WSTF, HB1, Itc1p, MBD9 motif 1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G12750 |
| fragaria_vesca | FvH4_6g36260 FvH4_6g36260 FvH4_6g36260 |
| malus_domestica | MD09G1170800.v1.1 MD17G1156400.v1.1 |
| prunus_persica | Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 |
| pyrus_communis | pycom09g08850 pycom17g14940 |
| rosa_chinensis | RchiOBHm_Chr2g0148261 |
| rosa_laevigata | RLG00000020330 |
| rosa_multiflora | Rmu_sc0003937.1_g000002 Rmu_sc0015553.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00098960 |
| rosa_rugosa | Rorug02G0405100 |
| rosa_samantha | Rh2AG463700 Rh2BG476800 Rh2CG450500 Rh2DG485500 |
| rosa_wichuraiana | Rw2G037800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2346 |
| Acc36I | ACCTGC | 4 cut(s) | 67, 163, 2602, 3337 |
| AccB1I | GGYRCC | 1 cut(s) | 3368 |
| AccI | GTMKAC | 1 cut(s) | 2838 |
| AciI | CCGC | 6 cut(s) | 416, 1427, 2295, 3356, 3385, 3461 |
| AcoI | YGGCCR | 2 cut(s) | 801, 1182 |
| AcuI | CTGAAG | 7 cut(s) | 1421, 2379, 2439, 2577, 2646, 3276, 3450 |
| AcvI | CACGTG | 1 cut(s) | 1390 |
| AcyI | GRCGYC | 1 cut(s) | 1623 |
| AfaI | GTAC | 8 cut(s) | 648, 714, 915, 1575, 1675, 1963, 2067, 3322 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 419, 905, 1633, 2013, 2208, 2575, 2879 |
| AflIII | ACRYGT | 2 cut(s) | 1964, 3139 |
| AhlI | ACTAGT | 2 cut(s) | 1576, 2750 |
| AjnI | CCWGG | 5 cut(s) | 1669, 2092, 2324, 2563, 2724 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 469, 501, 2454, 2486 |
| AleI | CACNNNNGTG | 1 cut(s) | 1123 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 271, 303, 2874, 2906 |
| Alw21I | GWGCWC | 4 cut(s) | 577, 643, 709, 1130 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2731, 2831 |
| Ama87I | CYCGRG | 1 cut(s) | 89 |
| AoxI | GGCC | 6 cut(s) | 268, 801, 1182, 1392, 2542, 2566 |
| ApaI | GGGCCC | 1 cut(s) | 2546 |
| ApeKI | GCWGC | 6 cut(s) | 146, 149, 1583, 2253, 2399, 3224 |
| AseI | ATTAAT | 2 cut(s) | 549, 1878 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 395, 1033, 1268, 2244 |
| AspLEI | GCGC | 2 cut(s) | 1569, 2776 |
| AspS9I | GGNCC | 8 cut(s) | 269, 410, 1393, 2329, 2542, 2543, 3193, 3382 |
| AsuC2I | CCSGG | 1 cut(s) | 996 |
| AsuHPI | GGTGA | 9 cut(s) | 821, 1663, 1964, 2108, 2170, 2372, 2814, 3316, 3505 |
| AsuII | TTCGAA | 1 cut(s) | 835 |
| AvaI | CYCGRG | 1 cut(s) | 89 |
| AvaII | GGWCC | 4 cut(s) | 410, 2329, 3193, 3382 |
| BaeGI | GKGCMC | 2 cut(s) | 454, 2546 |
| BalI | TGGCCA | 2 cut(s) | 803, 1184 |
| BamHI | GGATCC | 4 cut(s) | 1442, 2198, 2218, 2940 |
| BanI | GGYRCC | 1 cut(s) | 3368 |
| BanII | GRGCYC | 2 cut(s) | 2546, 3535 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1867, 1899 |
