WSTF, HB1, Itc1p, MBD9 motif 1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G12750 |
| fragaria_vesca | FvH4_6g36260 FvH4_6g36260 FvH4_6g36260 |
| malus_domestica | MD09G1170800.v1.1 MD17G1156400.v1.1 |
| prunus_persica | Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 |
| pyrus_communis | pycom09g08850 pycom17g14940 |
| rosa_chinensis | RchiOBHm_Chr2g0148261 |
| rosa_laevigata | RLG00000020330 |
| rosa_multiflora | Rmu_sc0003937.1_g000002 Rmu_sc0015553.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00098960 |
| rosa_rugosa | Rorug02G0405100 |
| rosa_samantha | Rh2AG463700 Rh2BG476800 Rh2CG450500 Rh2DG485500 |
| rosa_wichuraiana | Rw2G037800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 118, 3274 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 103 |
| AccI | GTMKAC | 1 cut(s) | 407 |
| AccII | CGCG | 1 cut(s) | 711 |
| AccIII | TCCGGA | 1 cut(s) | 316 |
| AciI | CCGC | 5 cut(s) | 59, 343, 1373, 1564, 2400 |
| AclI | AACGTT | 1 cut(s) | 1719 |
| AclWI | GGATC | 5 cut(s) | 419, 1396, 2152, 2159, 2172 |
| AcsI | RAATTY | 7 cut(s) | 371, 1329, 1466, 1948, 2360, 2905, 2926 |
| AcuI | CTGAAG | 7 cut(s) | 1002, 1255, 1367, 1854, 2511, 2853, 3213 |
| AcvI | CACGTG | 1 cut(s) | 435 |
| AdeI | CACNNNGTG | 1 cut(s) | 2255 |
| AfaI | GTAC | 9 cut(s) | 122, 178, 1521, 1621, 1818, 2013, 2453, 2808, 3109 |
| AflII | CTTAAG | 1 cut(s) | 329 |
| AflIII | ACRYGT | 2 cut(s) | 781, 3086 |
| AhlI | ACTAGT | 1 cut(s) | 491 |
| AjnI | CCWGG | 3 cut(s) | 676, 2038, 2261 |
| AleI | CACNNNNGTG | 1 cut(s) | 1066 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2811, 2812, 2843, 2844 |
| Alw21I | GWGCWC | 2 cut(s) | 397, 520 |
| Alw26I | GTCTC | 3 cut(s) | 732, 2783, 3485 |
| AlwI | GGATC | 5 cut(s) | 419, 1396, 2152, 2159, 2172 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 934, 980 |
| Ama87I | CYCGRG | 3 cut(s) | 362, 390, 2497 |
| Aor13HI | TCCGGA | 1 cut(s) | 316 |
| AoxI | GGCC | 2 cut(s) | 2476, 2500 |
| ApaI | GGGCCC | 1 cut(s) | 2480 |
| ApeKI | GCWGC | 5 cut(s) | 221, 254, 934, 1529, 3161 |
| ApoI | RAATTY | 7 cut(s) | 371, 1329, 1466, 1948, 2360, 2905, 2926 |
| AseI | ATTAAT | 1 cut(s) | 1665 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 338, 976, 2190 |
| AspLEI | GCGC | 2 cut(s) | 711, 713 |
| AspS9I | GGNCC | 6 cut(s) | 353, 2275, 2403, 2476, 2477, 2500 |
| AsuC2I | CCSGG | 2 cut(s) | 2498, 2499 |
| AsuHPI | GGTGA | 7 cut(s) | 782, 1185, 1609, 2084, 2748, 3253, 3442 |
| AsuII | TTCGAA | 1 cut(s) | 2839 |
| AvaI | CYCGRG | 3 cut(s) | 362, 390, 2497 |
| AvaII | GGWCC | 3 cut(s) | 353, 2275, 2403 |
