WSTF, HB1, Itc1p, MBD9 motif 1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G12750 |
| fragaria_vesca | FvH4_6g36260 FvH4_6g36260 FvH4_6g36260 |
| malus_domestica | MD09G1170800.v1.1 MD17G1156400.v1.1 |
| prunus_persica | Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 |
| pyrus_communis | pycom09g08850 pycom17g14940 |
| rosa_chinensis | RchiOBHm_Chr2g0148261 |
| rosa_laevigata | RLG00000020330 |
| rosa_multiflora | Rmu_sc0003937.1_g000002 Rmu_sc0015553.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00098960 |
| rosa_rugosa | Rorug02G0405100 |
| rosa_samantha | Rh2AG463700 Rh2BG476800 Rh2CG450500 Rh2DG485500 |
| rosa_wichuraiana | Rw2G037800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 121, 842, 3163 |
| AccB1I | GGYRCC | 1 cut(s) | 3194 |
| AccI | GTMKAC | 2 cut(s) | 1890, 2661 |
| AccII | CGCG | 1 cut(s) | 670 |
| AccIII | TCCGGA | 1 cut(s) | 351 |
| AciI | CCGC | 4 cut(s) | 574, 1407, 2018, 2290 |
| AclWI | GGATC | 6 cut(s) | 220, 416, 1273, 2036, 2049, 3028 |
| AcoI | YGGCCR | 1 cut(s) | 1005 |
| AcsI | RAATTY | 7 cut(s) | 380, 1021, 1206, 1343, 1539, 1825, 2794 |
| AcuI | CTGAAG | 4 cut(s) | 97, 1244, 2202, 2400 |
| AfaI | GTAC | 7 cut(s) | 735, 747, 1117, 1398, 1498, 1786, 3148 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 371, 376, 400, 725, 1456, 2705 |
| AflIII | ACRYGT | 2 cut(s) | 1787, 2975 |
| AhlI | ACTAGT | 1 cut(s) | 638 |
| AjnI | CCWGG | 6 cut(s) | 1492, 1915, 2138, 2147, 2386, 2520 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1239, 1271 |
| AleI | CACNNNNGTG | 1 cut(s) | 943 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2700, 2732 |
| Alw21I | GWGCWC | 3 cut(s) | 229, 529, 950 |
| AlwI | GGATC | 6 cut(s) | 220, 416, 1273, 2036, 2049, 3028 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 811, 2654 |
| Ama87I | CYCGRG | 1 cut(s) | 399 |
| Aor13HI | TCCGGA | 1 cut(s) | 351 |
| AoxI | GGCC | 4 cut(s) | 929, 1005, 2141, 2365 |
| ApaI | GGGCCC | 1 cut(s) | 2369 |
| ApeKI | GCWGC | 4 cut(s) | 104, 107, 1039, 3050 |
| ApoI | RAATTY | 7 cut(s) | 380, 1021, 1206, 1343, 1539, 1825, 2794 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 602, 634 |
| AseI | ATTAAT | 2 cut(s) | 650, 1701 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 347, 764, 1091, 2067 |
| AspLEI | GCGC | 2 cut(s) | 1988, 2599 |
| AspS9I | GGNCC | 6 cut(s) | 362, 2152, 2365, 2366, 3019, 3208 |
| AsuII | TTCGAA | 1 cut(s) | 2409 |
| AvaI | CYCGRG | 1 cut(s) | 399 |
| AvaII | GGWCC | 4 cut(s) | 362, 2152, 3019, 3208 |
| BaeGI | GKGCMC | 2 cut(s) | 406, 2369 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 627, 648, 660, 681 |