| BauI | CACGAG | 1 cut(s) | 568 |
| BbrPI | CACGTG | 1 cut(s) | 1390 |
| BbsI | GAAGAC | 2 cut(s) | 1929, 2817 |
| Bbv12I | GWGCWC | 4 cut(s) | 577, 643, 709, 1130 |
| BbvI | GCAGC | 6 cut(s) | 133, 136, 1595, 2265, 2411, 3211 |
| BccI | CCATC | 8 cut(s) | 40, 301, 401, 958, 2113, 2206, 2594, 3380 |
| BceAI | ACGGC | 3 cut(s) | 144, 283, 3326 |
| BciT130I | CCWGG | 5 cut(s) | 1671, 2094, 2326, 2565, 2726 |
| BciVI | GTATCC | 1 cut(s) | 126 |
| BclI | TGATCA | 2 cut(s) | 1132, 2782 |
| BcnI | CCSGG | 1 cut(s) | 996 |
| BcuI | ACTAGT | 2 cut(s) | 1576, 2750 |
| BfaI | CTAG | 7 cut(s) | 774, 1577, 1706, 1796, 2250, 2751, 2981 |
| BfmI | CTRYAG | 4 cut(s) | 249, 2193, 3079, 3474 |
| BfuAI | ACCTGC | 4 cut(s) | 67, 163, 2602, 3337 |
| BfuI | GTATCC | 1 cut(s) | 126 |
| BglII | AGATCT | 1 cut(s) | 1532 |
| BisI | GCNGC | 7 cut(s) | 147, 150, 1584, 2254, 2400, 3225, 3461 |
| BlsI | GCNGC | 7 cut(s) | 148, 151, 1585, 2255, 2401, 3226, 3462 |
| BmcAI | AGTACT | 1 cut(s) | 1575 |
| Bme1390I | CCNGG | 6 cut(s) | 996, 1671, 2094, 2326, 2565, 2726 |
| Bme18I | GGWCC | 4 cut(s) | 410, 2329, 3193, 3382 |
| BmeT110I | CYCGRG | 1 cut(s) | 89 |
| BmgT120I | GGNCC | 8 cut(s) | 269, 410, 1393, 2329, 2542, 2543, 3193, 3382 |
| BmiI | GGNNCC | 9 cut(s) | 271, 1036, 1444, 2200, 2220, 2330, 2544, 2942, 3370 |
| BmrFI | CCNGG | 6 cut(s) | 996, 1671, 2094, 2326, 2565, 2726 |
| BmrI | ACTGGG | 1 cut(s) | 1130 |
| BmsI | GCATC | 2 cut(s) | 3250, 3493 |
| BmuI | ACTGGG | 1 cut(s) | 1130 |
| BpiI | GAAGAC | 2 cut(s) | 1929, 2817 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2414, 2446 |
| BpmI | CTGGAG | 9 cut(s) | 357, 450, 561, 627, 693, 1106, 1233, 1950, 2901 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1628, 3183 |
| Bpu14I | TTCGAA | 1 cut(s) | 835 |
| BpuEI | CTTGAG | 2 cut(s) | 259, 1329 |
| BpuMI | CCSGG | 1 cut(s) | 996 |
| Bsa29I | ATCGAT | 1 cut(s) | 2079 |
| BsaAI | YACGTR | 1 cut(s) | 1390 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3177 |
| BsaHI | GRCGYC | 1 cut(s) | 1623 |
| BsaJI | CCNNGG | 4 cut(s) | 1235, 2315, 2325, 2563 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 271, 301, 559, 589, 2874, 2904 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 419, 905, 1633, 2013, 2208, 2575, 2879 |
| Bse3DI | GCAATG | 5 cut(s) | 138, 1068, 1617, 3234, 3438 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3177 |
| BseBI | CCWGG | 5 cut(s) | 1671, 2094, 2326, 2565, 2726 |
| BseCI | ATCGAT | 1 cut(s) | 2079 |
| BseDI | CCNNGG | 4 cut(s) | 1235, 2315, 2325, 2563 |
| BseGI | GGATG | 6 cut(s) | 412, 1078, 1856, 2089, 2217, 2665 |
| BseJI | GATNNNNATC | 1 cut(s) | 3177 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 419, 905, 1633, 2013, 2208, 2575, 2879 |