| BaeGI | GKGCMC | 2 cut(s) | 2262, 2480 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 768, 801 |
| BamHI | GGATCC | 1 cut(s) | 2164 |
| BanII | GRGCYC | 1 cut(s) | 2480 |
| BauI | CACGAG | 1 cut(s) | 1652 |
| BbrPI | CACGTG | 1 cut(s) | 435 |
| BbsI | GAAGAC | 5 cut(s) | 14, 1842, 1875, 2313, 2751 |
| Bbv12I | GWGCWC | 2 cut(s) | 397, 520 |
| BbvI | GCAGC | 5 cut(s) | 208, 241, 921, 1541, 3148 |
| BccI | CCATC | 6 cut(s) | 132, 2043, 2059, 2528, 2684, 3317 |
| BceAI | ACGGC | 3 cut(s) | 1232, 2657, 2694 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 1681, 1715, 2699, 2733, 2874, 2908, 3162, 3196 |
| BciT130I | CCWGG | 3 cut(s) | 678, 2040, 2263 |
| BciVI | GTATCC | 2 cut(s) | 81, 2773 |
| BcnI | CCSGG | 2 cut(s) | 2498, 2499 |
| BcoDI | GTCTC | 3 cut(s) | 732, 2783, 3485 |
| BcuI | ACTAGT | 1 cut(s) | 491 |
| BfaI | CTAG | 8 cut(s) | 183, 492, 735, 939, 1143, 2123, 2918, 2970 |
| BfmI | CTRYAG | 5 cut(s) | 408, 2334, 2823, 3016, 3411 |
| BfrI | CTTAAG | 1 cut(s) | 329 |
| BfuAI | ACCTGC | 2 cut(s) | 118, 3274 |
| BfuI | GTATCC | 2 cut(s) | 81, 2773 |
| BglII | AGATCT | 1 cut(s) | 1478 |
| BisI | GCNGC | 5 cut(s) | 222, 255, 935, 1530, 3162 |
| BlsI | GCNGC | 5 cut(s) | 223, 256, 936, 1531, 3163 |
| BmcAI | AGTACT | 2 cut(s) | 1521, 3109 |
| Bme1390I | CCNGG | 5 cut(s) | 678, 2040, 2263, 2498, 2499 |
| Bme18I | GGWCC | 3 cut(s) | 353, 2275, 2403 |
| BmeT110I | CYCGRG | 3 cut(s) | 362, 390, 2497 |
| BmgT120I | GGNCC | 6 cut(s) | 353, 2275, 2403, 2476, 2477, 2500 |
| BmiI | GGNNCC | 5 cut(s) | 2166, 2276, 2404, 2478, 3307 |
| BmrFI | CCNGG | 5 cut(s) | 678, 2040, 2263, 2498, 2499 |
| BmrI | ACTGGG | 3 cut(s) | 1073, 1447, 2551 |
| BmsI | GCATC | 6 cut(s) | 208, 715, 721, 3187, 3398, 3520 |
| BmuI | ACTGGG | 3 cut(s) | 1073, 1447, 2551 |
| BpiI | GAAGAC | 5 cut(s) | 14, 1842, 1875, 2313, 2751 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1367, 1399, 2363, 2395 |
| BpmI | CTGGAG | 3 cut(s) | 1049, 1763, 2238 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1574, 3120 |
| Bpu14I | TTCGAA | 1 cut(s) | 2839 |
| BpuEI | CTTGAG | 2 cut(s) | 1275, 1423 |
| BpuMI | CCSGG | 2 cut(s) | 2498, 2499 |
| BsaAI | YACGTR | 1 cut(s) | 435 |
| BsaI | GGTCTC | 1 cut(s) | 3485 |
| BsaJI | CCNNGG | 5 cut(s) | 361, 521, 1181, 2261, 2497 |
| BsaWI | WCCGGW | 1 cut(s) | 316 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 53, 83 |
| Bse1I | ACTGG | 9 cut(s) | 1068, 1131, 1442, 1527, 2468, 2546, 2759, 3326, 3495 |
| Bse3DI | GCAATG | 4 cut(s) | 1011, 1697, 2491, 2670 |
| BseAI | TCCGGA | 1 cut(s) | 316 |