| BalI | TGGCCA | 1 cut(s) | 1007 |
| BamHI | GGATCC | 1 cut(s) | 2041 |
| BanI | GGYRCC | 1 cut(s) | 3194 |
| BanII | GRGCYC | 2 cut(s) | 2369, 3361 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1690, 1722 |
| BbsI | GAAGAC | 3 cut(s) | 1752, 2072, 2640 |
| Bbv12I | GWGCWC | 3 cut(s) | 229, 529, 950 |
| BbvI | GCAGC | 4 cut(s) | 91, 94, 1051, 3037 |
| BccI | CCATC | 5 cut(s) | 353, 1920, 2417, 2969, 3206 |
| BceAI | ACGGC | 2 cut(s) | 102, 1109 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 506, 540, 1558, 1592 |
| BciT130I | CCWGG | 6 cut(s) | 1494, 1917, 2140, 2149, 2388, 2522 |
| BciVI | GTATCC | 1 cut(s) | 84 |
| BclI | TGATCA | 2 cut(s) | 952, 2605 |
| BcuI | ACTAGT | 1 cut(s) | 638 |
| BfaI | CTAG | 9 cut(s) | 594, 639, 1529, 1619, 2025, 2073, 2256, 2807, 2859 |
| BfmI | CTRYAG | 4 cut(s) | 417, 2208, 2905, 3300 |
| BfuAI | ACCTGC | 3 cut(s) | 121, 842, 3163 |
| BfuI | GTATCC | 1 cut(s) | 84 |
| BglII | AGATCT | 1 cut(s) | 2809 |
| BisI | GCNGC | 5 cut(s) | 105, 108, 1040, 1407, 3051 |
| BlpI | GCTNAGC | 1 cut(s) | 3162 |
| BlsI | GCNGC | 5 cut(s) | 106, 109, 1041, 1408, 3052 |
| BmcAI | AGTACT | 1 cut(s) | 1398 |
| Bme1390I | CCNGG | 6 cut(s) | 1494, 1917, 2140, 2149, 2388, 2522 |
| Bme18I | GGWCC | 4 cut(s) | 362, 2152, 3019, 3208 |
| BmeT110I | CYCGRG | 1 cut(s) | 399 |
| BmgT120I | GGNCC | 6 cut(s) | 362, 2152, 2365, 2366, 3019, 3208 |
| BmiI | GGNNCC | 6 cut(s) | 856, 2043, 2153, 2367, 2762, 3196 |
| BmrFI | CCNGG | 6 cut(s) | 1494, 1917, 2140, 2149, 2388, 2522 |
| BmrI | ACTGGG | 2 cut(s) | 950, 2440 |
| BmsI | GCATC | 6 cut(s) | 580, 1435, 1802, 3045, 3076, 3319 |
| BmuI | ACTGGG | 2 cut(s) | 950, 2440 |
| BpiI | GAAGAC | 3 cut(s) | 1752, 2072, 2640 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 10, 42, 2237, 2269 |
| BpmI | CTGGAG | 7 cut(s) | 309, 513, 926, 1056, 1773, 2543, 2727 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1451, 3009 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3162 |
| Bpu14I | TTCGAA | 1 cut(s) | 2409 |
| BpuEI | CTTGAG | 2 cut(s) | 68, 323 |
| BsaBI | GATNNNNATC | 2 cut(s) | 72, 435 |
| BsaWI | WCCGGW | 1 cut(s) | 351 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2700, 2730 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 371, 376, 400, 725, 1456, 2705 |
| Bse1I | ACTGG | 8 cut(s) | 530, 677, 945, 1404, 1602, 2357, 2435, 2648 |
| Bse3DI | GCAATG | 5 cut(s) | 96, 888, 1440, 1574, 3232 |
| Bse8I | GATNNNNATC | 2 cut(s) | 72, 435 |
| BseAI | TCCGGA | 1 cut(s) | 351 |
| BseBI | CCWGG | 6 cut(s) | 1494, 1917, 2140, 2149, 2388, 2522 |
| BseGI | GGATG | 9 cut(s) | 436, 898, 1450, 1679, 1817, 1912, 2488, 2961, 3334 |