| BseMI | GCAATG | 5 cut(s) | 138, 1068, 1617, 3234, 3438 |
| BseMII | CTCAG | 7 cut(s) | 96, 1728, 2823, 3174, 3327, 3328, 3531 |
| BseRI | GAGGAG | 5 cut(s) | 122, 214, 217, 279, 1094 |
| BseSI | GKGCMC | 2 cut(s) | 454, 2546 |
| BseXI | GCAGC | 6 cut(s) | 133, 136, 1595, 2265, 2411, 3211 |
| BseYI | CCCAGC | 1 cut(s) | 3268 |
| BsgI | GTGCAG | 1 cut(s) | 2486 |
| BshFI | GGCC | 6 cut(s) | 270, 803, 1184, 1394, 2544, 2568 |
| BshNI | GGYRCC | 1 cut(s) | 3368 |
| BshVI | ATCGAT | 1 cut(s) | 2079 |
| BsiHKAI | GWGCWC | 4 cut(s) | 577, 643, 709, 1130 |
| BsiHKCI | CYCGRG | 1 cut(s) | 89 |
| BsiSI | CCGG | 2 cut(s) | 995, 2795 |
| BslFI | GGGAC | 1 cut(s) | 1634 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 419, 905, 1633, 2013, 2208, 2575, 2879 |
| BsmFI | GGGAC | 1 cut(s) | 1634 |
| BsmI | GAATGC | 5 cut(s) | 143, 2167, 2244, 2246, 3401 |
| BsnI | GGCC | 6 cut(s) | 270, 803, 1184, 1394, 2544, 2568 |
| BsoBI | CYCGRG | 1 cut(s) | 89 |
| Bsp119I | TTCGAA | 1 cut(s) | 835 |
| Bsp120I | GGGCCC | 1 cut(s) | 2542 |
| Bsp1286I | GDGCHC | 7 cut(s) | 454, 577, 643, 709, 1130, 2546, 3535 |
| BspACI | CCGC | 6 cut(s) | 416, 1427, 2295, 3356, 3385, 3461 |
| BspANI | GGCC | 6 cut(s) | 270, 803, 1184, 1394, 2544, 2568 |
| BspCNI | CTCAG | 7 cut(s) | 97, 1729, 2824, 3175, 3327, 3328, 3532 |
| BspDI | ATCGAT | 1 cut(s) | 2079 |
| BspHI | TCATGA | 2 cut(s) | 1354, 3049 |
| BspLI | GGNNCC | 9 cut(s) | 271, 1036, 1444, 2200, 2220, 2330, 2544, 2942, 3370 |
| BspMAI | CTGCAG | 3 cut(s) | 2197, 3083, 3478 |
| BspMI | ACCTGC | 4 cut(s) | 67, 163, 2602, 3337 |
| BspT104I | TTCGAA | 1 cut(s) | 835 |
| BspT107I | GGYRCC | 1 cut(s) | 3368 |
| BsrDI | GCAATG | 5 cut(s) | 138, 1068, 1617, 3234, 3438 |
| BssECI | CCNNGG | 4 cut(s) | 1235, 2315, 2325, 2563 |
| BssNI | GRCGYC | 1 cut(s) | 1623 |
| BssSI | CACGAG | 1 cut(s) | 568 |
| BssT1I | CCWWGG | 2 cut(s) | 1235, 2315 |
| Bst2BI | CACGAG | 1 cut(s) | 568 |
| Bst2UI | CCWGG | 5 cut(s) | 1671, 2094, 2326, 2565, 2726 |
| Bst4CI | ACNGT | 7 cut(s) | 748, 1269, 1958, 2065, 2733, 3129, 3406 |
| Bst6I | CTCTTC | 7 cut(s) | 191, 444, 492, 952, 1523, 2415, 2622 |
| BstACI | GRCGYC | 1 cut(s) | 1623 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1467, 3087, 3233 |
| BstBAI | YACGTR | 1 cut(s) | 1390 |
| BstBI | TTCGAA | 1 cut(s) | 835 |
| BstC8I | GCNNGC | 7 cut(s) | 540, 705, 756, 1159, 1182, 2057, 3234 |
| BstDEI | CTNAG | 9 cut(s) | 105, 327, 1628, 1737, 2832, 3183, 3314, 3336, 3540 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1631 |
| BstF5I | GGATG | 6 cut(s) | 412, 1078, 1856, 2089, 2217, 2665 |
| BstHHI | GCGC | 2 cut(s) | 1569, 2776 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 1167, 1467, 2171, 2250, 2639, 3087, 3233, 3449 |
