WSTF, HB1, Itc1p, MBD9 motif 1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G12750 |
| fragaria_vesca | FvH4_6g36260 FvH4_6g36260 FvH4_6g36260 |
| malus_domestica | MD09G1170800.v1.1 MD17G1156400.v1.1 |
| prunus_persica | Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 Prupe.3G029400_v2.0.a1 |
| pyrus_communis | pycom09g08850 pycom17g14940 |
| rosa_chinensis | RchiOBHm_Chr2g0148261 |
| rosa_laevigata | RLG00000020330 |
| rosa_multiflora | Rmu_sc0003937.1_g000002 Rmu_sc0015553.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00098960 |
| rosa_rugosa | Rorug02G0405100 |
| rosa_samantha | Rh2AG463700 Rh2BG476800 Rh2CG450500 Rh2DG485500 |
| rosa_wichuraiana | Rw2G037800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 118, 3196 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 103 |
| AccI | GTMKAC | 1 cut(s) | 407 |
| AccII | CGCG | 1 cut(s) | 654 |
| AccIII | TCCGGA | 1 cut(s) | 316 |
| AciI | CCGC | 5 cut(s) | 59, 343, 1295, 1486, 2322 |
| AclI | AACGTT | 1 cut(s) | 1641 |
| AclWI | GGATC | 4 cut(s) | 1318, 2074, 2081, 2094 |
| AcsI | RAATTY | 8 cut(s) | 371, 1251, 1388, 1870, 2282, 2827, 2848, 3435 |
| AcuI | CTGAAG | 8 cut(s) | 945, 1177, 1289, 1776, 2433, 2775, 3135, 3435 |
| AdeI | CACNNNGTG | 1 cut(s) | 2177 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 103, 367, 626, 788, 1419, 1501, 2431, 2738, 3012 |
| AflII | CTTAAG | 1 cut(s) | 329 |
| AflIII | ACRYGT | 2 cut(s) | 724, 3008 |
| AjnI | CCWGG | 3 cut(s) | 619, 1960, 2183 |
| AleI | CACNNNNGTG | 1 cut(s) | 1003 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2733, 2734, 2765, 2766 |
| Alw21I | GWGCWC | 2 cut(s) | 397, 463 |
| Alw26I | GTCTC | 3 cut(s) | 675, 2705, 3407 |
| AlwI | GGATC | 4 cut(s) | 1318, 2074, 2081, 2094 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 877, 923 |
| Ama87I | CYCGRG | 2 cut(s) | 390, 2419 |
| Aor13HI | TCCGGA | 1 cut(s) | 316 |
| AoxI | GGCC | 3 cut(s) | 352, 2398, 2422 |
| ApaI | GGGCCC | 1 cut(s) | 2402 |
| ApeKI | GCWGC | 5 cut(s) | 221, 254, 877, 1451, 3083 |
| ApoI | RAATTY | 8 cut(s) | 371, 1251, 1388, 1870, 2282, 2827, 2848, 3435 |
| AseI | ATTAAT | 1 cut(s) | 1587 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 338, 919, 2112 |
| AspLEI | GCGC | 2 cut(s) | 654, 656 |
| AspS9I | GGNCC | 6 cut(s) | 353, 2197, 2325, 2398, 2399, 2422 |
| AsuC2I | CCSGG | 2 cut(s) | 2420, 2421 |
| AsuHPI | GGTGA | 8 cut(s) | 550, 725, 1107, 1531, 2006, 2670, 3175, 3364 |
| AsuII | TTCGAA | 1 cut(s) | 2761 |
