Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007270

Physical Location & Seq

Genomic Coordinates Reverse (-)

51726777 .. 51734048

Gene Structure 7272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0405100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2745 bp

ATGAGCGCGGGTGGTGCCTTTGGCGGTAATAGGGGAGTCAGTCCAGTTCCTCCTGAGAAAGGTGTCTTCCCTTTGGATCATATGCATTTGTGTGACCAGGCGAAAAGGGAATACCTCAATTGTCTGAAAACTTCGGGCCACCAATCTGAAAAGTGCAGACAATTCTCAAAATTGTACCTGGAGTGCCGCATGGAAAAGAACTTGATGGCAAAGCAAGACATGTCAGAACTTGGATTTGTAAAGGAAAATGGTAAAGAAGCTTCTGAAGAGAAGATTACTGAGAGGATCGATGGAGCTAGCCACTATTATGATGTTCCTTTTACCCTTGGCCTCAAAGTTTTTTCATATCAGGAGGATCGTAAGAAACAACCTTTCGAGCTTTGCAGAACCTGCGTCTGCAATTGGCAACAGAAGTCTTTCTCCCGGAAAGAGTTTGGTTCAGGAATGAAGGGAATGGCACCAACCGGGACAGGTACTTTGCGCACTCTCACTCTTTGCCTCGATGACTACGATGAAAGCCTGTCCTTTTATAACTTACATGGTTCATTGTACCTTCCCTTTTCTCCTTTTCGGTTCTCCATGGCTTCCCATTTCTCTCCGCTCAAACCTTATCTCTCTTACCACTCAAGATCTGTTAGACCAGAAAACAGACAAACTATAACCAATTTGCATCAACCTACAAGGTGCAGTACAAAGGAACAAGGAACTTATGGCTTTCCAAAGAAAAGTCTCTTGTGTACCTTATTGTCTAGATGTTACCCTTCGTCAAGGTGGTCTTCATCTAGAACAGTATCATCTACAGTTTGTAAAGCTTATTCTGGTGAAGCAAGTAGTGAGAATGGTGCTGCGGTGGCTAAAATCCATGACCATGAAATTGAATTTAATCGGGTCAATTGCCTTGTGTGGGTGCTGCATGAATCTGCTAGGAGCTTCTCCCTTGCAATTGAGTCGCTAGAATTGACAGGAAGTAGTCCTGGGGTTGCAATGTCATGGTCTGGGAAGGATATACATGCATGGCATAAACGGATTTCTTATCAGGTGGCACTTTATGCGTTGTTGAAAACAGCAATTGAAGTAGAAACTTTGCTTTCTAGTGAACGTCATTACTGTGACTCTTCTCCAGTTTGCGATATCTTAACCACAAAGATCAATTCAGTTGGAGAGCACATTGAGAGTCAATTGAACATGAGGCACTCAGAATTAGTAGAATGGTTTAGAGTGGTGGAGTTCCCACGGATTGCAGGATTTTTCATTCCTTTGTTAAGGAAGTGGTCTATGGAGTATGCAGGAAGTGGTGTAGCAGGGATAGTTGTGGCTATCAGCTGCTGTGCTGCAGTGGCTAAATTGGGTCCTGGGCGTGTAAAGTGTCCATTTTTTGCATTTTCTATTGAGGATGTAATGGTAGAGCTCATGGATCTCTCACACAGTCTTGTATCAGTGGAAAGATTACATCACTTGGCCATTGAGGCAGGATTTGAATTGGATTTTCTGTCCCATTTTGGTAGAAAGGTTCTGCTAAGCAACAAAGGGGAAGAGGTTGAATTTTGGATTGGGTTGGCTTATGAAAAACTTTCATCAGCATTTCACAAAGAAAGTGTGATTCCAGGCAAGCAGAATTTTCGGGACAAGGTTCAAGCAGATACTTTGGCTACTTTGGGACTGTTTGCATATCTTGGAAGAAAGACTAGATTATTCTTGTCAACAATGGGCATAAACGATATTGATGATCTACTTAAGGACTTCCTTAGCTACTTGGAGTGTGGTAGCATTTTCATTTACCCAGAGTTTGCTTCCATAGCAGTGTATCAACAGTTCATGGAGGTAGTAACTGATGAAATTGGATGGCTTGATTTTTACGCTGCATGTCCTCCAAAAAGTATTCAAGAGAGACGAAAAAGCAAATTGCATACGATTCAGGCGGAAAAAGAGATTGCTCTCTCTGCTGTATTTACTGTATGCTATGATGTCTACTCTGGATTTGCTCACTTTTATCGTTCAACTCAACTGTCCCTGGATAGTGATTTGCTAGAATTTTTGCTCCAGAGTCAGAGCTTGCTTACTATTTGTTTGGAAGACTACTGGTCTGCTTATGATAAATCAAGTGATTGGTCAATGATTGCAGACTGTGGTTGTGTTGCAACCAAGGTATCAACAATCCCCACGAAGGTATCTTTAACAATGGACGCACATGATGCACAATGGGAGCCAAGTCACTTAAAAACCGCCGGAGATAGTGAAAAGCATAGGTCTAAACACAGTCTTCAACTGAGAACGGCTCCACGCTTGCTTGGGATGGAAAGCATAACGTCTATGGAGGAGGGCAGTGCCAGAAAACAAAGACATCTCTATCGAATATTGATTAAAAAGTACAGCGATCACTTGGTATCTACAGGCTCTGATGCATGGATGGGTACTCACTTGCTTTTCATAGACCTCATGAGTGCTTTGGAGCTGCTCCTGAAACAATTGCGTGGCCACAAGGTTTCAAGGAGGGAAAGAAATAAGTTACAAAGGACACTAAATGACATTACTTCACTTGTTCCAGTTACAATTCTAATGCTACTTCCTGTATCTGCTGTAGGCCATGCTGCCATTTTTGCTGCAATCAACAAGTACACACCAGGCTTGATCCCTTCTCCGTATTCTTCTGAGAGGCTTGATGTTGTGAAACAACTAAAGAGAACCAAGAAAATGGAAGTTAGGACATGGAGCAACCTTGAAGATCCACCCTCTAGAATAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT Homeobox WHIM1 WSD

Protein Analysis

914

Amino Acids

103.15

Weight (kDa)

8.16

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12750
fragaria_vesca	FvH4_6g36260 FvH4_6g36260 FvH4_6g36260
malus_domestica	MD09G1170800.v1.1 MD17G1156400.v1.1
prunus_persica	Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1
pyrus_communis	pycom09g08850 pycom17g14940
rosa_chinensis	RchiOBHm_Chr2g0148261
rosa_laevigata	RLG00000020330
rosa_multiflora	Rmu_sc0003937.1_g000002 Rmu_sc0015553.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098960
rosa_rugosa	Rorug02G0405100
rosa_samantha	Rh2AG463700 Rh2BG476800 Rh2CG450500 Rh2DG485500
rosa_wichuraiana	Rw2G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
Acc16I	TGCGCA	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	398
AccB1I	GGYRCC	2 cut(s)	14, 457
AccBSI	CCGCTC	1 cut(s)	601
AccI	GTMKAC	1 cut(s)	1968
AccII	CGCG	1 cut(s)	8
AciI	CCGC	7 cut(s)	8, 24, 187, 599, 848, 1919, 2223
AclWI	GGATC	6 cut(s)	84, 293, 363, 1422, 2623, 2717
AcoI	YGGCCR	2 cut(s)	1458, 2473
AcsI	RAATTY	4 cut(s)	878, 1541, 1615, 2030
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	8 cut(s)	176, 475, 551, 691, 739, 2369, 2413, 2615
AfiI	CCNNNNNNNGG	3 cut(s)	59, 904, 2164
AflII	CTTAAG	1 cut(s)	1733
AflIII	ACRYGT	1 cut(s)	219
AhdI	GACNNNNNGTC	1 cut(s)	2080
AjnI	CCWGG	7 cut(s)	96, 177, 973, 1351, 1603, 2010, 2620
AjuI	GAANNNNNNNTTGG	2 cut(s)	1533, 1565
Alw21I	GWGCWC	2 cut(s)	1167, 1410
Alw26I	GTCTC	2 cut(s)	734, 1882
AlwI	GGATC	6 cut(s)	84, 293, 363, 1422, 2623, 2717
AlwNI	CAGNNNCTG	3 cut(s)	390, 1326, 2396
AoxI	GGCC	5 cut(s)	136, 328, 1458, 2473, 2581
ApeKI	GCWGC	8 cut(s)	845, 910, 1323, 1331, 1859, 2452, 2588, 2600
