNCTG 1 cut(s) 9338
PvuII CAGCTG 7 cut(s) 1223, 2130, 5495, 6658, 8549, 9266, 9683
SacI GAGCTC 3 cut(s) 2978, 4745, 8953
SacII CCGCGG 1 cut(s) 660
SalI GTCGAC 1 cut(s) 1896
SapI GCTCTTC 1 cut(s) 6914
ScaI AGTACT 5 cut(s) 818, 1156, 3266, 6990, 9849
SexAI ACCWGGT 2 cut(s) 5773, 8071
SfcI CTRYAG 7 cut(s) 363, 1224, 1581, 4017, 4212, 4305, 7927
Sfr274I CTCGAG 2 cut(s) 1733, 9970
Sfr303I CCGCGG 1 cut(s) 660
SfuI TTCGAA 3 cut(s) 24, 3875, 6116
SgrBI CCGCGG 1 cut(s) 660
SinI GGWCC 8 cut(s) 244, 1858, 3060, 3408, 3913, 5270, 6803, 8203
SlaI CTCGAG 2 cut(s) 1733, 9970
SnaBI TACGTA 1 cut(s) 4771
SpeI ACTAGT 1 cut(s) 9398
SphI GCATGC 4 cut(s) 2805, 7308, 7584, 10070
SseBI AGGCCT 2 cut(s) 1660, 9787
SspI AATATT 8 cut(s) 517, 2137, 2304, 4753, 6477, 6723, 8371, 10306
SstI GAGCTC 3 cut(s) 2978, 4745, 8953
StuI AGGCCT 2 cut(s) 1660, 9787
TaqII GACCGA 4 cut(s) 50, 766, 3517, 4806
TauI GCSGC 3 cut(s) 659, 7484, 7520
Van91I CCANNNNNTGG 3 cut(s) 2590, 7439, 7529
Vha464I CTTAAG 4 cut(s) 4145, 4456, 8695, 9808
VneI GTGCAC 1 cut(s) 9138
VpaK11BI GGWCC 8 cut(s) 244, 1858, 3060, 3408, 3913, 5270, 6803, 8203
VspI ATTAAT 5 cut(s) 3425, 4320, 5724, 6086, 9371
XcmI CCANNNNNNNNNTGG 6 cut(s) 2509, 2665, 3906, 5873, 7404, 7719
XhoI CTCGAG 2 cut(s) 1733, 9970
XmaJI CCTAGG 2 cut(s) 3404, 7559
XmiI GTMKAC 3 cut(s) 1897, 8260, 10262
XmnI GAANNNNTTC 5 cut(s) 2108, 4754, 6439, 6990, 7072
ZraI GACGTC 1 cut(s) 7831
ZrmI AGTACT 5 cut(s) 818, 1156, 3266, 6990, 9849
Zsp2I ATGCAT 7 cut(s) 3383, 5079, 6681, 6841, 7310, 7582, 10068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.