| BseJI | GATNNNNATC | 2 cut(s) | 72, 435 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 371, 376, 400, 725, 1456, 2705 |
| BseMI | GCAATG | 5 cut(s) | 96, 888, 1440, 1574, 3232 |
| BseMII | CTCAG | 7 cut(s) | 75, 698, 902, 1551, 2604, 3153, 3380 |
| BseNI | ACTGG | 8 cut(s) | 530, 677, 945, 1404, 1602, 2357, 2435, 2648 |
| BseRI | GAGGAG | 3 cut(s) | 172, 175, 206 |
| BseSI | GKGCMC | 2 cut(s) | 406, 2369 |
| BseXI | GCAGC | 4 cut(s) | 91, 94, 1051, 3037 |
| Bsh1236I | CGCG | 1 cut(s) | 670 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1320 |
| BshFI | GGCC | 4 cut(s) | 931, 1007, 2143, 2367 |
| BshNI | GGYRCC | 1 cut(s) | 3194 |
| BsiEI | CGRYCG | 1 cut(s) | 1320 |
| BsiHKAI | GWGCWC | 3 cut(s) | 229, 529, 950 |
| BsiHKCI | CYCGRG | 1 cut(s) | 399 |
| BsiSI | CCGG | 1 cut(s) | 352 |
| BslFI | GGGAC | 1 cut(s) | 741 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 371, 376, 400, 725, 1456, 2705 |
| BsmFI | GGGAC | 1 cut(s) | 741 |
| BsmI | GAATGC | 3 cut(s) | 101, 2069, 3227 |
| BsnI | GGCC | 4 cut(s) | 931, 1007, 2143, 2367 |
| BsoBI | CYCGRG | 1 cut(s) | 399 |
| Bsp119I | TTCGAA | 1 cut(s) | 2409 |
| Bsp120I | GGGCCC | 1 cut(s) | 2365 |
| Bsp1286I | GDGCHC | 6 cut(s) | 229, 406, 529, 950, 2369, 3361 |
| Bsp13I | TCCGGA | 1 cut(s) | 351 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3162 |
| Bsp19I | CCATGG | 1 cut(s) | 1858 |
| Bsp68I | TCGCGA | 1 cut(s) | 670 |
| BspACI | CCGC | 4 cut(s) | 574, 1407, 2018, 2290 |
| BspANI | GGCC | 4 cut(s) | 931, 1007, 2143, 2367 |
| BspCNI | CTCAG | 7 cut(s) | 74, 697, 903, 1552, 2605, 3154, 3379 |
| BspEI | TCCGGA | 1 cut(s) | 351 |
| BspFNI | CGCG | 1 cut(s) | 670 |
| BspHI | TCATGA | 1 cut(s) | 2875 |
| BspLI | GGNNCC | 6 cut(s) | 856, 2043, 2153, 2367, 2762, 3196 |
| BspMAI | CTGCAG | 2 cut(s) | 2909, 3304 |
| BspMI | ACCTGC | 3 cut(s) | 121, 842, 3163 |
| BspPI | GGATC | 6 cut(s) | 220, 416, 1273, 2036, 2049, 3028 |
| BspQI | GCTCTTC | 2 cut(s) | 894, 2511 |
| BspT104I | TTCGAA | 1 cut(s) | 2409 |
| BspT107I | GGYRCC | 1 cut(s) | 3194 |
| BsrDI | GCAATG | 5 cut(s) | 96, 888, 1440, 1574, 3232 |
| BsrI | ACTGG | 8 cut(s) | 530, 677, 945, 1404, 1602, 2357, 2435, 2648 |
| BssNAI | GTATAC | 1 cut(s) | 1891 |
| BssT1I | CCWWGG | 4 cut(s) | 230, 370, 1058, 1858 |
| Bst1107I | GTATAC | 1 cut(s) | 1891 |
| Bst2UI | CCWGG | 6 cut(s) | 1494, 1917, 2140, 2149, 2388, 2522 |
| Bst4CI | ACNGT | 5 cut(s) | 568, 629, 1092, 1781, 1888 |
| Bst6I | CTCTTC | 6 cut(s) | 149, 772, 894, 1346, 2445, 2511 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1290, 2913 |
| BstBI | TTCGAA | 1 cut(s) | 2409 |