ApoI	RAATTY	4 cut(s)	878, 1541, 1615, 2030
ArsI	GACNNNNNNTTYG	2 cut(s)	460, 492
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	2 cut(s)	8, 483
AspS9I	GGNCC	2 cut(s)	136, 1349
AsuC2I	CCSGG	2 cut(s)	424, 466
AsuHPI	GGTGA	1 cut(s)	833
AsuNHI	GCTAGC	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	1349
BaeI	ACNNNNGTAYC	4 cut(s)	2130, 2151, 2163, 2184
BalI	TGGCCA	2 cut(s)	1460, 2475
BanI	GGYRCC	2 cut(s)	14, 457
BanII	GRGCYC	1 cut(s)	1410
BarI	GAAGNNNNNNTAC	2 cut(s)	244, 276
BbsI	GAAGAC	4 cut(s)	58, 768, 2079, 2252
Bbv12I	GWGCWC	2 cut(s)	1167, 1410
BbvI	GCAGC	8 cut(s)	832, 897, 1310, 1318, 1846, 2439, 2575, 2587
BccI	CCATC	5 cut(s)	199, 284, 1836, 2287, 2401
BceAI	ACGGC	1 cut(s)	2289
BcgI	CGANNNNNNTGC	4 cut(s)	930, 964, 1601, 1635
BciT130I	CCWGG	7 cut(s)	98, 179, 975, 1353, 1605, 2012, 2622
BcnI	CCSGG	2 cut(s)	424, 466
BcoDI	GTCTC	2 cut(s)	734, 1882
BfaI	CTAG	9 cut(s)	297, 750, 783, 924, 953, 1092, 1686, 2027, 2733
BfmI	CTRYAG	4 cut(s)	798, 1332, 2388, 2577
BfrI	CTTAAG	1 cut(s)	1733
BfuAI	ACCTGC	1 cut(s)	398
BglI	GCCNNNNNGGC	1 cut(s)	1466
BglII	AGATCT	1 cut(s)	629
BisI	GCNGC	9 cut(s)	187, 846, 911, 1324, 1332, 1860, 2453, 2589, 2601
BlpI	GCTNAGC	1 cut(s)	1517
BlsI	GCNGC	9 cut(s)	188, 847, 912, 1325, 1333, 1861, 2454, 2590, 2602
Bme1390I	CCNGG	9 cut(s)	98, 179, 424, 466, 975, 1353, 1605, 2012, 2622
Bme18I	GGWCC	1 cut(s)	1349
BmeRI	GACNNNNNGTC	1 cut(s)	2080
BmgT120I	GGNCC	2 cut(s)	136, 1349
BmiI	GGNNCC	5 cut(s)	16, 459, 1350, 2205, 2277
BmrFI	CCNGG	9 cut(s)	98, 179, 424, 466, 975, 1353, 1605, 2012, 2622
BmsI	GCATC	3 cut(s)	679, 2182, 2389
BmtI	GCTAGC	1 cut(s)	300
BpiI	GAAGAC	4 cut(s)	58, 768, 2079, 2252
BplI	GAGNNNNNCTC	2 cut(s)	2260, 2292
BpmI	CTGGAG	3 cut(s)	200, 1104, 2024
Bpu10I	CCTNAGC	1 cut(s)	1745
Bpu1102I	GCTNAGC	1 cut(s)	1517
BpuEI	CTTGAG	1 cut(s)	610
BpuMI	CCSGG	2 cut(s)	424, 466
Bsa29I	ATCGAT	1 cut(s)	288
BsaJI	CCNNGG	7 cut(s)	325, 579, 974, 1232, 1352, 2010, 2142
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 904, 2164
Bse1I	ACTGG	4 cut(s)	44, 1121, 2084, 2543
Bse3DI	GCAATG	1 cut(s)	990
BseBI	CCWGG	7 cut(s)	98, 179, 975, 1353, 1605, 2012, 2622
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	7 cut(s)	325, 579, 974, 1232, 1352, 2010, 2142
BseGI	GGATG	4 cut(s)	1399, 1847, 2298, 2412
BseLI	CCNNNNNNNGG	3 cut(s)	59, 904, 2164
BseMI	GCAATG	1 cut(s)	990
BseMII	CTCAG	5 cut(s)	45, 270, 1209, 2258, 2640