| BseBI | CCWGG | 3 cut(s) | 678, 2040, 2263 |
| BseDI | CCNNGG | 5 cut(s) | 361, 521, 1181, 2261, 2497 |
| BseGI | GGATG | 9 cut(s) | 143, 223, 1021, 1285, 1802, 2035, 2599, 3445, 3511 |
| BseMI | GCAATG | 4 cut(s) | 1011, 1697, 2491, 2670 |
| BseMII | CTCAG | 6 cut(s) | 1909, 2010, 2715, 2778, 3111, 3468 |
| BseNI | ACTGG | 9 cut(s) | 1068, 1131, 1442, 1527, 2468, 2546, 2759, 3326, 3495 |
| BsePI | GCGCGC | 1 cut(s) | 709 |
| BseRI | GAGGAG | 5 cut(s) | 166, 169, 172, 515, 3444 |
| BseSI | GKGCMC | 2 cut(s) | 2262, 2480 |
| BseXI | GCAGC | 5 cut(s) | 208, 241, 921, 1541, 3148 |
| BseYI | CCCAGC | 1 cut(s) | 575 |
| BsgI | GTGCAG | 1 cut(s) | 1899 |
| Bsh1236I | CGCG | 1 cut(s) | 711 |
| BshFI | GGCC | 2 cut(s) | 2478, 2502 |
| BsiHKAI | GWGCWC | 2 cut(s) | 397, 520 |
| BsiHKCI | CYCGRG | 3 cut(s) | 362, 390, 2497 |
| BsiSI | CCGG | 3 cut(s) | 317, 1561, 2498 |
| BsmAI | GTCTC | 3 cut(s) | 732, 2783, 3485 |
| BsmI | GAATGC | 4 cut(s) | 98, 1612, 2190, 2192 |
| BsnI | GGCC | 2 cut(s) | 2478, 2502 |
| Bso31I | GGTCTC | 1 cut(s) | 3485 |
| BsoBI | CYCGRG | 3 cut(s) | 362, 390, 2497 |
| Bsp119I | TTCGAA | 1 cut(s) | 2839 |
| Bsp120I | GGGCCC | 1 cut(s) | 2476 |
| Bsp1286I | GDGCHC | 4 cut(s) | 397, 520, 2262, 2480 |
| Bsp13I | TCCGGA | 1 cut(s) | 316 |
| BspACI | CCGC | 5 cut(s) | 59, 343, 1373, 1564, 2400 |
| BspANI | GGCC | 2 cut(s) | 2478, 2502 |
| BspCNI | CTCAG | 6 cut(s) | 1908, 2011, 2716, 2779, 3112, 3469 |
| BspEI | TCCGGA | 1 cut(s) | 316 |
| BspFNI | CGCG | 1 cut(s) | 711 |
| BspHI | TCATGA | 3 cut(s) | 496, 1300, 2986 |
| BspLI | GGNNCC | 5 cut(s) | 2166, 2276, 2404, 2478, 3307 |
| BspMAI | CTGCAG | 2 cut(s) | 3020, 3415 |
| BspMI | ACCTGC | 2 cut(s) | 118, 3274 |
| BspPI | GGATC | 5 cut(s) | 419, 1396, 2152, 2159, 2172 |
| BspQI | GCTCTTC | 3 cut(s) | 1017, 1347, 2622 |
| BspT104I | TTCGAA | 1 cut(s) | 2839 |
| BspTI | CTTAAG | 1 cut(s) | 329 |
| BspTNI | GGTCTC | 1 cut(s) | 3485 |
| BsrDI | GCAATG | 4 cut(s) | 1011, 1697, 2491, 2670 |
| BsrI | ACTGG | 9 cut(s) | 1068, 1131, 1442, 1527, 2468, 2546, 2759, 3326, 3495 |
| BssECI | CCNNGG | 5 cut(s) | 361, 521, 1181, 2261, 2497 |
| BssHII | GCGCGC | 1 cut(s) | 709 |
| BssSI | CACGAG | 1 cut(s) | 1652 |
| BssT1I | CCWWGG | 2 cut(s) | 521, 1181 |
| Bst2BI | CACGAG | 1 cut(s) | 1652 |
| Bst2UI | CCWGG | 3 cut(s) | 678, 2040, 2263 |
| Bst6I | CTCTTC | 8 cut(s) | 161, 387, 892, 1017, 1347, 2364, 2556, 2622 |
| BstAFI | CTTAAG | 1 cut(s) | 329 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1413, 3024 |
| BstBAI | YACGTR | 1 cut(s) | 435 |
| BstBI | TTCGAA | 1 cut(s) | 2839 |