| BstC8I | GCNNGC | 6 cut(s) | 492, 576, 1005, 2135, 3060, 3402 |
| BstDSI | CCRYGG | 1 cut(s) | 1858 |
| BstEII | GGTNACC | 1 cut(s) | 481 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1454 |
| BstF5I | GGATG | 9 cut(s) | 436, 898, 1450, 1679, 1817, 1912, 2488, 2961, 3334 |
| BstFNI | CGCG | 1 cut(s) | 670 |
| BstHHI | GCGC | 2 cut(s) | 1988, 2599 |
| BstMCI | CGRYCG | 1 cut(s) | 1320 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 1290, 1994, 2073, 2462, 2913, 3059, 3275, 3338 |
| BstNI | CCWGG | 6 cut(s) | 1494, 1917, 2140, 2149, 2388, 2522 |
| BstNSI | RCATGY | 7 cut(s) | 494, 1791, 2137, 2979, 3062, 3282, 3404 |
| BstPI | GGTNACC | 1 cut(s) | 481 |
| BstSCI | CCNGG | 6 cut(s) | 1492, 1915, 2138, 2147, 2386, 2520 |
| BstSFI | CTRYAG | 4 cut(s) | 417, 2208, 2905, 3300 |
| BstSLI | GKGCMC | 2 cut(s) | 406, 2369 |
| BstUI | CGCG | 1 cut(s) | 670 |
| BstV1I | GCAGC | 4 cut(s) | 91, 94, 1051, 3037 |
| BstV2I | GAAGAC | 3 cut(s) | 1752, 2072, 2640 |
| BstX2I | RGATCY | 5 cut(s) | 421, 1265, 2041, 2809, 3033 |
| BstYI | RGATCY | 5 cut(s) | 421, 1265, 2041, 2809, 3033 |
| BstZ17I | GTATAC | 1 cut(s) | 1891 |
| BsuI | GTATCC | 1 cut(s) | 84 |
| BsuRI | GGCC | 4 cut(s) | 931, 1007, 2143, 2367 |
| BtgI | CCRYGG | 1 cut(s) | 1858 |
| BtgZI | GCGATG | 2 cut(s) | 2567, 3068 |
| BtsCI | GGATG | 9 cut(s) | 436, 898, 1450, 1679, 1817, 1912, 2488, 2961, 3334 |
| BtsI | GCAGTG | 4 cut(s) | 244, 1801, 2902, 3237 |
| BtsIMutI | CAGTG | 9 cut(s) | 244, 537, 938, 1609, 1786, 1801, 2428, 2902, 3237 |
| BtuMI | TCGCGA | 1 cut(s) | 670 |
| BveI | ACCTGC | 3 cut(s) | 121, 842, 3163 |
| Cac8I | GCNNGC | 6 cut(s) | 492, 576, 1005, 2135, 3060, 3402 |
| CaiI | CAGNNNCTG | 2 cut(s) | 811, 2654 |
| CciI | TCATGA | 1 cut(s) | 2875 |
| CfoI | GCGC | 2 cut(s) | 1988, 2599 |
| Cfr13I | GGNCC | 6 cut(s) | 362, 2152, 2365, 2366, 3019, 3208 |
| CseI | GACGC | 2 cut(s) | 1379, 3258 |
| Csp6I | GTAC | 7 cut(s) | 734, 746, 1116, 1397, 1497, 1785, 3147 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 870, 905 |
| CviQI | GTAC | 7 cut(s) | 734, 746, 1116, 1397, 1497, 1785, 3147 |
| EaeI | YGGCCR | 1 cut(s) | 1005 |
| Eam1104I | CTCTTC | 6 cut(s) | 149, 772, 894, 1346, 2445, 2511 |
| EarI | CTCTTC | 6 cut(s) | 149, 772, 894, 1346, 2445, 2511 |
| Eco130I | CCWWGG | 4 cut(s) | 230, 370, 1058, 1858 |
| Eco24I | GRGCYC | 2 cut(s) | 2369, 3361 |
| Eco47I | GGWCC | 4 cut(s) | 362, 2152, 3019, 3208 |
| Eco57I | CTGAAG | 4 cut(s) | 97, 1244, 2202, 2400 |
| Eco88I | CYCGRG | 1 cut(s) | 399 |
| Eco91I | GGTNACC | 1 cut(s) | 481 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1454 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2366, 3019 |