BseNI	ACTGG	4 cut(s)	44, 1121, 2084, 2543
BseRI	GAGGAG	1 cut(s)	2330
BseXI	GCAGC	8 cut(s)	832, 897, 1310, 1318, 1846, 2439, 2575, 2587
BsgI	GTGCAG	2 cut(s)	175, 706
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	5 cut(s)	138, 330, 1460, 2475, 2583
BshNI	GGYRCC	2 cut(s)	14, 457
BshVI	ATCGAT	1 cut(s)	288
BsiHKAI	GWGCWC	2 cut(s)	1167, 1410
BsiSI	CCGG	3 cut(s)	424, 465, 2226
BslFI	GGGAC	5 cut(s)	481, 1477, 1637, 1671, 1993
BslI	CCNNNNNNNGG	3 cut(s)	59, 904, 2164
BsmAI	GTCTC	2 cut(s)	734, 1882
BsmBI	CGTCTC	1 cut(s)	1882
BsmFI	GGGAC	5 cut(s)	481, 1477, 1637, 1671, 1993
BsnI	GGCC	5 cut(s)	138, 330, 1460, 2475, 2583
Bsp1286I	GDGCHC	2 cut(s)	1167, 1410
Bsp1720I	GCTNAGC	1 cut(s)	1517
Bsp19I	CCATGG	1 cut(s)	579
BspACI	CCGC	7 cut(s)	8, 24, 187, 599, 848, 1919, 2223
BspANI	GGCC	5 cut(s)	138, 330, 1460, 2475, 2583
BspCNI	CTCAG	5 cut(s)	46, 271, 1208, 2259, 2641
BspDI	ATCGAT	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	2436
BspLI	GGNNCC	5 cut(s)	16, 459, 1350, 2205, 2277
BspMAI	CTGCAG	1 cut(s)	1336
BspMI	ACCTGC	1 cut(s)	398
BspOI	GCTAGC	1 cut(s)	300
BspPI	GGATC	6 cut(s)	84, 293, 363, 1422, 2623, 2717
BspT107I	GGYRCC	2 cut(s)	14, 457
BspTI	CTTAAG	1 cut(s)	1733
BsrBI	CCGCTC	1 cut(s)	601
BsrDI	GCAATG	1 cut(s)	990
BsrI	ACTGG	4 cut(s)	44, 1121, 2084, 2543
BssECI	CCNNGG	7 cut(s)	325, 579, 974, 1232, 1352, 2010, 2142
BssT1I	CCWWGG	3 cut(s)	325, 579, 2142
Bst2UI	CCWGG	7 cut(s)	98, 179, 975, 1353, 1605, 2012, 2622
Bst6I	CTCTTC	3 cut(s)	261, 1120, 1527
BstAFI	CTTAAG	1 cut(s)	1733
BstAPI	GCANNNNNTGC	3 cut(s)	390, 1049, 2192
BstC8I	GCNNGC	4 cut(s)	298, 1610, 2054, 2285
BstDEI	CTNAG	7 cut(s)	54, 279, 1195, 1517, 1745, 2267, 2649
BstDSI	CCRYGG	2 cut(s)	579, 1232
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	4 cut(s)	1399, 1847, 2298, 2412
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	8, 483
BstMAI	GTCTC	2 cut(s)	734, 1882
BstNI	CCWGG	7 cut(s)	98, 179, 975, 1353, 1605, 2012, 2622
BstNSI	RCATGY	3 cut(s)	223, 1013, 1866
BstSCI	CCNGG	9 cut(s)	96, 177, 422, 464, 973, 1351, 1603, 2010, 2620
BstSFI	CTRYAG	4 cut(s)	798, 1332, 2388, 2577
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	8 cut(s)	832, 897, 1310, 1318, 1846, 2439, 2575, 2587
BstV2I	GAAGAC	4 cut(s)	58, 768, 2079, 2252
BstX2I	RGATCY	3 cut(s)	629, 1414, 2722
BstXI	CCANNNNNNTGG	1 cut(s)	2692
BstYI	RGATCY	3 cut(s)	629, 1414, 2722
Bsu15I	ATCGAT	1 cut(s)	288
BsuRI	GGCC	5 cut(s)	138, 330, 1460, 2475, 2583