| BstC8I | GCNNGC | 2 cut(s) | 711, 3359 |
| BstDEI | CTNAG | 8 cut(s) | 1574, 1895, 2019, 2724, 2787, 3120, 3251, 3477 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1577 |
| BstF5I | GGATG | 9 cut(s) | 143, 223, 1021, 1285, 1802, 2035, 2599, 3445, 3511 |
| BstFNI | CGCG | 1 cut(s) | 711 |
| BstHHI | GCGC | 2 cut(s) | 711, 713 |
| BstMAI | GTCTC | 3 cut(s) | 732, 2783, 3485 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 260, 1413, 2573, 2707, 3024, 3170, 3386 |
| BstNI | CCWGG | 3 cut(s) | 678, 2040, 2263 |
| BstNSI | RCATGY | 2 cut(s) | 785, 3090 |
| BstSCI | CCNGG | 5 cut(s) | 676, 2038, 2261, 2496, 2497 |
| BstSFI | CTRYAG | 5 cut(s) | 408, 2334, 2823, 3016, 3411 |
| BstSLI | GKGCMC | 2 cut(s) | 2262, 2480 |
| BstUI | CGCG | 1 cut(s) | 711 |
| BstV1I | GCAGC | 5 cut(s) | 208, 241, 921, 1541, 3148 |
| BstV2I | GAAGAC | 5 cut(s) | 14, 1842, 1875, 2313, 2751 |
| BstX2I | RGATCY | 4 cut(s) | 1388, 1478, 2144, 2164 |
| BstYI | RGATCY | 4 cut(s) | 1388, 1478, 2144, 2164 |
| BsuI | GTATCC | 2 cut(s) | 81, 2773 |
| BsuRI | GGCC | 2 cut(s) | 2478, 2502 |
| BtsCI | GGATG | 9 cut(s) | 143, 223, 1021, 1285, 1802, 2035, 2599, 3445, 3511 |
| BtsI | GCAGTG | 3 cut(s) | 520, 1924, 3013 |
| BveI | ACCTGC | 2 cut(s) | 118, 3274 |
| Cac8I | GCNNGC | 2 cut(s) | 711, 3359 |
| CaiI | CAGNNNCTG | 2 cut(s) | 934, 980 |
| CciI | TCATGA | 3 cut(s) | 496, 1300, 2986 |
| CfoI | GCGC | 2 cut(s) | 711, 713 |
| Cfr13I | GGNCC | 6 cut(s) | 353, 2275, 2403, 2476, 2477, 2500 |
| Cfr9I | CCCGGG | 1 cut(s) | 2497 |
| CseI | GACGC | 2 cut(s) | 1502, 2716 |
| CsiI | ACCWGGT | 1 cut(s) | 676 |
| Csp6I | GTAC | 9 cut(s) | 121, 177, 1520, 1620, 1817, 2012, 2452, 2807, 3108 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3346, 3381 |
| CviQI | GTAC | 9 cut(s) | 121, 177, 1520, 1620, 1817, 2012, 2452, 2807, 3108 |
| DdeI | CTNAG | 8 cut(s) | 1574, 1895, 2019, 2724, 2787, 3120, 3251, 3477 |
| DraI | TTTAAA | 2 cut(s) | 1642, 2814 |
| DraIII | CACNNNGTG | 1 cut(s) | 2255 |
| Eam1104I | CTCTTC | 8 cut(s) | 161, 387, 892, 1017, 1347, 2364, 2556, 2622 |
| EarI | CTCTTC | 8 cut(s) | 161, 387, 892, 1017, 1347, 2364, 2556, 2622 |
| Eco130I | CCWWGG | 2 cut(s) | 521, 1181 |
| Eco24I | GRGCYC | 1 cut(s) | 2480 |
| Eco31I | GGTCTC | 1 cut(s) | 3485 |
| Eco32I | GATATC | 1 cut(s) | 3373 |
| Eco47I | GGWCC | 3 cut(s) | 353, 2275, 2403 |
| Eco57I | CTGAAG | 7 cut(s) | 1002, 1255, 1367, 1854, 2511, 2853, 3213 |
| Eco72I | CACGTG | 1 cut(s) | 435 |
| Eco88I | CYCGRG | 3 cut(s) | 362, 390, 2497 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1577 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2477 |