| AvaI | CYCGRG | 2 cut(s) | 390, 2419 |
| AvaII | GGWCC | 2 cut(s) | 2197, 2325 |
| BaeGI | GKGCMC | 2 cut(s) | 2184, 2402 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 711, 744 |
| BamHI | GGATCC | 1 cut(s) | 2086 |
| BanII | GRGCYC | 1 cut(s) | 2402 |
| BauI | CACGAG | 1 cut(s) | 1574 |
| BbsI | GAAGAC | 5 cut(s) | 14, 1764, 1797, 2235, 2673 |
| Bbv12I | GWGCWC | 2 cut(s) | 397, 463 |
| BbvI | GCAGC | 5 cut(s) | 208, 241, 864, 1463, 3070 |
| BccI | CCATC | 6 cut(s) | 132, 1965, 1981, 2450, 2606, 3239 |
| BceAI | ACGGC | 4 cut(s) | 367, 1154, 2579, 2616 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 1603, 1637, 2621, 2655, 2796, 2830, 3084, 3118 |
| BciT130I | CCWGG | 3 cut(s) | 621, 1962, 2185 |
| BciVI | GTATCC | 2 cut(s) | 81, 2695 |
| BcnI | CCSGG | 2 cut(s) | 2420, 2421 |
| BcoDI | GTCTC | 3 cut(s) | 675, 2705, 3407 |
| BfaI | CTAG | 8 cut(s) | 183, 678, 882, 1065, 2045, 2840, 2892, 3269 |
| BfmI | CTRYAG | 5 cut(s) | 408, 2256, 2745, 2938, 3333 |
| BfrI | CTTAAG | 1 cut(s) | 329 |
| BfuAI | ACCTGC | 2 cut(s) | 118, 3196 |
| BfuI | GTATCC | 2 cut(s) | 81, 2695 |
| BglII | AGATCT | 2 cut(s) | 1180, 1400 |
| BisI | GCNGC | 5 cut(s) | 222, 255, 878, 1452, 3084 |
| BlsI | GCNGC | 5 cut(s) | 223, 256, 879, 1453, 3085 |
| BmcAI | AGTACT | 2 cut(s) | 1443, 3031 |
| Bme1390I | CCNGG | 5 cut(s) | 621, 1962, 2185, 2420, 2421 |
| Bme18I | GGWCC | 2 cut(s) | 2197, 2325 |
| BmeT110I | CYCGRG | 2 cut(s) | 390, 2419 |
| BmgT120I | GGNCC | 6 cut(s) | 353, 2197, 2325, 2398, 2399, 2422 |
| BmiI | GGNNCC | 5 cut(s) | 2088, 2198, 2326, 2400, 3229 |
| BmrFI | CCNGG | 5 cut(s) | 621, 1962, 2185, 2420, 2421 |
| BmrI | ACTGGG | 3 cut(s) | 1010, 1369, 2473 |
| BmsI | GCATC | 5 cut(s) | 208, 658, 664, 3109, 3320 |
| BmuI | ACTGGG | 3 cut(s) | 1010, 1369, 2473 |
| BpiI | GAAGAC | 5 cut(s) | 14, 1764, 1797, 2235, 2673 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1289, 1321, 2285, 2317 |
| BpmI | CTGGAG | 3 cut(s) | 992, 1685, 2160 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1496, 3042 |
| Bpu14I | TTCGAA | 1 cut(s) | 2761 |
| BpuEI | CTTGAG | 2 cut(s) | 1197, 1345 |
| BpuMI | CCSGG | 2 cut(s) | 2420, 2421 |
| BsaI | GGTCTC | 1 cut(s) | 3407 |
| BsaJI | CCNNGG | 4 cut(s) | 464, 1103, 2183, 2419 |
| BsaWI | WCCGGW | 1 cut(s) | 316 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 53, 83 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 103, 367, 626, 788, 1419, 1501, 2431, 2738, 3012 |
