Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009264

Physical Location & Seq

Genomic Coordinates Reverse (-)

3441109 .. 3443106

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04650.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCACAGGCTCCCACGACGCTCCGTCTCCGCCATCCTGCGCCACGGCGGGGGACGTTACCGGAACTCTGCGGCTCCGATCTCTTGCGCTTCTACACACTGCGGCTCGGTGGGAGAGACTGATGGCAAAGTCAGATGGCACTCCGTGTTGGTCCCTGGGAAGTGTAACCATACCAATTCCACAACTCAGTTTAATTTAAAACATGGCATGTATTTCGGCAATCGGTATGAATCCACGGCTGCAGCCTCTGATGCACCACCCGCCGAGACATACGAGTATCAAGCTGAGGTCAGTCGTCTCATGGACCTCATCGTTAACAGCTTGTACAGTAACAAGGAAGTATTTCTTCGAGAGCTTATCAGCAATGCAAGTGATGCATTGGACAAGCTCCGTTTCCTCAGTGTCACACAGCCTGAGCTTTTGAAGGGTGGAGGTGATCTAGATATCCGTATCCAGACTGATAAAGACAATGGGATCATCAATATCATTGATTCTGGAATCGGTATGACTCGGCAAGAGCTTATTGACTGTCTGGGAACAATTGCACAAAGTGGGACTTCAAAGTTCTTGAAGGCATTGAAGGATAGTAAAGATGCTGGAAGTGATACCAATCTGATTGGTCAGTTTGGTGTCGGCTTTTACTCAGCATTCCTTGTTGCAGATCGGATTGTTGTCTCCACAAAGAGCCCAAAGTCTGACAAGCAATATGTATGGCAAGGAGAGGTGAATGCTAGCTCTTACACAATTCAGGAGGAGATGATCCCGAGAAGCTTATTCCCAGAGGAACCCACATCACCTTGTATCTCAAGCGTGATGACAAAGGTTTTGCTCATCCAGAACGGATTGAAAAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04626 ko04657 ko04915 ko04918 ko05200 ko05215 ko05418 map04141 map04151 map04626 map04657 map04915 map04918 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

286

Amino Acids

31.19

Weight (kDa)

