Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008604

Physical Location & Seq

Genomic Coordinates Reverse (-)

21727367 .. 21732879

Gene Structure 5513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1184000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2133 bp

ATGGCTTCATACCGGCCATTCCCACCCCAATCATCGTTCGCGCCACCACCAAATCAAAACCCTCTACCGCCAGCACCGCCGCTTCCGCAACAGCGAGGCAGTCAGTATAACCAGAATTGGGGATATAATGCTAGTAGTGGTGGTTCTGGTGGCAGCGATGGGGCTGTTCCGGCGGCTCCTTCTTCGTATCCACCAAATTACAATTACCAGCATAGTAGTTATGCCCCTCCAAGAACTCAACACCCTCGTCCACCACCACAATACAACTATCAAACACCGCCTCCACCACCACCCGAGTCTTCATACCCACCACCACCGCCCCCTCAAGCTCCTCCAGCGGGGCAAAGTAATATGCCATTACAGCCTCCACAAGCCCCCATGTACTACCAGAATTCTCAGTATTCACAGTATAGTCACCAGCCAATCCAGCCTTCGCAGCAGCCACTACCTCCGCCCCCACCACCTTTGTCCCCTAATTCTTCTGTACCACCGCCACCACCTCCCCCTGGTTCACCTCCACCACCCCCTCCTCAAAGTAAGGATAGTGGGGTAGATAGGGGATCCCATGACAAAGGGGCTTCCAGAGAGGCATCACTGTCCGGGAGGCGTGAACGTGGGCATTTGAATCATGGGGTTCCTGAAAAACAGCAGAAGCCCCCTGTTCCTTCAGTGCCAGCAAAAAAAGCAAATGGGCCCCCAGGGAGAGTGGAAACGGAGGAAGAGAGGAGATTAAGGAAGAAGAGAGAGTTTGAGAAACAAAGGCAAGAAGAGAAGCATAGGCAGCAGCTGAAGGATTCCCAAAACTCAGTTTTGCAGAAGACGCATATGTTGTCTTCTGGGAAGGGACATGGTTCCATTGTTGGGTCGCGAATGGGGGAAAGGAGAGCTACTCCATTTTTGAGTGGTGAGAGGACTGAAAATAGGCTAAAGAAGCCAACGACATTCGTATGCAAGTTGAAATTCCGGAATGAACTTCCAGATCCTAGTGCACAGCCAAAGCTTATGTCATTGAAGAAAGAGAAGGATCAATATACAAAATACACAATAACATCGTTGGAGAAAACATACAAGCCCAAGCTTTTCGTTGAGCCAGATCTTGGGATTCCTCTTGACCTACTCGACCTCAGTGTATACAATCCTCCTCCTCCAAGTGTTAGACTACCCCTTGCTTTGGAAGATGAGGAATTATTGCGGGATGATGTAGCAGTGACACCTGTGAAAAAGGATGGCATCAGAAGAAAAGAGCGGCCTACTGATAAAGGGGTTGCATGGCTAGTTAAAACCCAATATATATCTCCTCTTAGCATGGAGTCTGCAAGACAGTCTTTAACTGAAAAACAAGCAAAGGAACTGCGGGAAATGAAGGGTCGCAACATTTTGGAGAACCTCAATGACAGGGAAAGACAAATCAAGGAAATTGAGGCATCATTTGAGGCCTGCAAGTCACGACCTGTTCATGCAACCAACAAGAACTTATACGCTGAAGAGGTTCTACCTCTGTTGCCTGATTTTGACCGGTACGACGACCAATTTGTCCTTGCATCATTTGATGGTGCTCCTACTGCTGATTCAGAAATCTACAGCAAGTTGGACCAGTCGGTTCATGATGCCTACGAATCAAGAGCCATAATGAAAAGTTATAAGGTAACAGGTGTAGATCCAGCTAACCCTGAGAAATTTTTGGCTTACATGGTTCCTTCACCGAATGAGCTGTCAAAAGATCCCTACGATGAATCTGAAGATGTTTCATATTCTTGGGTTCGCGAGTATCATTACGATGTAAGAGGTGATGATGTACACGACCCCACAACGTACCTTGTTTCCTTTGATGATGATGAAGCACGCTATGCGCCCCTTCCCACAAAGCTTGTTTTAAGAAAAAAGAGATCCAAAGAGGGAAAAACCAGTGATGAGGTTGAGCATTTTCCTGCACCTGCAAGAGTGACGGTTAGGCGGAGACCAACTGTTGCATCAATTGAACTAAAGGATGCAGGGGATTATTTAAGGGGATCTGTATCAAAATTGAGAACAAGAGGCTATGATGTTGAAGATACCCTTGAAAGGCCACAAAAGATTGCACGACACCATGATATGGATGAATATAGTGGTGGCGACGATGATTTATCCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009909 GO:0009910 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0019538 GO:0030880 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

Paf1

Protein Analysis

711

Amino Acids

79.71

Weight (kDa)