| Bse1I | ACTGG | 8 cut(s) | 1005, 1364, 1449, 2390, 2468, 2681, 3248, 3417 |
| Bse3DI | GCAATG | 4 cut(s) | 954, 1619, 2413, 2592 |
| BseAI | TCCGGA | 1 cut(s) | 316 |
| BseBI | CCWGG | 3 cut(s) | 621, 1962, 2185 |
| BseDI | CCNNGG | 4 cut(s) | 464, 1103, 2183, 2419 |
| BseGI | GGATG | 8 cut(s) | 143, 223, 964, 1207, 1724, 1957, 2521, 3367 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 103, 367, 626, 788, 1419, 1501, 2431, 2738, 3012 |
| BseMI | GCAATG | 4 cut(s) | 954, 1619, 2413, 2592 |
| BseMII | CTCAG | 8 cut(s) | 376, 446, 1831, 1932, 2637, 2700, 3033, 3390 |
| BseNI | ACTGG | 8 cut(s) | 1005, 1364, 1449, 2390, 2468, 2681, 3248, 3417 |
| BsePI | GCGCGC | 1 cut(s) | 652 |
| BseRI | GAGGAG | 5 cut(s) | 166, 169, 172, 458, 3366 |
| BseSI | GKGCMC | 2 cut(s) | 2184, 2402 |
| BseXI | GCAGC | 5 cut(s) | 208, 241, 864, 1463, 3070 |
| BseYI | CCCAGC | 1 cut(s) | 518 |
| BsgI | GTGCAG | 1 cut(s) | 1821 |
| Bsh1236I | CGCG | 1 cut(s) | 654 |
| BshFI | GGCC | 3 cut(s) | 354, 2400, 2424 |
| BsiHKAI | GWGCWC | 2 cut(s) | 397, 463 |
| BsiHKCI | CYCGRG | 2 cut(s) | 390, 2419 |
| BsiSI | CCGG | 3 cut(s) | 317, 1483, 2420 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 103, 367, 626, 788, 1419, 1501, 2431, 2738, 3012 |
| BsmAI | GTCTC | 3 cut(s) | 675, 2705, 3407 |
| BsmI | GAATGC | 4 cut(s) | 98, 1534, 2112, 2114 |
| BsnI | GGCC | 3 cut(s) | 354, 2400, 2424 |
| Bso31I | GGTCTC | 1 cut(s) | 3407 |
| BsoBI | CYCGRG | 2 cut(s) | 390, 2419 |
| Bsp119I | TTCGAA | 1 cut(s) | 2761 |
| Bsp120I | GGGCCC | 1 cut(s) | 2398 |
| Bsp1286I | GDGCHC | 4 cut(s) | 397, 463, 2184, 2402 |
| Bsp13I | TCCGGA | 1 cut(s) | 316 |
| BspACI | CCGC | 5 cut(s) | 59, 343, 1295, 1486, 2322 |
| BspANI | GGCC | 3 cut(s) | 354, 2400, 2424 |
| BspCNI | CTCAG | 8 cut(s) | 375, 445, 1830, 1933, 2638, 2701, 3034, 3391 |
| BspEI | TCCGGA | 1 cut(s) | 316 |
| BspFNI | CGCG | 1 cut(s) | 654 |
| BspHI | TCATGA | 3 cut(s) | 439, 1222, 2908 |
| BspLI | GGNNCC | 5 cut(s) | 2088, 2198, 2326, 2400, 3229 |
| BspMAI | CTGCAG | 2 cut(s) | 2942, 3337 |
| BspMI | ACCTGC | 2 cut(s) | 118, 3196 |
| BspPI | GGATC | 4 cut(s) | 1318, 2074, 2081, 2094 |
| BspQI | GCTCTTC | 3 cut(s) | 960, 1269, 2544 |
| BspT104I | TTCGAA | 1 cut(s) | 2761 |
| BspTI | CTTAAG | 1 cut(s) | 329 |
| BspTNI | GGTCTC | 1 cut(s) | 3407 |
| BsrDI | GCAATG | 4 cut(s) | 954, 1619, 2413, 2592 |
| BsrI | ACTGG | 8 cut(s) | 1005, 1364, 1449, 2390, 2468, 2681, 3248, 3417 |
| BssECI | CCNNGG | 4 cut(s) | 464, 1103, 2183, 2419 |