| EcoRI | GAATTC | 2 cut(s) | 1466, 2905 |
| EcoRII | CCWGG | 3 cut(s) | 676, 2038, 2261 |
| EcoRV | GATATC | 1 cut(s) | 3373 |
| EcoT14I | CCWWGG | 2 cut(s) | 521, 1181 |
| EcoT22I | ATGCAT | 2 cut(s) | 2192, 2491 |
| EcoT38I | GRGCYC | 1 cut(s) | 2480 |
| ErhI | CCWWGG | 2 cut(s) | 521, 1181 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1362, 1394 |
| FauI | CCCGC | 2 cut(s) | 1557, 2393 |
| FauNDI | CATATG | 2 cut(s) | 1243, 2491 |
| FblI | GTMKAC | 1 cut(s) | 407 |
| Fnu4HI | GCNGC | 5 cut(s) | 222, 255, 935, 1530, 3162 |
| FokI | GGATG | 9 cut(s) | 150, 230, 1028, 1292, 1789, 2022, 2606, 3452, 3498 |
| FriOI | GRGCYC | 1 cut(s) | 2480 |
| Fsp4HI | GCNGC | 5 cut(s) | 222, 255, 935, 1530, 3162 |
| FspBI | CTAG | 8 cut(s) | 183, 492, 735, 939, 1143, 2123, 2918, 2970 |
| GlaI | GCGC | 2 cut(s) | 710, 712 |
| GluI | GCNGC | 5 cut(s) | 222, 255, 935, 1530, 3162 |
| GsaI | CCCAGC | 1 cut(s) | 579 |
| GsuI | CTGGAG | 3 cut(s) | 1049, 1763, 2238 |
| HaeIII | GGCC | 2 cut(s) | 2478, 2502 |
| HapII | CCGG | 3 cut(s) | 317, 1561, 2498 |
| HgaI | GACGC | 2 cut(s) | 1502, 2716 |
| HhaI | GCGC | 2 cut(s) | 711, 713 |
| Hin6I | GCGC | 2 cut(s) | 709, 711 |
| HinP1I | GCGC | 2 cut(s) | 709, 711 |
| HindIII | AAGCTT | 3 cut(s) | 49, 1349, 3359 |
| HpaII | CCGG | 3 cut(s) | 317, 1561, 2498 |
| HphI | GGTGA | 7 cut(s) | 782, 1185, 1609, 2084, 2748, 3253, 3442 |
| Hpy166II | GTNNAC | 9 cut(s) | 200, 408, 956, 1109, 1817, 2014, 2302, 2606, 2945 |
| Hpy8I | GTNNAC | 9 cut(s) | 200, 408, 956, 1109, 1817, 2014, 2302, 2606, 2945 |
| HpyCH4IV | ACGT | 6 cut(s) | 119, 175, 434, 1365, 1719, 1819 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 260, 1413, 2573, 2707, 3024, 3170, 3386 |
| HpyF3I | CTNAG | 8 cut(s) | 1574, 1895, 2019, 2724, 2787, 3120, 3251, 3477 |
| HpySE526I | ACGT | 6 cut(s) | 119, 175, 434, 1365, 1719, 1819 |
| HspAI | GCGC | 2 cut(s) | 709, 711 |
| Kpn2I | TCCGGA | 1 cut(s) | 316 |
| LguI | GCTCTTC | 3 cut(s) | 1017, 1347, 2622 |
| LmnI | GCTCC | 7 cut(s) | 523, 807, 1030, 1375, 2219, 3305, 3457 |
| Lsp1109I | GCAGC | 5 cut(s) | 208, 241, 921, 1541, 3148 |
| LweI | GCATC | 6 cut(s) | 208, 715, 721, 3187, 3398, 3520 |
| MabI | ACCWGGT | 1 cut(s) | 676 |
| MaeI | CTAG | 8 cut(s) | 183, 492, 735, 939, 1143, 2123, 2918, 2970 |
| MaeII | ACGT | 6 cut(s) | 119, 175, 434, 1365, 1719, 1819 |
| MaeIII | GTNAC | 8 cut(s) | 472, 487, 775, 852, 864, 1317, 1898, 2537 |
| MfeI | CAATTG | 1 cut(s) | 3174 |
| MflI | RGATCY | 4 cut(s) | 1388, 1478, 2144, 2164 |