7.65

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07770 AT3G07770 AT3G07770
fragaria_vesca	FvH4_6g41100 FvH4_6g41100
malus_domestica	MD09G1122200.v1.1 MD17G1113200.v1.1
prunus_persica	Prupe.3G201400_v2.0.a1
pyrus_communis	pycom09g04650 pycom17g10480
rosa_chinensis	RchiOBHm_Chr2g0156661
rosa_laevigata	RLG00000020929
rosa_multiflora	Rmu_sc0001130.1_g000001 Rmu_sc0018228.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092860
rosa_rugosa	Rorug02G0455200
rosa_samantha	Rh2AG520800 Rh2BG534000 Rh2CG505800 Rh2DG542800
rosa_wichuraiana	Rw0G013720 Rw2G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	30, 48, 71, 102, 261
AclWI	GGATC	2 cut(s)	482, 754
AdeI	CACNNNGTG	2 cut(s)	145, 551
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	5 cut(s)	424, 561, 571, 580, 847
AhdI	GACNNNNNGTC	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	9 cut(s)	284, 321, 355, 388, 418, 520, 735, 771, 852
AluI	AGCT	9 cut(s)	284, 321, 355, 388, 418, 520, 735, 771, 852
Alw26I	GTCTC	5 cut(s)	31, 110, 260, 302, 679
AlwI	GGATC	2 cut(s)	482, 754
AlwNI	CAGNNNCTG	1 cut(s)	248
Ama87I	CYCGRG	1 cut(s)	763
ApeKI	GCWGC	2 cut(s)	239, 242
ArsI	GACNNNNNNTTYG	2 cut(s)	808, 840
Asp700I	GAANNNNTTC	1 cut(s)	342
AspLEI	GCGC	2 cut(s)	42, 89
AspS9I	GGNCC	2 cut(s)	151, 304
AsuHPI	GGTGA	3 cut(s)	446, 736, 786
AsuNHI	GCTAGC	1 cut(s)	731
AvaI	CYCGRG	1 cut(s)	763
AvaII	GGWCC	2 cut(s)	151, 304
BanII	GRGCYC	1 cut(s)	689
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	226, 254
BccI	CCATC	3 cut(s)	41, 116, 129
BceAI	ACGGC	2 cut(s)	61, 252
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	1 cut(s)	156
BciVI	GTATCC	1 cut(s)	461
BcoDI	GTCTC	5 cut(s)	31, 110, 260, 302, 679
BfaI	CTAG	2 cut(s)	440, 732
BfmI	CTRYAG	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	461
BisI	GCNGC	4 cut(s)	72, 103, 240, 243
BlsI	GCNGC	4 cut(s)	73, 104, 241, 244
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	2 cut(s)	151, 304
BmeRI	GACNNNNNGTC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	763
BmgT120I	GGNCC	2 cut(s)	151, 304
BmiI	GGNNCC	4 cut(s)	11, 75, 153, 786
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	3 cut(s)	241, 364, 583
BmtI	GCTAGC	1 cut(s)	735
Bpu10I	CCTNAGC	2 cut(s)	285, 414
BpuEI	CTTGAG	1 cut(s)	790
BsaBI	GATNNNNATC	1 cut(s)	609
BsaJI	CCNNGG	4 cut(s)	43, 154, 155, 234
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	370
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	4 cut(s)	43, 154, 155, 234
BseGI	GGATG	2 cut(s)	33, 831
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	5 cut(s)	200, 276, 405, 412, 657
BseRI	GAGGAG	1 cut(s)	767
BseXI	GCAGC	2 cut(s)	226, 254
BsiHKCI	CYCGRG	1 cut(s)	763
BsiSI	CCGG	1 cut(s)	61
BslFI	GGGAC	3 cut(s)	66, 137, 568
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	5 cut(s)	31, 110, 260, 302, 679
BsmBI	CGTCTC	2 cut(s)	31, 302
BsmFI	GGGAC	3 cut(s)	66, 137, 568
BsmI	GAATGC	2 cut(s)	647, 733
BsoBI	CYCGRG	1 cut(s)	763
Bsp1286I	GDGCHC	1 cut(s)	689
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	5 cut(s)	78, 436, 474, 661, 759
BspACI	CCGC	5 cut(s)	30, 48, 71, 102, 261
BspCNI	CTCAG	5 cut(s)	199, 277, 406, 411, 656
BspLI	GGNNCC	4 cut(s)	11, 75, 153, 786
BspMAI	CTGCAG	1 cut(s)	244
BspOI	GCTAGC	1 cut(s)	735
BspPI	GGATC	2 cut(s)	482, 754
BsrDI	GCAATG	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	324
BssECI	CCNNGG	4 cut(s)	43, 154, 155, 234
BssMI	GATC	5 cut(s)	78, 436, 474, 661, 759
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	329, 530
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	5 cut(s)	186, 285, 398, 414, 643
BstDSI	CCRYGG	2 cut(s)	43, 234
BstF5I	GGATG	2 cut(s)	33, 831
BstHHI	GCGC	2 cut(s)	42, 89
BstKTI	GATC	5 cut(s)	81, 439, 477, 664, 762
BstMAI	GTCTC	5 cut(s)	31, 110, 260, 302, 679
BstMBI	GATC	5 cut(s)	78, 436, 474, 661, 759
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 260, 374
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	226, 254
BsuI	GTATCC	1 cut(s)	461
BtgI	CCRYGG	2 cut(s)	43, 234
BtsCI	GGATG	2 cut(s)	33, 831
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	97, 406
Cac8I	GCNNGC	1 cut(s)	733
CaiI	CAGNNNCTG	1 cut(s)	248
CfoI	GCGC	2 cut(s)	42, 89
Cfr13I	GGNCC	2 cut(s)	151, 304
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	3 cut(s)	203, 208, 301
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	5 cut(s)	186, 285, 398, 414, 643
DpnI	GATC	5 cut(s)	80, 438, 476, 663, 761
DpnII	GATC	5 cut(s)	78, 436, 474, 661, 759