| BssHII | GCGCGC | 1 cut(s) | 652 |
| BssSI | CACGAG | 1 cut(s) | 1574 |
| BssT1I | CCWWGG | 2 cut(s) | 464, 1103 |
| Bst2BI | CACGAG | 1 cut(s) | 1574 |
| Bst2UI | CCWGG | 3 cut(s) | 621, 1962, 2185 |
| Bst6I | CTCTTC | 8 cut(s) | 161, 387, 835, 960, 1269, 2286, 2478, 2544 |
| BstAFI | CTTAAG | 1 cut(s) | 329 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1335, 2946 |
| BstBI | TTCGAA | 1 cut(s) | 2761 |
| BstC8I | GCNNGC | 2 cut(s) | 654, 3281 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1499 |
| BstF5I | GGATG | 8 cut(s) | 143, 223, 964, 1207, 1724, 1957, 2521, 3367 |
| BstFNI | CGCG | 1 cut(s) | 654 |
| BstHHI | GCGC | 2 cut(s) | 654, 656 |
| BstMAI | GTCTC | 3 cut(s) | 675, 2705, 3407 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 260, 351, 1335, 2495, 2629, 2946, 3092, 3308 |
| BstNI | CCWGG | 3 cut(s) | 621, 1962, 2185 |
| BstNSI | RCATGY | 2 cut(s) | 728, 3012 |
| BstSCI | CCNGG | 5 cut(s) | 619, 1960, 2183, 2418, 2419 |
| BstSFI | CTRYAG | 5 cut(s) | 408, 2256, 2745, 2938, 3333 |
| BstSLI | GKGCMC | 2 cut(s) | 2184, 2402 |
| BstUI | CGCG | 1 cut(s) | 654 |
| BstV1I | GCAGC | 5 cut(s) | 208, 241, 864, 1463, 3070 |
| BstV2I | GAAGAC | 5 cut(s) | 14, 1764, 1797, 2235, 2673 |
| BstX2I | RGATCY | 5 cut(s) | 1180, 1310, 1400, 2066, 2086 |
| BstYI | RGATCY | 5 cut(s) | 1180, 1310, 1400, 2066, 2086 |
| BsuI | GTATCC | 2 cut(s) | 81, 2695 |
| BsuRI | GGCC | 3 cut(s) | 354, 2400, 2424 |
| BtsCI | GGATG | 8 cut(s) | 143, 223, 964, 1207, 1724, 1957, 2521, 3367 |
| BtsI | GCAGTG | 3 cut(s) | 463, 1846, 2935 |
| BveI | ACCTGC | 2 cut(s) | 118, 3196 |
| Cac8I | GCNNGC | 2 cut(s) | 654, 3281 |
| CaiI | CAGNNNCTG | 2 cut(s) | 877, 923 |
| CciI | TCATGA | 3 cut(s) | 439, 1222, 2908 |
| CfoI | GCGC | 2 cut(s) | 654, 656 |
| Cfr13I | GGNCC | 6 cut(s) | 353, 2197, 2325, 2398, 2399, 2422 |
| Cfr9I | CCCGGG | 1 cut(s) | 2419 |
| CseI | GACGC | 2 cut(s) | 1424, 2638 |
| CsiI | ACCWGGT | 1 cut(s) | 619 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3268, 3303 |
| DraI | TTTAAA | 2 cut(s) | 1564, 2736 |
| DraIII | CACNNNGTG | 1 cut(s) | 2177 |
| Eam1104I | CTCTTC | 8 cut(s) | 161, 387, 835, 960, 1269, 2286, 2478, 2544 |
| EarI | CTCTTC | 8 cut(s) | 161, 387, 835, 960, 1269, 2286, 2478, 2544 |
| Eco130I | CCWWGG | 2 cut(s) | 464, 1103 |
| Eco24I | GRGCYC | 1 cut(s) | 2402 |
| Eco31I | GGTCTC | 1 cut(s) | 3407 |
| Eco32I | GATATC | 1 cut(s) | 3295 |
| Eco47I | GGWCC | 2 cut(s) | 2197, 2325 |