| MhlI | GDGCHC | 4 cut(s) | 397, 520, 2262, 2480 |
| MlyI | GAGTC | 6 cut(s) | 247, 1453, 1754, 1865, 1963, 3188 |
| MmeI | TCCRAC | 3 cut(s) | 1707, 2430, 3283 |
| Mph1103I | ATGCAT | 2 cut(s) | 2192, 2491 |
| MroI | TCCGGA | 1 cut(s) | 316 |
| MroXI | GAANNNNTTC | 3 cut(s) | 338, 976, 2190 |
| MslI | CAYNNNNRTG | 4 cut(s) | 609, 645, 1066, 2653 |
| MspA1I | CMGCKG | 1 cut(s) | 1532 |
| MspCI | CTTAAG | 1 cut(s) | 329 |
| MspI | CCGG | 3 cut(s) | 317, 1561, 2498 |
| MspR9I | CCNGG | 5 cut(s) | 678, 2040, 2263, 2498, 2499 |
| MunI | CAATTG | 1 cut(s) | 3174 |
| Mva1269I | GAATGC | 4 cut(s) | 98, 1612, 2190, 2192 |
| MvaI | CCWGG | 3 cut(s) | 678, 2040, 2263 |
| MvnI | CGCG | 1 cut(s) | 711 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 260, 1413, 2573, 2707, 3024, 3170, 3386 |
| NciI | CCSGG | 2 cut(s) | 2498, 2499 |
| NdeI | CATATG | 2 cut(s) | 1243, 2491 |
| NlaIV | GGNNCC | 5 cut(s) | 2166, 2276, 2404, 2478, 3307 |
| NmuCI | GTSAC | 3 cut(s) | 775, 1898, 2537 |
| NsiI | ATGCAT | 2 cut(s) | 2192, 2491 |
| NspI | RCATGY | 2 cut(s) | 785, 3090 |
| NspV | TTCGAA | 1 cut(s) | 2839 |
| OliI | CACNNNNGTG | 1 cut(s) | 1066 |
| PaeR7I | CTCGAG | 1 cut(s) | 390 |
| PagI | TCATGA | 3 cut(s) | 496, 1300, 2986 |
| PauI | GCGCGC | 1 cut(s) | 709 |
| PciI | ACATGT | 2 cut(s) | 781, 3086 |
| PciSI | GCTCTTC | 3 cut(s) | 1017, 1347, 2622 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 42, 3253 |
| PctI | GAATGC | 4 cut(s) | 98, 1612, 2190, 2192 |
| PdmI | GAANNNNTTC | 3 cut(s) | 338, 976, 2190 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 103 |
| PfoI | TCCNGGA | 1 cut(s) | 2038 |
| PkrI | GCNGC | 5 cut(s) | 223, 256, 936, 1531, 3163 |
| PleI | GAGTC | 6 cut(s) | 246, 1453, 1753, 1865, 1963, 3187 |
| PmaCI | CACGTG | 1 cut(s) | 435 |
| PmlI | CACGTG | 1 cut(s) | 435 |
| PpsI | GAGTC | 6 cut(s) | 246, 1453, 1753, 1865, 1963, 3187 |
| Ppu21I | YACGTR | 1 cut(s) | 435 |
| PscI | ACATGT | 2 cut(s) | 781, 3086 |
| PshBI | ATTAAT | 1 cut(s) | 1665 |
| Psp1406I | AACGTT | 1 cut(s) | 1719 |
| Psp6I | CCWGG | 3 cut(s) | 676, 2038, 2261 |
| PspCI | CACGTG | 1 cut(s) | 435 |
| PspFI | CCCAGC | 1 cut(s) | 575 |
| PspGI | CCWGG | 3 cut(s) | 676, 2038, 2261 |
| PspN4I | GGNNCC | 5 cut(s) | 2166, 2276, 2404, 2478, 3307 |
| PspOMI | GGGCCC | 1 cut(s) | 2476 |
| PspPI | GGNCC | 6 cut(s) | 353, 2275, 2403, 2476, 2477, 2500 |
| PstI | CTGCAG | 2 cut(s) | 3020, 3415 |
| PstNI | CAGNNNCTG | 2 cut(s) | 934, 980 |
| PsuI | RGATCY | 4 cut(s) | 1388, 1478, 2144, 2164 |
| PteI | GCGCGC | 1 cut(s) | 709 |
| PvuII | CAGCTG | 1 cut(s) | 1532 |