| BstNI | CCWGG | 5 cut(s) | 1671, 2094, 2326, 2565, 2726 |
| BstNSI | RCATGY | 9 cut(s) | 542, 1161, 1968, 2059, 3143, 3153, 3236, 3456, 3578 |
| BstSCI | CCNGG | 6 cut(s) | 994, 1669, 2092, 2324, 2563, 2724 |
| BstSFI | CTRYAG | 4 cut(s) | 249, 2193, 3079, 3474 |
| BstSLI | GKGCMC | 2 cut(s) | 454, 2546 |
| BstV1I | GCAGC | 6 cut(s) | 133, 136, 1595, 2265, 2411, 3211 |
| BstV2I | GAAGAC | 2 cut(s) | 1929, 2817 |
| BstX2I | RGATCY | 6 cut(s) | 1442, 1532, 2198, 2218, 2426, 2940 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 235 |
| BstYI | RGATCY | 6 cut(s) | 1442, 1532, 2198, 2218, 2426, 2940 |
| Bsu15I | ATCGAT | 1 cut(s) | 2079 |
| BsuI | GTATCC | 1 cut(s) | 126 |
| BsuRI | GGCC | 6 cut(s) | 270, 803, 1184, 1394, 2544, 2568 |
| BsuTUI | ATCGAT | 1 cut(s) | 2079 |
| BtsCI | GGATG | 6 cut(s) | 412, 1078, 1856, 2089, 2217, 2665 |
| BtsI | GCAGTG | 2 cut(s) | 1978, 3076 |
| BtsIMutI | CAGTG | 9 cut(s) | 235, 826, 1118, 1963, 1978, 2070, 2605, 2729, 3076 |
| BveI | ACCTGC | 4 cut(s) | 67, 163, 2602, 3337 |
| Cac8I | GCNNGC | 7 cut(s) | 540, 705, 756, 1159, 1182, 2057, 3234 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2731, 2831 |
| CciI | TCATGA | 2 cut(s) | 1354, 3049 |
| CfoI | GCGC | 2 cut(s) | 1569, 2776 |
| Cfr13I | GGNCC | 8 cut(s) | 269, 410, 1393, 2329, 2542, 2543, 3193, 3382 |
| ClaI | ATCGAT | 1 cut(s) | 2079 |
| CseI | GACGC | 2 cut(s) | 1631, 3432 |
| Csp6I | GTAC | 8 cut(s) | 647, 713, 914, 1574, 1674, 1962, 2066, 3321 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1050, 1085 |
| CviQI | GTAC | 8 cut(s) | 647, 713, 914, 1574, 1674, 1962, 2066, 3321 |
| DdeI | CTNAG | 9 cut(s) | 105, 327, 1628, 1737, 2832, 3183, 3314, 3336, 3540 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2346 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2346 |
| EaeI | YGGCCR | 2 cut(s) | 801, 1182 |
| Eam1104I | CTCTTC | 7 cut(s) | 191, 444, 492, 952, 1523, 2415, 2622 |
| EarI | CTCTTC | 7 cut(s) | 191, 444, 492, 952, 1523, 2415, 2622 |
| Eco130I | CCWWGG | 2 cut(s) | 1235, 2315 |
| Eco24I | GRGCYC | 2 cut(s) | 2546, 3535 |
| Eco47I | GGWCC | 4 cut(s) | 410, 2329, 3193, 3382 |
| Eco57I | CTGAAG | 7 cut(s) | 1421, 2379, 2439, 2577, 2646, 3276, 3450 |
| Eco72I | CACGTG | 1 cut(s) | 1390 |
| Eco88I | CYCGRG | 1 cut(s) | 89 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1631 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2543, 3193 |
| EcoRI | GAATTC | 3 cut(s) | 1520, 1716, 1993 |
| EcoRII | CCWGG | 5 cut(s) | 1669, 2092, 2324, 2563, 2724 |
| EcoT14I | CCWWGG | 2 cut(s) | 1235, 2315 |
| EcoT22I | ATGCAT | 3 cut(s) | 1159, 2246, 3234 |