| Eco57I | CTGAAG | 8 cut(s) | 945, 1177, 1289, 1776, 2433, 2775, 3135, 3435 |
| Eco88I | CYCGRG | 2 cut(s) | 390, 2419 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1499 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2399 |
| EcoRI | GAATTC | 2 cut(s) | 1388, 2827 |
| EcoRII | CCWGG | 3 cut(s) | 619, 1960, 2183 |
| EcoRV | GATATC | 1 cut(s) | 3295 |
| EcoT14I | CCWWGG | 2 cut(s) | 464, 1103 |
| EcoT22I | ATGCAT | 2 cut(s) | 2114, 2413 |
| EcoT38I | GRGCYC | 1 cut(s) | 2402 |
| ErhI | CCWWGG | 2 cut(s) | 464, 1103 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1284, 1316 |
| FauI | CCCGC | 2 cut(s) | 1479, 2315 |
| FauNDI | CATATG | 2 cut(s) | 1165, 2413 |
| FblI | GTMKAC | 1 cut(s) | 407 |
| Fnu4HI | GCNGC | 5 cut(s) | 222, 255, 878, 1452, 3084 |
| FokI | GGATG | 8 cut(s) | 150, 230, 971, 1214, 1711, 1944, 2528, 3374 |
| FriOI | GRGCYC | 1 cut(s) | 2402 |
| Fsp4HI | GCNGC | 5 cut(s) | 222, 255, 878, 1452, 3084 |
| FspBI | CTAG | 8 cut(s) | 183, 678, 882, 1065, 2045, 2840, 2892, 3269 |
| GlaI | GCGC | 2 cut(s) | 653, 655 |
| GluI | GCNGC | 5 cut(s) | 222, 255, 878, 1452, 3084 |
| GsaI | CCCAGC | 1 cut(s) | 522 |
| GsuI | CTGGAG | 3 cut(s) | 992, 1685, 2160 |
| HaeIII | GGCC | 3 cut(s) | 354, 2400, 2424 |
| HapII | CCGG | 3 cut(s) | 317, 1483, 2420 |
| HgaI | GACGC | 2 cut(s) | 1424, 2638 |
| HhaI | GCGC | 2 cut(s) | 654, 656 |
| Hin6I | GCGC | 2 cut(s) | 652, 654 |
| HinP1I | GCGC | 2 cut(s) | 652, 654 |
| HindIII | AAGCTT | 3 cut(s) | 49, 1271, 3281 |
| HpaII | CCGG | 3 cut(s) | 317, 1483, 2420 |
| HphI | GGTGA | 8 cut(s) | 550, 725, 1107, 1531, 2006, 2670, 3175, 3364 |
| Hpy166II | GTNNAC | 9 cut(s) | 200, 408, 899, 1046, 1739, 1936, 2224, 2528, 2867 |
| Hpy8I | GTNNAC | 9 cut(s) | 200, 408, 899, 1046, 1739, 1936, 2224, 2528, 2867 |
| HpyCH4IV | ACGT | 5 cut(s) | 119, 175, 1287, 1641, 1741 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 260, 351, 1335, 2495, 2629, 2946, 3092, 3308 |
| HpySE526I | ACGT | 5 cut(s) | 119, 175, 1287, 1641, 1741 |
| HspAI | GCGC | 2 cut(s) | 652, 654 |
| Kpn2I | TCCGGA | 1 cut(s) | 316 |
| LguI | GCTCTTC | 3 cut(s) | 960, 1269, 2544 |
| LmnI | GCTCC | 7 cut(s) | 466, 750, 973, 1297, 2141, 3227, 3379 |
| Lsp1109I | GCAGC | 5 cut(s) | 208, 241, 864, 1463, 3070 |
| LweI | GCATC | 5 cut(s) | 208, 658, 664, 3109, 3320 |
| MabI | ACCWGGT | 1 cut(s) | 619 |
| MaeI | CTAG | 8 cut(s) | 183, 678, 882, 1065, 2045, 2840, 2892, 3269 |
| MaeII | ACGT | 5 cut(s) | 119, 175, 1287, 1641, 1741 |