BsuTUI	ATCGAT	1 cut(s)	288
BtgI	CCRYGG	2 cut(s)	579, 1232
BtsCI	GGATG	4 cut(s)	1399, 1847, 2298, 2412
BtsI	GCAGTG	3 cut(s)	1341, 1806, 2329
BtsIMutI	CAGTG	4 cut(s)	1341, 1443, 1806, 2329
BveI	ACCTGC	1 cut(s)	398
Cac8I	GCNNGC	4 cut(s)	298, 1610, 2054, 2285
CaiI	CAGNNNCTG	3 cut(s)	390, 1326, 2396
CciI	TCATGA	1 cut(s)	2436
CfoI	GCGC	2 cut(s)	8, 483
Cfr13I	GGNCC	2 cut(s)	136, 1349
ClaI	ATCGAT	1 cut(s)	288
CseI	GACGC	2 cut(s)	382, 2192
Csp6I	GTAC	8 cut(s)	175, 474, 550, 690, 738, 2368, 2412, 2614
CviQI	GTAC	8 cut(s)	175, 474, 550, 690, 738, 2368, 2412, 2614
DdeI	CTNAG	7 cut(s)	54, 279, 1195, 1517, 1745, 2267, 2649
DriI	GACNNNNNGTC	1 cut(s)	2080
EaeI	YGGCCR	2 cut(s)	1458, 2473
Eam1104I	CTCTTC	3 cut(s)	261, 1120, 1527
Eam1105I	GACNNNNNGTC	1 cut(s)	2080
EarI	CTCTTC	3 cut(s)	261, 1120, 1527
EciI	GGCGGA	1 cut(s)	1934
Ecl136II	GAGCTC	1 cut(s)	1408
Eco130I	CCWWGG	3 cut(s)	325, 579, 2142
Eco24I	GRGCYC	1 cut(s)	1410
Eco32I	GATATC	1 cut(s)	1132
Eco47I	GGWCC	1 cut(s)	1349
Eco53kI	GAGCTC	1 cut(s)	1408
Eco57I	CTGAAG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	1408
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	1349
EcoRII	CCWGG	7 cut(s)	96, 177, 973, 1351, 1603, 2010, 2620
EcoRV	GATATC	1 cut(s)	1132
EcoT14I	CCWWGG	3 cut(s)	325, 579, 2142
EcoT22I	ATGCAT	3 cut(s)	87, 1015, 2404
EcoT38I	GRGCYC	1 cut(s)	1410
ErhI	CCWWGG	3 cut(s)	325, 579, 2142
Esp3I	CGTCTC	1 cut(s)	1882
FalI	AAGNNNNNCTT	2 cut(s)	760, 792
FaqI	GGGAC	5 cut(s)	481, 1477, 1637, 1671, 1993
FauNDI	CATATG	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	1968
Fnu4HI	GCNGC	9 cut(s)	187, 846, 911, 1324, 1332, 1860, 2453, 2589, 2601
FokI	GGATG	4 cut(s)	1406, 1854, 2305, 2419
FriOI	GRGCYC	1 cut(s)	1410
Fsp4HI	GCNGC	9 cut(s)	187, 846, 911, 1324, 1332, 1860, 2453, 2589, 2601
FspBI	CTAG	9 cut(s)	297, 750, 783, 924, 953, 1092, 1686, 2027, 2733
FspI	TGCGCA	1 cut(s)	482
GlaI	GCGC	2 cut(s)	7, 482
GluI	GCNGC	9 cut(s)	187, 846, 911, 1324, 1332, 1860, 2453, 2589, 2601
GsuI	CTGGAG	3 cut(s)	200, 1104, 2024
HaeIII	GGCC	5 cut(s)	138, 330, 1460, 2475, 2583
HapII	CCGG	3 cut(s)	424, 465, 2226
HgaI	GACGC	2 cut(s)	382, 2192
HhaI	GCGC	2 cut(s)	8, 483
Hin6I	GCGC	2 cut(s)	6, 481
HinP1I	GCGC	2 cut(s)	6, 481
HincII	GTYRAC	1 cut(s)	1701
HindII	GTYRAC	1 cut(s)	1701
HindIII	AAGCTT	2 cut(s)	258, 810
HinfI	GANTC	8 cut(s)	36, 917, 947, 1112, 1174, 1600, 1912, 2044
HpaII	CCGG	3 cut(s)	424, 465, 2226