| EcoT38I | GRGCYC | 2 cut(s) | 2546, 3535 |
| ErhI | CCWWGG | 2 cut(s) | 1235, 2315 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1416, 1448, 3160, 3192 |
| FaqI | GGGAC | 1 cut(s) | 1634 |
| FauNDI | CATATG | 1 cut(s) | 2343 |
| FbaI | TGATCA | 2 cut(s) | 1132, 2782 |
| FblI | GTMKAC | 1 cut(s) | 2838 |
| Fnu4HI | GCNGC | 7 cut(s) | 147, 150, 1584, 2254, 2400, 3225, 3461 |
| FokI | GGATG | 6 cut(s) | 419, 1085, 1843, 2076, 2224, 2672 |
| FriOI | GRGCYC | 2 cut(s) | 2546, 3535 |
| Fsp4HI | GCNGC | 7 cut(s) | 147, 150, 1584, 2254, 2400, 3225, 3461 |
| FspBI | CTAG | 7 cut(s) | 774, 1577, 1706, 1796, 2250, 2751, 2981 |
| GlaI | GCGC | 2 cut(s) | 1568, 2775 |
| GluI | GCNGC | 7 cut(s) | 147, 150, 1584, 2254, 2400, 3225, 3461 |
| GsaI | CCCAGC | 1 cut(s) | 3272 |
| GsuI | CTGGAG | 9 cut(s) | 357, 450, 561, 627, 693, 1106, 1233, 1950, 2901 |
| HaeIII | GGCC | 6 cut(s) | 270, 803, 1184, 1394, 2544, 2568 |
| HapII | CCGG | 2 cut(s) | 995, 2795 |
| HgaI | GACGC | 2 cut(s) | 1631, 3432 |
| HhaI | GCGC | 2 cut(s) | 1569, 2776 |
| Hin1I | GRCGYC | 1 cut(s) | 1623 |
| Hin6I | GCGC | 2 cut(s) | 1567, 2774 |
| HinP1I | GCGC | 2 cut(s) | 1567, 2774 |
| HincII | GTYRAC | 2 cut(s) | 369, 2322 |
| HindII | GTYRAC | 2 cut(s) | 369, 2322 |
| HindIII | AAGCTT | 1 cut(s) | 1403 |
| HpaI | GTTAAC | 1 cut(s) | 369 |
| HpaII | CCGG | 2 cut(s) | 995, 2795 |
| HphI | GGTGA | 9 cut(s) | 821, 1663, 1964, 2108, 2170, 2372, 2814, 3316, 3505 |
| Hpy166II | GTNNAC | 9 cut(s) | 369, 1013, 1664, 2068, 2322, 2581, 2672, 2839, 3008 |
| Hpy8I | GTNNAC | 9 cut(s) | 369, 1013, 1664, 2068, 2322, 2581, 2672, 2839, 3008 |
| HpyCH4III | ACNGT | 7 cut(s) | 748, 1269, 1958, 2065, 2733, 3129, 3406 |
| HpyCH4IV | ACGT | 4 cut(s) | 454, 1389, 1666, 3319 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 1167, 1467, 2171, 2250, 2639, 3087, 3233, 3449 |
| HpyF3I | CTNAG | 9 cut(s) | 105, 327, 1628, 1737, 2832, 3183, 3314, 3336, 3540 |
| HpySE526I | ACGT | 4 cut(s) | 454, 1389, 1666, 3319 |
| Hsp92I | GRCGYC | 1 cut(s) | 1623 |
| HspAI | GCGC | 2 cut(s) | 1567, 2774 |
| Ksp22I | TGATCA | 2 cut(s) | 1132, 2782 |
| KspAI | GTTAAC | 1 cut(s) | 369 |
| Lsp1109I | GCAGC | 6 cut(s) | 133, 136, 1595, 2265, 2411, 3211 |
| LweI | GCATC | 2 cut(s) | 3250, 3493 |
| MaeI | CTAG | 7 cut(s) | 774, 1577, 1706, 1796, 2250, 2751, 2981 |
| MaeII | ACGT | 4 cut(s) | 454, 1389, 1666, 3319 |
| MaeIII | GTNAC | 8 cut(s) | 120, 825, 859, 924, 1204, 1952, 2603, 2746 |
| MfeI | CAATTG | 3 cut(s) | 71, 2166, 3237 |
| MflI | RGATCY | 6 cut(s) | 1442, 1532, 2198, 2218, 2426, 2940 |
| MhlI | GDGCHC | 7 cut(s) | 454, 577, 643, 709, 1130, 2546, 3535 |
| MlsI | TGGCCA | 2 cut(s) | 803, 1184 |
| MluNI | TGGCCA | 2 cut(s) | 803, 1184 |
