Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015553.1

Orthogroup ID

OG0007270

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1565

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015553.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 980 bp

atggaatgccatgctatggtttttggattgacgtacaagcaggttcggggatggtttgttgagaggaggaggagggagaagaggaaacgtacagctagtgaattgttgagtggacgaaatgggttgggggatgctgctacaagtgtgtcgagtcagaaaacaaaagctgcttcggctttgaagtgcaagaagaaaaagatgaaagcgagtattcagagattgcagaatccggactaccttcttaagaaagtgttccgcaaagacggtcctcccctcggggtggaatttgattctcttccttctcgagcactttggaagtctacagattcccaaaatgatcctcccacgtgcaaagagaaccaaatagcacctaaaaggggaacggttacaaagtgtgctgtaactagtcatgaggagtttaatagcagtgctccaaggaaaagacatggtgctggaaaagacttgatgactgtgagaaaacaaggtgctgggaaagacttaatgacggtgaaaaggcatggtggtgggaaagacttgatgaaaatgaaaaaacatggttgtgggaaggatttgatgacaatgaaaaaacctggtggtggtaaaggtttgatgacagtctggcgcgcaaccaatcctgatgctgatgctagagactttcttattgacatgggtttagctaatggtgaagtcacacatgtatcacggaaaccacaaactcggagcagaagattacaacaacaaaaatctgttcctaaacagggaaggttacaaagtaagttacaagaaaagaggaagcgttttgttaaaagaagagaggtggaatctaacaaaggctcaaaccagaagctgcctagcaaagaaaaatgtgaacttgctttggaaggaacaggttctgaagaacacttggataaaattgcaatgcttatggatgatgaagagctggagcttacagaattacaagcaagaccaatttcactggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT Homeobox WHIM1 WSD

Protein Analysis

327

Amino Acids

36.67

Weight (kDa)