| EcoO65I | GGTNACC | 1 cut(s) | 481 |
| EcoRI | GAATTC | 3 cut(s) | 1343, 1539, 2794 |
| EcoRII | CCWGG | 6 cut(s) | 1492, 1915, 2138, 2147, 2386, 2520 |
| EcoT14I | CCWWGG | 4 cut(s) | 230, 370, 1058, 1858 |
| EcoT22I | ATGCAT | 2 cut(s) | 2380, 3060 |
| EcoT38I | GRGCYC | 2 cut(s) | 2369, 3361 |
| ErhI | CCWWGG | 4 cut(s) | 230, 370, 1058, 1858 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1175, 1207, 1239, 1271 |
| FaqI | GGGAC | 1 cut(s) | 741 |
| FauI | CCCGC | 2 cut(s) | 567, 2011 |
| FauNDI | CATATG | 1 cut(s) | 2380 |
| FbaI | TGATCA | 2 cut(s) | 952, 2605 |
| FblI | GTMKAC | 2 cut(s) | 1890, 2661 |
| Fnu4HI | GCNGC | 5 cut(s) | 105, 108, 1040, 1407, 3051 |
| FokI | GGATG | 9 cut(s) | 423, 905, 1457, 1666, 1824, 1899, 2495, 2948, 3341 |
| FriOI | GRGCYC | 2 cut(s) | 2369, 3361 |
| Fsp4HI | GCNGC | 5 cut(s) | 105, 108, 1040, 1407, 3051 |
| FspBI | CTAG | 9 cut(s) | 594, 639, 1529, 1619, 2025, 2073, 2256, 2807, 2859 |
| GlaI | GCGC | 2 cut(s) | 1987, 2598 |
| GluI | GCNGC | 5 cut(s) | 105, 108, 1040, 1407, 3051 |
| GsuI | CTGGAG | 7 cut(s) | 309, 513, 926, 1056, 1773, 2543, 2727 |
| HaeIII | GGCC | 4 cut(s) | 931, 1007, 2143, 2367 |
| HapII | CCGG | 1 cut(s) | 352 |
| HgaI | GACGC | 2 cut(s) | 1379, 3258 |
| HhaI | GCGC | 2 cut(s) | 1988, 2599 |
| Hin6I | GCGC | 2 cut(s) | 1986, 2597 |
| HinP1I | GCGC | 2 cut(s) | 1986, 2597 |
| HincII | GTYRAC | 2 cut(s) | 321, 610 |
| HindII | GTYRAC | 2 cut(s) | 321, 610 |
| HindIII | AAGCTT | 1 cut(s) | 1226 |
| HpaI | GTTAAC | 1 cut(s) | 321 |
| HpaII | CCGG | 1 cut(s) | 352 |
| Hpy166II | GTNNAC | 9 cut(s) | 321, 610, 833, 986, 1487, 1891, 2495, 2662, 2834 |
| Hpy8I | GTNNAC | 9 cut(s) | 321, 610, 833, 986, 1487, 1891, 2495, 2662, 2834 |
| Hpy99I | CGWCG | 1 cut(s) | 521 |
| HpyCH4III | ACNGT | 5 cut(s) | 568, 629, 1092, 1781, 1888 |
| HpyCH4IV | ACGT | 1 cut(s) | 3145 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 1290, 1994, 2073, 2462, 2913, 3059, 3275, 3338 |
| HpySE526I | ACGT | 1 cut(s) | 3145 |
| HspAI | GCGC | 2 cut(s) | 1986, 2597 |
| Kpn2I | TCCGGA | 1 cut(s) | 351 |
| Ksp22I | TGATCA | 2 cut(s) | 952, 2605 |
| KspAI | GTTAAC | 1 cut(s) | 321 |
| LguI | GCTCTTC | 2 cut(s) | 894, 2511 |
| Lsp1109I | GCAGC | 4 cut(s) | 91, 94, 1051, 3037 |
| LweI | GCATC | 6 cut(s) | 580, 1435, 1802, 3045, 3076, 3319 |
| MaeI | CTAG | 9 cut(s) | 594, 639, 1529, 1619, 2025, 2073, 2256, 2807, 2859 |
| MaeII | ACGT | 1 cut(s) | 3145 |
| MaeIII | GTNAC | 6 cut(s) | 481, 634, 679, 1775, 1882, 2426 |
| MfeI | CAATTG | 1 cut(s) | 3063 |
| MflI | RGATCY | 5 cut(s) | 421, 1265, 2041, 2809, 3033 |