| MlyI | GAGTC | 6 cut(s) | 428, 1808, 1919, 2095, 2356, 3251 |
| MmeI | TCCRAC | 1 cut(s) | 6 |
| Mox20I | TGGCCA | 2 cut(s) | 803, 1184 |
| Mph1103I | ATGCAT | 3 cut(s) | 1159, 2246, 3234 |
| MroXI | GAANNNNTTC | 4 cut(s) | 395, 1033, 1268, 2244 |
| MscI | TGGCCA | 2 cut(s) | 803, 1184 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1123, 2094, 2962, 3036 |
| Msp20I | TGGCCA | 2 cut(s) | 803, 1184 |
| MspA1I | CMGCKG | 1 cut(s) | 1586 |
| MspI | CCGG | 2 cut(s) | 995, 2795 |
| MspR9I | CCNGG | 6 cut(s) | 996, 1671, 2094, 2326, 2565, 2726 |
| MunI | CAATTG | 3 cut(s) | 71, 2166, 3237 |
| Mva1269I | GAATGC | 5 cut(s) | 143, 2167, 2244, 2246, 3401 |
| MvaI | CCWGG | 5 cut(s) | 1671, 2094, 2326, 2565, 2726 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 1167, 1467, 2171, 2250, 2639, 3087, 3233, 3449 |
| NciI | CCSGG | 1 cut(s) | 996 |
| NdeI | CATATG | 1 cut(s) | 2343 |
| NlaIV | GGNNCC | 9 cut(s) | 271, 1036, 1444, 2200, 2220, 2330, 2544, 2942, 3370 |
| NmuCI | GTSAC | 5 cut(s) | 120, 825, 1204, 1952, 2603 |
| NsiI | ATGCAT | 3 cut(s) | 1159, 2246, 3234 |
| NspI | RCATGY | 9 cut(s) | 542, 1161, 1968, 2059, 3143, 3153, 3236, 3456, 3578 |
| NspV | TTCGAA | 1 cut(s) | 835 |
| OliI | CACNNNNGTG | 1 cut(s) | 1123 |
| PaeI | GCATGC | 4 cut(s) | 542, 1161, 2059, 3236 |
| PaeR7I | CTCGAG | 1 cut(s) | 89 |
| PagI | TCATGA | 2 cut(s) | 1354, 3049 |
| PciI | ACATGT | 2 cut(s) | 1964, 3139 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3316 |
| PctI | GAATGC | 5 cut(s) | 143, 2167, 2244, 2246, 3401 |
| PdmI | GAANNNNTTC | 4 cut(s) | 395, 1033, 1268, 2244 |
| PkrI | GCNGC | 7 cut(s) | 148, 151, 1585, 2255, 2401, 3226, 3462 |
| PleI | GAGTC | 6 cut(s) | 428, 1807, 1919, 2094, 2355, 3250 |
| PmaCI | CACGTG | 1 cut(s) | 1390 |
| PmlI | CACGTG | 1 cut(s) | 1390 |
| PpsI | GAGTC | 6 cut(s) | 428, 1807, 1919, 2094, 2355, 3250 |
| Ppu21I | YACGTR | 1 cut(s) | 1390 |
| PpuMI | RGGWCCY | 1 cut(s) | 3193 |
| PscI | ACATGT | 2 cut(s) | 1964, 3139 |
| PshBI | ATTAAT | 2 cut(s) | 549, 1878 |
| Psp5II | RGGWCCY | 1 cut(s) | 3193 |
| Psp6I | CCWGG | 5 cut(s) | 1669, 2092, 2324, 2563, 2724 |
| PspCI | CACGTG | 1 cut(s) | 1390 |
| PspFI | CCCAGC | 1 cut(s) | 3268 |
| PspGI | CCWGG | 5 cut(s) | 1669, 2092, 2324, 2563, 2724 |
| PspN4I | GGNNCC | 9 cut(s) | 271, 1036, 1444, 2200, 2220, 2330, 2544, 2942, 3370 |
| PspOMI | GGGCCC | 1 cut(s) | 2542 |
| PspPI | GGNCC | 8 cut(s) | 269, 410, 1393, 2329, 2542, 2543, 3193, 3382 |
| PspPPI | RGGWCCY | 1 cut(s) | 3193 |
| PstI | CTGCAG | 3 cut(s) | 2197, 3083, 3478 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2731, 2831 |
| PsuI | RGATCY | 6 cut(s) | 1442, 1532, 2198, 2218, 2426, 2940 |