HphI	GGTGA	1 cut(s)	833
Hpy166II	GTNNAC	5 cut(s)	738, 1097, 1701, 1969, 2616
Hpy188I	TCNGA	8 cut(s)	126, 148, 226, 265, 1198, 2049, 2398, 2650
Hpy8I	GTNNAC	5 cut(s)	738, 1097, 1701, 1969, 2616
HpyAV	CCTTC	6 cut(s)	442, 563, 771, 994, 2158, 2643
HpyCH4IV	ACGT	2 cut(s)	1099, 2306
HpyF3I	CTNAG	7 cut(s)	54, 279, 1195, 1517, 1745, 2267, 2649
HpySE526I	ACGT	2 cut(s)	1099, 2306
HspAI	GCGC	2 cut(s)	6, 481
LmnI	GCTCC	8 cut(s)	293, 927, 2043, 2203, 2281, 2449, 2460, 2709
Lsp1109I	GCAGC	8 cut(s)	832, 897, 1310, 1318, 1846, 2439, 2575, 2587
LweI	GCATC	3 cut(s)	679, 2182, 2389
MaeI	CTAG	9 cut(s)	297, 750, 783, 924, 953, 1092, 1686, 2027, 2733
MaeII	ACGT	2 cut(s)	1099, 2306
MaeIII	GTNAC	7 cut(s)	92, 755, 1109, 1825, 2210, 2505, 2545
MbiI	CCGCTC	1 cut(s)	601
MfeI	CAATTG	7 cut(s)	118, 400, 892, 942, 1068, 1178, 2465
MflI	RGATCY	3 cut(s)	629, 1414, 2722
MhlI	GDGCHC	2 cut(s)	1167, 1410
MlsI	TGGCCA	2 cut(s)	1460, 2475
MluNI	TGGCCA	2 cut(s)	1460, 2475
MlyI	GAGTC	5 cut(s)	45, 956, 1106, 1183, 2053
MmeI	TCCRAC	1 cut(s)	1138
Mox20I	TGGCCA	2 cut(s)	1460, 2475
Mph1103I	ATGCAT	3 cut(s)	87, 1015, 2404
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	2 cut(s)	1460, 2475
MseI	TTAA	7 cut(s)	882, 1136, 1262, 1734, 2174, 2216, 2361
MslI	CAYNNNNRTG	5 cut(s)	90, 306, 867, 1107, 1799
Msp20I	TGGCCA	2 cut(s)	1460, 2475
MspA1I	CMGCKG	1 cut(s)	1323
MspCI	CTTAAG	1 cut(s)	1733
MspI	CCGG	3 cut(s)	424, 465, 2226
MspR9I	CCNGG	9 cut(s)	98, 179, 424, 466, 975, 1353, 1605, 2012, 2622
MunI	CAATTG	7 cut(s)	118, 400, 892, 942, 1068, 1178, 2465
MvaI	CCWGG	7 cut(s)	98, 179, 975, 1353, 1605, 2012, 2622
MvnI	CGCG	1 cut(s)	8
NciI	CCSGG	2 cut(s)	424, 466
NcoI	CCATGG	1 cut(s)	579
NdeI	CATATG	1 cut(s)	81
NheI	GCTAGC	1 cut(s)	296
NlaIV	GGNNCC	5 cut(s)	16, 459, 1350, 2205, 2277
NmuCI	GTSAC	3 cut(s)	92, 1109, 2210
NsbI	TGCGCA	1 cut(s)	482
NsiI	ATGCAT	3 cut(s)	87, 1015, 2404
NspI	RCATGY	3 cut(s)	223, 1013, 1866
PagI	TCATGA	1 cut(s)	2436
PciI	ACATGT	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	3 cut(s)	917, 1600, 1912
PfoI	TCCNGGA	1 cut(s)	422
PkrI	GCNGC	9 cut(s)	188, 847, 912, 1325, 1333, 1861, 2454, 2590, 2602
PleI	GAGTC	5 cut(s)	44, 955, 1106, 1182, 2052
PpsI	GAGTC	5 cut(s)	44, 955, 1106, 1182, 2052
PpuMI	RGGWCCY	1 cut(s)	1349
PscI	ACATGT	1 cut(s)	219
PsiI	TTATAA	1 cut(s)	531
Psp124BI	GAGCTC	1 cut(s)	1410
Psp5II	RGGWCCY	1 cut(s)	1349
Psp6I	CCWGG	7 cut(s)	96, 177, 973, 1351, 1603, 2010, 2620