10.14

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12750
fragaria_vesca	FvH4_6g36260 FvH4_6g36260 FvH4_6g36260
malus_domestica	MD09G1170800.v1.1 MD17G1156400.v1.1
prunus_persica	Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1
pyrus_communis	pycom09g08850 pycom17g14940
rosa_chinensis	RchiOBHm_Chr2g0148261
rosa_laevigata	RLG00000020330
rosa_multiflora	Rmu_sc0003937.1_g000002 Rmu_sc0015553.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098960
rosa_rugosa	Rorug02G0405100
rosa_samantha	Rh2AG463700 Rh2BG476800 Rh2CG450500 Rh2DG485500
rosa_wichuraiana	Rw2G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	320
AccII	CGCG	1 cut(s)	624
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	915
AcvI	CACGTG	1 cut(s)	348
AfaI	GTAC	2 cut(s)	35, 91
AfiI	CCNNNNNNNGG	6 cut(s)	16, 275, 280, 377, 596, 758
AflII	CTTAAG	1 cut(s)	242
AflIII	ACRYGT	1 cut(s)	694
AgsI	TTSAA	1 cut(s)	181
AhlI	ACTAGT	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	589
AluBI	AGCT	6 cut(s)	95, 167, 677, 847, 940, 946
AluI	AGCT	6 cut(s)	95, 167, 677, 847, 940, 946
Alw21I	GWGCWC	2 cut(s)	310, 433
Alw26I	GTCTC	1 cut(s)	645
AlwI	GGATC	1 cut(s)	332
AlwNI	CAGNNNCTG	2 cut(s)	847, 893
Ama87I	CYCGRG	2 cut(s)	275, 303
Aor13HI	TCCGGA	1 cut(s)	229
ApeKI	GCWGC	3 cut(s)	134, 167, 847
ApoI	RAATTY	1 cut(s)	284
Asp700I	GAANNNNTTC	2 cut(s)	251, 889
AspLEI	GCGC	2 cut(s)	624, 626
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	520, 695
AvaI	CYCGRG	2 cut(s)	275, 303
AvaII	GGWCC	1 cut(s)	266
BaeI	ACNNNNGTAYC	2 cut(s)	681, 714
BbrPI	CACGTG	1 cut(s)	348
Bbv12I	GWGCWC	2 cut(s)	310, 433
BbvI	GCAGC	3 cut(s)	121, 154, 834
BccI	CCATC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	591
BcoDI	GTCTC	1 cut(s)	645
BcuI	ACTAGT	1 cut(s)	404
BfaI	CTAG	4 cut(s)	96, 405, 648, 852
BfmI	CTRYAG	1 cut(s)	321
BfrI	CTTAAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	3 cut(s)	135, 168, 848
BlsI	GCNGC	3 cut(s)	136, 169, 849
Bme1390I	CCNGG	1 cut(s)	591
Bme18I	GGWCC	1 cut(s)	266
BmeT110I	CYCGRG	2 cut(s)	275, 303
BmgT120I	GGNCC	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	591
BmsI	GCATC	3 cut(s)	121, 628, 634
BpmI	CTGGAG	1 cut(s)	962
BsaAI	YACGTR	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	274, 434
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 275, 280, 377, 596, 758
Bse3DI	GCAATG	1 cut(s)	924
BseAI	TCCGGA	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	591
BseDI	CCNNGG	2 cut(s)	274, 434
BseGI	GGATG	3 cut(s)	56, 136, 934
BseLI	CCNNNNNNNGG	6 cut(s)	16, 275, 280, 377, 596, 758
BseMI	GCAATG	1 cut(s)	924
BsePI	GCGCGC	1 cut(s)	622
BseRI	GAGGAG	4 cut(s)	79, 82, 85, 428
BseXI	GCAGC	3 cut(s)	121, 154, 834
BseYI	CCCAGC	1 cut(s)	488
Bsh1236I	CGCG	1 cut(s)	624
BsiHKAI	GWGCWC	2 cut(s)	310, 433
BsiHKCI	CYCGRG	2 cut(s)	275, 303
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	6 cut(s)	16, 275, 280, 377, 596, 758
BsmAI	GTCTC	1 cut(s)	645
BsmI	GAATGC	1 cut(s)	11
BsoBI	CYCGRG	2 cut(s)	275, 303
Bsp1286I	GDGCHC	2 cut(s)	310, 433
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	1 cut(s)	256
BspEI	TCCGGA	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	624
BspHI	TCATGA	1 cut(s)	409
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	332
BspQI	GCTCTTC	1 cut(s)	930
BspTI	CTTAAG	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	924
BssECI	CCNNGG	2 cut(s)	274, 434
BssHII	GCGCGC	1 cut(s)	622
BssMI	GATC	1 cut(s)	337
BssT1I	CCWWGG	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	5 cut(s)	266, 385, 472, 508, 616
Bst6I	CTCTTC	4 cut(s)	74, 300, 805, 930
BstAFI	CTTAAG	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	624
BstF5I	GGATG	3 cut(s)	56, 136, 934
BstFNI	CGCG	1 cut(s)	624
BstHHI	GCGC	2 cut(s)	624, 626
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	1 cut(s)	645
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	1 cut(s)	591
BstNSI	RCATGY	1 cut(s)	698
BstSCI	CCNGG	1 cut(s)	589
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	624
BstV1I	GCAGC	3 cut(s)	121, 154, 834
BtsCI	GGATG	3 cut(s)	56, 136, 934
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	2 cut(s)	433, 974
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	624
CaiI	CAGNNNCTG	2 cut(s)	847, 893
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	2 cut(s)	624, 626
Cfr13I	GGNCC	1 cut(s)	266
CsiI	ACCWGGT	1 cut(s)	589
Csp6I	GTAC	2 cut(s)	34, 90
CviAII	CATG	7 cut(s)	11, 410, 446, 518, 554, 667, 695
CviJI	RGCY	8 cut(s)	95, 167, 176, 677, 834, 847, 940, 946
CviKI_1	RGCY	8 cut(s)	95, 167, 176, 677, 834, 847, 940, 946
CviQI	GTAC	2 cut(s)	34, 90
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	4 cut(s)	74, 300, 805, 930
EarI	CTCTTC	4 cut(s)	74, 300, 805, 930