| MhlI | GDGCHC | 6 cut(s) | 229, 406, 529, 950, 2369, 3361 |
| MlsI | TGGCCA | 1 cut(s) | 1007 |
| MluNI | TGGCCA | 1 cut(s) | 1007 |
| MlyI | GAGTC | 6 cut(s) | 380, 642, 802, 1631, 1742, 3077 |
| MmeI | TCCRAC | 2 cut(s) | 529, 680 |
| Mox20I | TGGCCA | 1 cut(s) | 1007 |
| Mph1103I | ATGCAT | 2 cut(s) | 2380, 3060 |
| MroI | TCCGGA | 1 cut(s) | 351 |
| MroXI | GAANNNNTTC | 4 cut(s) | 347, 764, 1091, 2067 |
| MscI | TGGCCA | 1 cut(s) | 1007 |
| MslI | CAYNNNNRTG | 3 cut(s) | 943, 2169, 2788 |
| Msp20I | TGGCCA | 1 cut(s) | 1007 |
| MspA1I | CMGCKG | 1 cut(s) | 1409 |
| MspI | CCGG | 1 cut(s) | 352 |
| MspR9I | CCNGG | 6 cut(s) | 1494, 1917, 2140, 2149, 2388, 2522 |
| MunI | CAATTG | 1 cut(s) | 3063 |
| Mva1269I | GAATGC | 3 cut(s) | 101, 2069, 3227 |
| MvaI | CCWGG | 6 cut(s) | 1494, 1917, 2140, 2149, 2388, 2522 |
| MvnI | CGCG | 1 cut(s) | 670 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 1290, 1994, 2073, 2462, 2913, 3059, 3275, 3338 |
| NcoI | CCATGG | 1 cut(s) | 1858 |
| NdeI | CATATG | 1 cut(s) | 2380 |
| NlaIV | GGNNCC | 6 cut(s) | 856, 2043, 2153, 2367, 2762, 3196 |
| NmeAIII | GCCGAG | 1 cut(s) | 1276 |
| NmuCI | GTSAC | 4 cut(s) | 634, 1775, 1882, 2426 |
| NruI | TCGCGA | 1 cut(s) | 670 |
| NsiI | ATGCAT | 2 cut(s) | 2380, 3060 |
| NspI | RCATGY | 7 cut(s) | 494, 1791, 2137, 2979, 3062, 3282, 3404 |
| NspV | TTCGAA | 1 cut(s) | 2409 |
| OliI | CACNNNNGTG | 1 cut(s) | 943 |
| PaeI | GCATGC | 4 cut(s) | 494, 2137, 3062, 3404 |
| PagI | TCATGA | 1 cut(s) | 2875 |
| PciI | ACATGT | 2 cut(s) | 1787, 2975 |
| PciSI | GCTCTTC | 2 cut(s) | 894, 2511 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3142 |
| PctI | GAATGC | 3 cut(s) | 101, 2069, 3227 |
| PdmI | GAANNNNTTC | 4 cut(s) | 347, 764, 1091, 2067 |
| PfoI | TCCNGGA | 1 cut(s) | 1915 |
| PkrI | GCNGC | 5 cut(s) | 106, 109, 1041, 1408, 3052 |
| PleI | GAGTC | 6 cut(s) | 380, 641, 802, 1630, 1742, 3076 |
| PpsI | GAGTC | 6 cut(s) | 380, 641, 802, 1630, 1742, 3076 |
| PpuMI | RGGWCCY | 1 cut(s) | 3019 |
| PscI | ACATGT | 2 cut(s) | 1787, 2975 |
| PshBI | ATTAAT | 2 cut(s) | 650, 1701 |
| Psp5II | RGGWCCY | 1 cut(s) | 3019 |
| Psp6I | CCWGG | 6 cut(s) | 1492, 1915, 2138, 2147, 2386, 2520 |
| PspEI | GGTNACC | 1 cut(s) | 481 |
| PspGI | CCWGG | 6 cut(s) | 1492, 1915, 2138, 2147, 2386, 2520 |
| PspN4I | GGNNCC | 6 cut(s) | 856, 2043, 2153, 2367, 2762, 3196 |
| PspOMI | GGGCCC | 1 cut(s) | 2365 |
| PspPI | GGNCC | 6 cut(s) | 362, 2152, 2365, 2366, 3019, 3208 |
| PspPPI | RGGWCCY | 1 cut(s) | 3019 |
| PstI | CTGCAG | 2 cut(s) | 2909, 3304 |
| PstNI | CAGNNNCTG | 2 cut(s) | 811, 2654 |