| PvuII | CAGCTG | 1 cut(s) | 1586 |
| RsaI | GTAC | 8 cut(s) | 648, 714, 915, 1575, 1675, 1963, 2067, 3322 |
| RsaNI | GTAC | 8 cut(s) | 647, 713, 914, 1574, 1674, 1962, 2066, 3321 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1123, 2094, 2962, 3036 |
| SatI | GCNGC | 7 cut(s) | 147, 150, 1584, 2254, 2400, 3225, 3461 |
| Sau96I | GGNCC | 8 cut(s) | 269, 410, 1393, 2329, 2542, 2543, 3193, 3382 |
| ScaI | AGTACT | 1 cut(s) | 1575 |
| SchI | GAGTC | 6 cut(s) | 428, 1808, 1919, 2095, 2356, 3251 |
| ScrFI | CCNGG | 6 cut(s) | 996, 1671, 2094, 2326, 2565, 2726 |
| SduI | GDGCHC | 7 cut(s) | 454, 577, 643, 709, 1130, 2546, 3535 |
| SfaNI | GCATC | 2 cut(s) | 3250, 3493 |
| SfcI | CTRYAG | 4 cut(s) | 249, 2193, 3079, 3474 |
| Sfr274I | CTCGAG | 1 cut(s) | 89 |
| SfuI | TTCGAA | 1 cut(s) | 835 |
| SinI | GGWCC | 4 cut(s) | 410, 2329, 3193, 3382 |
| SlaI | CTCGAG | 1 cut(s) | 89 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1123, 2094, 2962, 3036 |
| SmlI | CTYRAG | 3 cut(s) | 89, 274, 1344 |
| SmoI | CTYRAG | 3 cut(s) | 89, 274, 1344 |
| SpeI | ACTAGT | 2 cut(s) | 1576, 2750 |
| SphI | GCATGC | 4 cut(s) | 542, 1161, 2059, 3236 |
| SsiI | CCGC | 6 cut(s) | 416, 1427, 2295, 3356, 3385, 3461 |
| SspI | AATATT | 1 cut(s) | 2132 |
| SspMI | CTAG | 7 cut(s) | 774, 1577, 1706, 1796, 2250, 2751, 2981 |
| StyD4I | CCNGG | 6 cut(s) | 994, 1669, 2092, 2324, 2563, 2724 |
| StyI | CCWWGG | 2 cut(s) | 1235, 2315 |
| TaaI | ACNGT | 7 cut(s) | 748, 1269, 1958, 2065, 2733, 3129, 3406 |
| TaiI | ACGT | 4 cut(s) | 457, 1392, 1669, 3322 |
| TaqI | TCGA | 6 cut(s) | 18, 90, 299, 835, 2079, 2691 |
| TatI | WGTACW | 4 cut(s) | 646, 712, 1573, 2065 |
| TauI | GCSGC | 1 cut(s) | 3463 |
| TscAI | CASTG | 9 cut(s) | 235, 826, 1125, 1963, 1978, 2077, 2612, 2736, 3083 |
| TseFI | GTSAC | 5 cut(s) | 120, 825, 1204, 1952, 2603 |
| TseI | GCWGC | 6 cut(s) | 146, 149, 1583, 2253, 2399, 3224 |
| Tsp45I | GTSAC | 5 cut(s) | 120, 825, 1204, 1952, 2603 |
| TspGWI | ACGGA | 5 cut(s) | 108, 389, 1862, 2953, 3507 |
| TspRI | CASTG | 9 cut(s) | 235, 826, 1125, 1963, 1978, 2077, 2612, 2736, 3083 |
| VpaK11BI | GGWCC | 4 cut(s) | 410, 2329, 3193, 3382 |
| VspI | ATTAAT | 2 cut(s) | 549, 1878 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1631 |
| XceI | RCATGY | 9 cut(s) | 542, 1161, 1968, 2059, 3143, 3153, 3236, 3456, 3578 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 2100, 2209, 2322 |
| XhoI | CTCGAG | 1 cut(s) | 89 |
| XmiI | GTMKAC | 1 cut(s) | 2838 |
| XmnI | GAANNNNTTC | 4 cut(s) | 395, 1033, 1268, 2244 |
| XspI | CTAG | 7 cut(s) | 774, 1577, 1706, 1796, 2250, 2751, 2981 |
| ZrmI | AGTACT | 1 cut(s) | 1575 |
| Zsp2I | ATGCAT | 3 cut(s) | 1159, 2246, 3234 |