Eco130I	CCWWGG	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	915
Eco72I	CACGTG	1 cut(s)	348
Eco88I	CYCGRG	2 cut(s)	275, 303
EcoRII	CCWGG	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	7 cut(s)	14, 413, 449, 521, 557, 670, 698
FaiI	YATR	9 cut(s)	12, 17, 411, 447, 519, 555, 668, 696, 926
FatI	CATG	7 cut(s)	10, 409, 445, 517, 553, 666, 694
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	3 cut(s)	135, 168, 848
FokI	GGATG	3 cut(s)	63, 143, 941
Fsp4HI	GCNGC	3 cut(s)	135, 168, 848
FspBI	CTAG	4 cut(s)	96, 405, 648, 852
GlaI	GCGC	2 cut(s)	623, 625
GluI	GCNGC	3 cut(s)	135, 168, 848
GsaI	CCCAGC	1 cut(s)	492
GsuI	CTGGAG	1 cut(s)	962
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	2 cut(s)	624, 626
Hin1II	CATG	7 cut(s)	14, 413, 449, 521, 557, 670, 698
Hin6I	GCGC	2 cut(s)	622, 624
HinP1I	GCGC	2 cut(s)	622, 624
HinfI	GANTC	5 cut(s)	151, 226, 290, 326, 821
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	2 cut(s)	520, 695
Hpy166II	GTNNAC	3 cut(s)	113, 321, 869
Hpy188I	TCNGA	4 cut(s)	156, 216, 720, 895
Hpy188III	TCNNGA	4 cut(s)	230, 303, 410, 635
Hpy8I	GTNNAC	3 cut(s)	113, 321, 869
HpyAV	CCTTC	5 cut(s)	248, 309, 559, 756, 875
HpyCH4III	ACNGT	5 cut(s)	266, 385, 472, 508, 616
HpyCH4IV	ACGT	3 cut(s)	32, 88, 347
HpyCH4V	TGCA	4 cut(s)	186, 223, 351, 917
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpySE526I	ACGT	3 cut(s)	32, 88, 347
Hsp92II	CATG	7 cut(s)	14, 413, 449, 521, 557, 670, 698
HspAI	GCGC	2 cut(s)	622, 624
Kpn2I	TCCGGA	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	337
LguI	GCTCTTC	1 cut(s)	930
LmnI	GCTCC	3 cut(s)	436, 720, 943
Lsp1109I	GCAGC	3 cut(s)	121, 154, 834
LweI	GCATC	3 cut(s)	121, 628, 634
MabI	ACCWGGT	1 cut(s)	589
MaeI	CTAG	4 cut(s)	96, 405, 648, 852
MaeII	ACGT	3 cut(s)	32, 88, 347
MaeIII	GTNAC	5 cut(s)	385, 400, 688, 765, 777
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	7 cut(s)	91, 202, 287, 738, 822, 908, 947
MhlI	GDGCHC	2 cut(s)	310, 433
MluCI	AATT	5 cut(s)	101, 284, 912, 953, 969
MlyI	GAGTC	1 cut(s)	160
MroI	TCCGGA	1 cut(s)	229
MroXI	GAANNNNTTC	2 cut(s)	251, 889
MseI	TTAA	4 cut(s)	243, 420, 500, 804
MslI	CAYNNNNRTG	2 cut(s)	522, 558
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	591
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	591
MvnI	CGCG	1 cut(s)	624
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	7 cut(s)	14, 413, 449, 521, 557, 670, 698
NmuCI	GTSAC	1 cut(s)	688
NspI	RCATGY	1 cut(s)	698
PaeR7I	CTCGAG	1 cut(s)	303
PagI	TCATGA	1 cut(s)	409
PauI	GCGCGC	1 cut(s)	622
PciI	ACATGT	1 cut(s)	694
PciSI	GCTCTTC	1 cut(s)	930
PctI	GAATGC	1 cut(s)	11
PdmI	GAANNNNTTC	2 cut(s)	251, 889
PfeI	GAWTC	4 cut(s)	226, 290, 326, 821
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	3 cut(s)	136, 169, 849
PleI	GAGTC	1 cut(s)	159
PmaCI	CACGTG	1 cut(s)	348
PmlI	CACGTG	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	159
Ppu21I	YACGTR	1 cut(s)	348
PscI	ACATGT	1 cut(s)	694
Psp6I	CCWGG	1 cut(s)	589
PspCI	CACGTG	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	589
PspPI	GGNCC	1 cut(s)	266
PstNI	CAGNNNCTG	2 cut(s)	847, 893
PteI	GCGCGC	1 cut(s)	622
RsaI	GTAC	2 cut(s)	35, 91
RsaNI	GTAC	2 cut(s)	34, 90
RseI	CAYNNNNRTG	2 cut(s)	522, 558
SapI	GCTCTTC	1 cut(s)	930
SaqAI	TTAA	4 cut(s)	243, 420, 500, 804
SatI	GCNGC	3 cut(s)	135, 168, 848
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	591
SduI	GDGCHC	2 cut(s)	310, 433
SexAI	ACCWGGT	1 cut(s)	589
SfaNI	GCATC	3 cut(s)	121, 628, 634
SfcI	CTRYAG	1 cut(s)	321
Sfr274I	CTCGAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	266
SlaI	CTCGAG	1 cut(s)	303
SmiMI	CAYNNNNRTG	2 cut(s)	522, 558
SmlI	CTYRAG	2 cut(s)	242, 303
SmoI	CTYRAG	2 cut(s)	242, 303
SpeI	ACTAGT	1 cut(s)	404
Sse9I	AATT	5 cut(s)	101, 284, 912, 953, 969
SsiI	CCGC	1 cut(s)	256
SspMI	CTAG	4 cut(s)	96, 405, 648, 852
StyD4I	CCNGG	1 cut(s)	589
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	5 cut(s)	266, 385, 472, 508, 616
TaiI	ACGT	3 cut(s)	35, 91, 350
TaqI	TCGA	2 cut(s)	149, 304
TasI	AATT	5 cut(s)	101, 284, 912, 953, 969
TfiI	GAWTC	4 cut(s)	226, 290, 326, 821
Tru1I	TTAA	4 cut(s)	243, 420, 500, 804
Tru9I	TTAA	4 cut(s)	243, 420, 500, 804
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	3 cut(s)	134, 167, 847
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	5 cut(s)	215, 554, 560, 596, 948
TspGWI	ACGGA	1 cut(s)	718
TspRI	CASTG	1 cut(s)	433
Van91I	CCANNNNNTGG	1 cut(s)	16
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	1 cut(s)	698
XhoI	CTCGAG	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	320
XmnI	GAANNNNTTC	2 cut(s)	251, 889
XspI	CTAG	4 cut(s)	96, 405, 648, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.