DraI	TTTAAA	1 cut(s)	198
DraIII	CACNNNGTG	2 cut(s)	145, 551
DriI	GACNNNNNGTC	1 cut(s)	23
Eam1105I	GACNNNNNGTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	689
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	151, 304
Eco88I	CYCGRG	1 cut(s)	763
EcoRII	CCWGG	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	689
Esp3I	CGTCTC	2 cut(s)	31, 302
FaeI	CATG	3 cut(s)	206, 211, 304
FaiI	YATR	9 cut(s)	171, 204, 209, 228, 271, 302, 506, 708, 712
FalI	AAGNNNNNCTT	4 cut(s)	330, 362, 541, 573
FaqI	GGGAC	3 cut(s)	66, 137, 568
FatI	CATG	3 cut(s)	202, 207, 300
FauI	CCCGC	2 cut(s)	41, 268
Fnu4HI	GCNGC	4 cut(s)	72, 103, 240, 243
FokI	GGATG	2 cut(s)	20, 818
FriOI	GRGCYC	1 cut(s)	689
Fsp4HI	GCNGC	4 cut(s)	72, 103, 240, 243
FspBI	CTAG	2 cut(s)	440, 732
GlaI	GCGC	2 cut(s)	41, 88
GluI	GCNGC	4 cut(s)	72, 103, 240, 243
HapII	CCGG	1 cut(s)	61
HgaI	GACGC	1 cut(s)	27
HhaI	GCGC	2 cut(s)	42, 89
Hin1II	CATG	3 cut(s)	206, 211, 304
Hin6I	GCGC	2 cut(s)	40, 87
HinP1I	GCGC	2 cut(s)	40, 87
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	769, 850
HinfI	GANTC	4 cut(s)	230, 491, 498, 508
HpaI	GTTAAC	1 cut(s)	316
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	3 cut(s)	446, 736, 786
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	6 cut(s)	78, 134, 250, 615, 666, 697
Hpy188III	TCNNGA	8 cut(s)	350, 440, 454, 495, 568, 749, 763, 835
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	21
HpyAV	CCTTC	3 cut(s)	418, 565, 574
HpyCH4III	ACNGT	2 cut(s)	329, 530
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	7 cut(s)	4, 242, 254, 368, 377, 545, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 260, 374
HpyF3I	CTNAG	5 cut(s)	186, 285, 398, 414, 643
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	3 cut(s)	206, 211, 304
HspAI	GCGC	2 cut(s)	40, 87
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	5 cut(s)	78, 436, 474, 661, 759
LmnI	GCTCC	4 cut(s)	15, 26, 79, 393
Lsp1109I	GCAGC	2 cut(s)	226, 254
LweI	GCATC	3 cut(s)	241, 364, 583
MaeI	CTAG	2 cut(s)	440, 732
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	4 cut(s)	56, 164, 329, 403
MalI	GATC	5 cut(s)	80, 438, 476, 663, 761
MboI	GATC	5 cut(s)	78, 436, 474, 661, 759
MboII	GAAGA	1 cut(s)	338
MfeI	CAATTG	1 cut(s)	540
MhlI	GDGCHC	1 cut(s)	689
MluCI	AATT	4 cut(s)	175, 193, 540, 744
MlyI	GAGTC	1 cut(s)	502
MnlI	CCTC	8 cut(s)	256, 280, 317, 407, 425, 715, 745, 775
Mph1103I	ATGCAT	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	3 cut(s)	192, 197, 315
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	2 cut(s)	647, 733
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	251, 260, 374
NdeII	GATC	5 cut(s)	78, 436, 474, 661, 759
NheI	GCTAGC	1 cut(s)	731
NlaIII	CATG	3 cut(s)	206, 211, 304
NlaIV	GGNNCC	4 cut(s)	11, 75, 153, 786
NmeAIII	GCCGAG	2 cut(s)	289, 490
NmuCI	GTSAC	1 cut(s)	403
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	1 cut(s)	211
PasI	CCCWGGG	1 cut(s)	155
PctI	GAATGC	2 cut(s)	647, 733
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	3 cut(s)	230, 491, 498
PkrI	GCNGC	4 cut(s)	73, 104, 241, 244
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	4 cut(s)	11, 75, 153, 786
PspPI	GGNCC	2 cut(s)	151, 304
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SaqAI	TTAA	3 cut(s)	192, 197, 315
SatI	GCNGC	4 cut(s)	72, 103, 240, 243
Sau3AI	GATC	5 cut(s)	78, 436, 474, 661, 759
Sau96I	GGNCC	2 cut(s)	151, 304
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	689
SfaNI	GCATC	3 cut(s)	241, 364, 583
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	2 cut(s)	151, 304
SmlI	CTYRAG	1 cut(s)	805
SmoI	CTYRAG	1 cut(s)	805
Sse9I	AATT	4 cut(s)	175, 193, 540, 744
SsiI	CCGC	5 cut(s)	30, 48, 71, 102, 261
SspMI	CTAG	2 cut(s)	440, 732
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	329, 530
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	349
TasI	AATT	4 cut(s)	175, 193, 540, 744
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	2 cut(s)	74, 105
TfiI	GAWTC	3 cut(s)	230, 491, 498
Tru1I	TTAA	3 cut(s)	192, 197, 315
Tru9I	TTAA	3 cut(s)	192, 197, 315
TscAI	CASTG	2 cut(s)	104, 406
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	2 cut(s)	239, 242
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	5 cut(s)	13, 133, 380, 437, 855
TspRI	CASTG	2 cut(s)	104, 406
VpaK11BI	GGWCC	2 cut(s)	151, 304
XbaI	TCTAGA	1 cut(s)	439
XceI	RCATGY	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	2 cut(s)	440, 732
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.