| MaeIII | GTNAC | 6 cut(s) | 718, 795, 807, 1239, 1820, 2459 |
| MfeI | CAATTG | 1 cut(s) | 3096 |
| MflI | RGATCY | 5 cut(s) | 1180, 1310, 1400, 2066, 2086 |
| MhlI | GDGCHC | 4 cut(s) | 397, 463, 2184, 2402 |
| MlyI | GAGTC | 7 cut(s) | 247, 371, 1375, 1676, 1787, 1885, 3110 |
| MmeI | TCCRAC | 3 cut(s) | 1629, 2352, 3205 |
| Mph1103I | ATGCAT | 2 cut(s) | 2114, 2413 |
| MroI | TCCGGA | 1 cut(s) | 316 |
| MroXI | GAANNNNTTC | 3 cut(s) | 338, 919, 2112 |
| MslI | CAYNNNNRTG | 4 cut(s) | 552, 588, 1003, 2575 |
| MspA1I | CMGCKG | 1 cut(s) | 1454 |
| MspCI | CTTAAG | 1 cut(s) | 329 |
| MspI | CCGG | 3 cut(s) | 317, 1483, 2420 |
| MspR9I | CCNGG | 5 cut(s) | 621, 1962, 2185, 2420, 2421 |
| MunI | CAATTG | 1 cut(s) | 3096 |
| Mva1269I | GAATGC | 4 cut(s) | 98, 1534, 2112, 2114 |
| MvaI | CCWGG | 3 cut(s) | 621, 1962, 2185 |
| MvnI | CGCG | 1 cut(s) | 654 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 260, 351, 1335, 2495, 2629, 2946, 3092, 3308 |
| NciI | CCSGG | 2 cut(s) | 2420, 2421 |
| NdeI | CATATG | 2 cut(s) | 1165, 2413 |
| NlaIV | GGNNCC | 5 cut(s) | 2088, 2198, 2326, 2400, 3229 |
| NmuCI | GTSAC | 3 cut(s) | 718, 1820, 2459 |
| NsiI | ATGCAT | 2 cut(s) | 2114, 2413 |
| NspI | RCATGY | 2 cut(s) | 728, 3012 |
| NspV | TTCGAA | 1 cut(s) | 2761 |
| OliI | CACNNNNGTG | 1 cut(s) | 1003 |
| PaeR7I | CTCGAG | 1 cut(s) | 390 |
| PagI | TCATGA | 3 cut(s) | 439, 1222, 2908 |
| PauI | GCGCGC | 1 cut(s) | 652 |
| PciI | ACATGT | 2 cut(s) | 724, 3008 |
| PciSI | GCTCTTC | 3 cut(s) | 960, 1269, 2544 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 42, 3175 |
| PctI | GAATGC | 4 cut(s) | 98, 1534, 2112, 2114 |
| PdmI | GAANNNNTTC | 3 cut(s) | 338, 919, 2112 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 103 |
| PfoI | TCCNGGA | 1 cut(s) | 1960 |
| PkrI | GCNGC | 5 cut(s) | 223, 256, 879, 1453, 3085 |
| PleI | GAGTC | 7 cut(s) | 246, 371, 1375, 1675, 1787, 1885, 3109 |
| PpsI | GAGTC | 7 cut(s) | 246, 371, 1375, 1675, 1787, 1885, 3109 |
| PscI | ACATGT | 2 cut(s) | 724, 3008 |
| PshBI | ATTAAT | 1 cut(s) | 1587 |
| Psp1406I | AACGTT | 1 cut(s) | 1641 |
| Psp6I | CCWGG | 3 cut(s) | 619, 1960, 2183 |
| PspFI | CCCAGC | 1 cut(s) | 518 |
| PspGI | CCWGG | 3 cut(s) | 619, 1960, 2183 |
| PspN4I | GGNNCC | 5 cut(s) | 2088, 2198, 2326, 2400, 3229 |
| PspOMI | GGGCCC | 1 cut(s) | 2398 |
| PspPI | GGNCC | 6 cut(s) | 353, 2197, 2325, 2398, 2399, 2422 |
| PstI | CTGCAG | 2 cut(s) | 2942, 3337 |