| RsaI | GTAC | 9 cut(s) | 122, 178, 1521, 1621, 1818, 2013, 2453, 2808, 3109 |
| RsaNI | GTAC | 9 cut(s) | 121, 177, 1520, 1620, 1817, 2012, 2452, 2807, 3108 |
| RseI | CAYNNNNRTG | 4 cut(s) | 609, 645, 1066, 2653 |
| SapI | GCTCTTC | 3 cut(s) | 1017, 1347, 2622 |
| SatI | GCNGC | 5 cut(s) | 222, 255, 935, 1530, 3162 |
| Sau96I | GGNCC | 6 cut(s) | 353, 2275, 2403, 2476, 2477, 2500 |
| ScaI | AGTACT | 2 cut(s) | 1521, 3109 |
| SchI | GAGTC | 6 cut(s) | 247, 1453, 1754, 1865, 1963, 3188 |
| ScrFI | CCNGG | 5 cut(s) | 678, 2040, 2263, 2498, 2499 |
| SduI | GDGCHC | 4 cut(s) | 397, 520, 2262, 2480 |
| SexAI | ACCWGGT | 1 cut(s) | 676 |
| SfaNI | GCATC | 6 cut(s) | 208, 715, 721, 3187, 3398, 3520 |
| SfcI | CTRYAG | 5 cut(s) | 408, 2334, 2823, 3016, 3411 |
| Sfr274I | CTCGAG | 1 cut(s) | 390 |
| SfuI | TTCGAA | 1 cut(s) | 2839 |
| SinI | GGWCC | 3 cut(s) | 353, 2275, 2403 |
| SlaI | CTCGAG | 1 cut(s) | 390 |
| SmaI | CCCGGG | 1 cut(s) | 2499 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 609, 645, 1066, 2653 |
| SmlI | CTYRAG | 4 cut(s) | 329, 390, 1290, 1402 |
| SmoI | CTYRAG | 4 cut(s) | 329, 390, 1290, 1402 |
| SpeI | ACTAGT | 1 cut(s) | 491 |
| SsiI | CCGC | 5 cut(s) | 59, 343, 1373, 1564, 2400 |
| SspI | AATATT | 1 cut(s) | 2078 |
| SspMI | CTAG | 8 cut(s) | 183, 492, 735, 939, 1143, 2123, 2918, 2970 |
| StyD4I | CCNGG | 5 cut(s) | 676, 2038, 2261, 2496, 2497 |
| StyI | CCWWGG | 2 cut(s) | 521, 1181 |
| TaiI | ACGT | 6 cut(s) | 122, 178, 437, 1368, 1722, 1822 |
| TaqI | TCGA | 9 cut(s) | 25, 36, 45, 79, 391, 1457, 2111, 2839, 2958 |
| TatI | WGTACW | 3 cut(s) | 1519, 2011, 3107 |
| TseFI | GTSAC | 3 cut(s) | 775, 1898, 2537 |
| TseI | GCWGC | 5 cut(s) | 221, 254, 934, 1529, 3161 |
| Tsp45I | GTSAC | 3 cut(s) | 775, 1898, 2537 |
| TspGWI | ACGGA | 2 cut(s) | 805, 2920 |
| TspMI | CCCGGG | 1 cut(s) | 2497 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 103 |
| Vha464I | CTTAAG | 1 cut(s) | 329 |
| VpaK11BI | GGWCC | 3 cut(s) | 353, 2275, 2403 |
| VspI | ATTAAT | 1 cut(s) | 1665 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1577 |
| XapI | RAATTY | 7 cut(s) | 371, 1329, 1466, 1948, 2360, 2905, 2926 |
| XceI | RCATGY | 2 cut(s) | 785, 3090 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2046 |
| XhoI | CTCGAG | 1 cut(s) | 390 |
| XmaI | CCCGGG | 1 cut(s) | 2497 |
| XmiI | GTMKAC | 1 cut(s) | 407 |
| XmnI | GAANNNNTTC | 3 cut(s) | 338, 976, 2190 |
| XspI | CTAG | 8 cut(s) | 183, 492, 735, 939, 1143, 2123, 2918, 2970 |
| ZrmI | AGTACT | 2 cut(s) | 1521, 3109 |
| Zsp2I | ATGCAT | 2 cut(s) | 2192, 2491 |