PspGI	CCWGG	7 cut(s)	96, 177, 973, 1351, 1603, 2010, 2620
PspN4I	GGNNCC	5 cut(s)	16, 459, 1350, 2205, 2277
PspPI	GGNCC	2 cut(s)	136, 1349
PspPPI	RGGWCCY	1 cut(s)	1349
PsrI	GAACNNNNNNTAC	2 cut(s)	1796, 1828
PstI	CTGCAG	1 cut(s)	1336
PstNI	CAGNNNCTG	3 cut(s)	390, 1326, 2396
PsuI	RGATCY	3 cut(s)	629, 1414, 2722
PvuII	CAGCTG	1 cut(s)	1323
RsaI	GTAC	8 cut(s)	176, 475, 551, 691, 739, 2369, 2413, 2615
RsaNI	GTAC	8 cut(s)	175, 474, 550, 690, 738, 2368, 2412, 2614
RseI	CAYNNNNRTG	5 cut(s)	90, 306, 867, 1107, 1799
SacI	GAGCTC	1 cut(s)	1410
SaqAI	TTAA	7 cut(s)	882, 1136, 1262, 1734, 2174, 2216, 2361
SatI	GCNGC	9 cut(s)	187, 846, 911, 1324, 1332, 1860, 2453, 2589, 2601
Sau96I	GGNCC	2 cut(s)	136, 1349
SchI	GAGTC	5 cut(s)	45, 956, 1106, 1183, 2053
ScrFI	CCNGG	9 cut(s)	98, 179, 424, 466, 975, 1353, 1605, 2012, 2622
SduI	GDGCHC	2 cut(s)	1167, 1410
SfaNI	GCATC	3 cut(s)	679, 2182, 2389
SfcI	CTRYAG	4 cut(s)	798, 1332, 2388, 2577
SinI	GGWCC	1 cut(s)	1349
SmiMI	CAYNNNNRTG	5 cut(s)	90, 306, 867, 1107, 1799
SmlI	CTYRAG	2 cut(s)	625, 1733
SmoI	CTYRAG	2 cut(s)	625, 1733
SsiI	CCGC	7 cut(s)	8, 24, 187, 599, 848, 1919, 2223
SspI	AATATT	1 cut(s)	2355
SspMI	CTAG	9 cut(s)	297, 750, 783, 924, 953, 1092, 1686, 2027, 2733
SstI	GAGCTC	1 cut(s)	1410
StyD4I	CCNGG	9 cut(s)	96, 177, 422, 464, 973, 1351, 1603, 2010, 2620
StyI	CCWWGG	3 cut(s)	325, 579, 2142
TaiI	ACGT	2 cut(s)	1102, 2309
TaqI	TCGA	4 cut(s)	288, 375, 501, 2350
TatI	WGTACW	3 cut(s)	689, 2367, 2613
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	3 cut(s)	917, 1600, 1912
Tru1I	TTAA	7 cut(s)	882, 1136, 1262, 1734, 2174, 2216, 2361
Tru9I	TTAA	7 cut(s)	882, 1136, 1262, 1734, 2174, 2216, 2361
TscAI	CASTG	4 cut(s)	1341, 1443, 1806, 2329
TseFI	GTSAC	3 cut(s)	92, 1109, 2210
TseI	GCWGC	8 cut(s)	845, 910, 1323, 1331, 1859, 2452, 2588, 2600
Tsp45I	GTSAC	3 cut(s)	92, 1109, 2210
TspGWI	ACGGA	3 cut(s)	1039, 1249, 2628
TspRI	CASTG	4 cut(s)	1341, 1443, 1806, 2329
Vha464I	CTTAAG	1 cut(s)	1733
VpaK11BI	GGWCC	1 cut(s)	1349
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	4 cut(s)	878, 1541, 1615, 2030
XbaI	TCTAGA	3 cut(s)	749, 782, 2732
XceI	RCATGY	3 cut(s)	223, 1013, 1866
XmiI	GTMKAC	1 cut(s)	1968
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	9 cut(s)	297, 750, 783, 924, 953, 1092, 1686, 2027, 2733
Zsp2I	ATGCAT	3 cut(s)	87, 1015, 2404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.