| PsuI | RGATCY | 5 cut(s) | 421, 1265, 2041, 2809, 3033 |
| RruI | TCGCGA | 1 cut(s) | 670 |
| RsaI | GTAC | 7 cut(s) | 735, 747, 1117, 1398, 1498, 1786, 3148 |
| RsaNI | GTAC | 7 cut(s) | 734, 746, 1116, 1397, 1497, 1785, 3147 |
| RseI | CAYNNNNRTG | 3 cut(s) | 943, 2169, 2788 |
| SapI | GCTCTTC | 2 cut(s) | 894, 2511 |
| SatI | GCNGC | 5 cut(s) | 105, 108, 1040, 1407, 3051 |
| Sau96I | GGNCC | 6 cut(s) | 362, 2152, 2365, 2366, 3019, 3208 |
| ScaI | AGTACT | 1 cut(s) | 1398 |
| SchI | GAGTC | 6 cut(s) | 380, 642, 802, 1631, 1742, 3077 |
| ScrFI | CCNGG | 6 cut(s) | 1494, 1917, 2140, 2149, 2388, 2522 |
| SduI | GDGCHC | 6 cut(s) | 229, 406, 529, 950, 2369, 3361 |
| SfaNI | GCATC | 6 cut(s) | 580, 1435, 1802, 3045, 3076, 3319 |
| SfcI | CTRYAG | 4 cut(s) | 417, 2208, 2905, 3300 |
| SfuI | TTCGAA | 1 cut(s) | 2409 |
| SinI | GGWCC | 4 cut(s) | 362, 2152, 3019, 3208 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 943, 2169, 2788 |
| SmlI | CTYRAG | 2 cut(s) | 47, 338 |
| SmoI | CTYRAG | 2 cut(s) | 47, 338 |
| SpeI | ACTAGT | 1 cut(s) | 638 |
| SphI | GCATGC | 4 cut(s) | 494, 2137, 3062, 3404 |
| SsiI | CCGC | 4 cut(s) | 574, 1407, 2018, 2290 |
| SspI | AATATT | 1 cut(s) | 1955 |
| SspMI | CTAG | 9 cut(s) | 594, 639, 1529, 1619, 2025, 2073, 2256, 2807, 2859 |
| StyD4I | CCNGG | 6 cut(s) | 1492, 1915, 2138, 2147, 2386, 2520 |
| StyI | CCWWGG | 4 cut(s) | 230, 370, 1058, 1858 |
| TaaI | ACNGT | 5 cut(s) | 568, 629, 1092, 1781, 1888 |
| TaiI | ACGT | 1 cut(s) | 3148 |
| TaqI | TCGA | 2 cut(s) | 1320, 2409 |
| TaqII | GACCGA | 2 cut(s) | 1306, 3225 |
| TatI | WGTACW | 2 cut(s) | 1115, 1396 |
| TauI | GCSGC | 1 cut(s) | 1409 |
| TscAI | CASTG | 9 cut(s) | 251, 537, 945, 1609, 1786, 1801, 2435, 2909, 3237 |
| TseFI | GTSAC | 4 cut(s) | 634, 1775, 1882, 2426 |
| TseI | GCWGC | 4 cut(s) | 104, 107, 1039, 3050 |
| Tsp45I | GTSAC | 4 cut(s) | 634, 1775, 1882, 2426 |
| TspRI | CASTG | 9 cut(s) | 251, 537, 945, 1609, 1786, 1801, 2435, 2909, 3237 |
| VpaK11BI | GGWCC | 4 cut(s) | 362, 2152, 3019, 3208 |
| VspI | ATTAAT | 2 cut(s) | 650, 1701 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1454 |
| XapI | RAATTY | 7 cut(s) | 380, 1021, 1206, 1343, 1539, 1825, 2794 |
| XbaI | TCTAGA | 1 cut(s) | 2255 |
| XceI | RCATGY | 7 cut(s) | 494, 1791, 2137, 2979, 3062, 3282, 3404 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 193, 1923 |
| XmiI | GTMKAC | 2 cut(s) | 1890, 2661 |
| XmnI | GAANNNNTTC | 4 cut(s) | 347, 764, 1091, 2067 |
| XspI | CTAG | 9 cut(s) | 594, 639, 1529, 1619, 2025, 2073, 2256, 2807, 2859 |
| ZrmI | AGTACT | 1 cut(s) | 1398 |
| Zsp2I | ATGCAT | 2 cut(s) | 2380, 3060 |