| PstNI | CAGNNNCTG | 2 cut(s) | 877, 923 |
| PsuI | RGATCY | 5 cut(s) | 1180, 1310, 1400, 2066, 2086 |
| PteI | GCGCGC | 1 cut(s) | 652 |
| PvuII | CAGCTG | 1 cut(s) | 1454 |
| RseI | CAYNNNNRTG | 4 cut(s) | 552, 588, 1003, 2575 |
| SapI | GCTCTTC | 3 cut(s) | 960, 1269, 2544 |
| SatI | GCNGC | 5 cut(s) | 222, 255, 878, 1452, 3084 |
| Sau96I | GGNCC | 6 cut(s) | 353, 2197, 2325, 2398, 2399, 2422 |
| ScaI | AGTACT | 2 cut(s) | 1443, 3031 |
| SchI | GAGTC | 7 cut(s) | 247, 371, 1375, 1676, 1787, 1885, 3110 |
| ScrFI | CCNGG | 5 cut(s) | 621, 1962, 2185, 2420, 2421 |
| SduI | GDGCHC | 4 cut(s) | 397, 463, 2184, 2402 |
| SexAI | ACCWGGT | 1 cut(s) | 619 |
| SfaNI | GCATC | 5 cut(s) | 208, 658, 664, 3109, 3320 |
| SfcI | CTRYAG | 5 cut(s) | 408, 2256, 2745, 2938, 3333 |
| Sfr274I | CTCGAG | 1 cut(s) | 390 |
| SfuI | TTCGAA | 1 cut(s) | 2761 |
| SinI | GGWCC | 2 cut(s) | 2197, 2325 |
| SlaI | CTCGAG | 1 cut(s) | 390 |
| SmaI | CCCGGG | 1 cut(s) | 2421 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 552, 588, 1003, 2575 |
| SmlI | CTYRAG | 4 cut(s) | 329, 390, 1212, 1324 |
| SmoI | CTYRAG | 4 cut(s) | 329, 390, 1212, 1324 |
| SsiI | CCGC | 5 cut(s) | 59, 343, 1295, 1486, 2322 |
| SspI | AATATT | 1 cut(s) | 2000 |
| SspMI | CTAG | 8 cut(s) | 183, 678, 882, 1065, 2045, 2840, 2892, 3269 |
| StyD4I | CCNGG | 5 cut(s) | 619, 1960, 2183, 2418, 2419 |
| StyI | CCWWGG | 2 cut(s) | 464, 1103 |
| TaiI | ACGT | 5 cut(s) | 122, 178, 1290, 1644, 1744 |
| TatI | WGTACW | 3 cut(s) | 1441, 1933, 3029 |
| TseFI | GTSAC | 3 cut(s) | 718, 1820, 2459 |
| TseI | GCWGC | 5 cut(s) | 221, 254, 877, 1451, 3083 |
| Tsp45I | GTSAC | 3 cut(s) | 718, 1820, 2459 |
| TspGWI | ACGGA | 2 cut(s) | 748, 2842 |
| TspMI | CCCGGG | 1 cut(s) | 2419 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 103 |
| Vha464I | CTTAAG | 1 cut(s) | 329 |
| VpaK11BI | GGWCC | 2 cut(s) | 2197, 2325 |
| VspI | ATTAAT | 1 cut(s) | 1587 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1499 |
| XapI | RAATTY | 8 cut(s) | 371, 1251, 1388, 1870, 2282, 2827, 2848, 3435 |
| XceI | RCATGY | 2 cut(s) | 728, 3012 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1968 |
| XhoI | CTCGAG | 1 cut(s) | 390 |
| XmaI | CCCGGG | 1 cut(s) | 2419 |
| XmiI | GTMKAC | 1 cut(s) | 407 |
| XmnI | GAANNNNTTC | 3 cut(s) | 338, 919, 2112 |
| XspI | CTAG | 8 cut(s) | 183, 678, 882, 1065, 2045, 2840, 2892, 3269 |
| ZrmI | AGTACT | 2 cut(s) | 1443, 3031 |
| Zsp2I | ATGCAT | 2 cut(s) | 2114, 2413 |