8.34

Isoelectric Point (pI)

68.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Paf1	PF03985	315 - 638	1.2e-52	Paf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79730
fragaria_vesca	FvH4_6g32381 FvH4_6g32381
malus_domestica	MD09G1202900.v1.1 MD17G1184000.v1.1
prunus_persica	Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.3G059100_v2.0.a1
pyrus_communis	pycom17g19340
rosa_chinensis	RchiOBHm_Chr2g0140531
rosa_laevigata	RLG00000019875
rosa_multiflora	Rmu_sc0002490.1_g000024
rosa_roxburghii	Rroxscaffold_153G00436660 Rroxscaffold_2G00104720
rosa_rugosa	Rorug02G0363400 Rorug02G0363500
rosa_samantha	Rh2AG414300 Rh2BG424200 Rh2CG400700 Rh2DG434200
rosa_wichuraiana	Rw2G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1641
AarI	CACCTGC	1 cut(s)	1942
AasI	GACNNNNNNGTC	1 cut(s)	1532
Acc36I	ACCTGC	1 cut(s)	1942
AccB7I	CCANNNNNTGG	2 cut(s)	1097, 2092
AccBSI	CCGCTC	1 cut(s)	1246
AccI	GTMKAC	1 cut(s)	1131
AccII	CGCG	3 cut(s)	41, 868, 1764
AccIII	TCCGGA	1 cut(s)	963
AclWI	GGATC	8 cut(s)	555, 568, 974, 1032, 1652, 1715, 1881, 2017
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	3 cut(s)	391, 959, 1676
AcuI	CTGAAG	4 cut(s)	651, 809, 1503, 1758
AfaI	GTAC	5 cut(s)	383, 486, 1520, 1797, 1814
AfiI	CCNNNNNNNGG	8 cut(s)	118, 338, 506, 861, 1097, 1171, 2061, 2092
AgeI	ACCGGT	1 cut(s)	1515
AgsI	TTSAA	6 cut(s)	625, 958, 1012, 1979, 2048, 2060
AjnI	CCWGG	2 cut(s)	505, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AluBI	AGCT	8 cut(s)	329, 787, 887, 1000, 1078, 1664, 1711, 1867
AluI	AGCT	8 cut(s)	329, 787, 887, 1000, 1078, 1664, 1711, 1867
Alw21I	GWGCWC	2 cut(s)	991, 1558
Alw26I	GTCTC	1 cut(s)	1951
Alw44I	GTGCAC	1 cut(s)	987
AlwI	GGATC	8 cut(s)	555, 568, 974, 1032, 1652, 1715, 1881, 2017
AlwNI	CAGNNNCTG	1 cut(s)	787
Ama87I	CYCGRG	1 cut(s)	293
Aor13HI	TCCGGA	1 cut(s)	963
AoxI	GGCC	5 cut(s)	14, 692, 1247, 1434, 2063
ApaI	GGGCCC	1 cut(s)	696
ApaLI	GTGCAC	1 cut(s)	987
ApeKI	GCWGC	5 cut(s)	153, 436, 439, 781, 784
ApoI	RAATTY	3 cut(s)	391, 959, 1676
ArsI	GACNNNNNNTTYG	6 cut(s)	989, 1021, 1514, 1546, 1697, 1729
AsiGI	ACCGGT	1 cut(s)	1515
Asp700I	GAANNNNTTC	1 cut(s)	1488
AspLEI	GCGC	2 cut(s)	43, 1852
AspS9I	GGNCC	3 cut(s)	692, 693, 1591
AsuC2I	CCSGG	1 cut(s)	601
AsuHPI	GGTGA	5 cut(s)	407, 504, 917, 1692, 1799
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	1591
BaeGI	GKGCMC	2 cut(s)	696, 991
BamHI	GGATCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	696
BarI	GAAGNNNNNNTAC	2 cut(s)	1476, 1508
BbsI	GAAGAC	3 cut(s)	291, 824, 825
Bbv12I	GWGCWC	2 cut(s)	991, 1558
BbvI	GCAGC	5 cut(s)	165, 448, 451, 793, 796
BccI	CCATC	3 cut(s)	152, 1220, 1544
BciT130I	CCWGG	2 cut(s)	507, 699
BciVI	GTATCC	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	1951
BfaI	CTAG	3 cut(s)	132, 984, 1274
BfmI	CTRYAG	1 cut(s)	1579
BfuAI	ACCTGC	1 cut(s)	1942
BfuI	GTATCC	1 cut(s)	198
BglII	AGATCT	1 cut(s)	1093
BisI	GCNGC	8 cut(s)	80, 154, 174, 437, 440, 782, 785, 1247
BlsI	GCNGC	8 cut(s)	81, 155, 175, 438, 441, 783, 786, 1248
Bme1390I	CCNGG	3 cut(s)	507, 601, 699
Bme18I	GGWCC	1 cut(s)	1591
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	3 cut(s)	692, 693, 1591
BmiI	GGNNCC	7 cut(s)	177, 562, 636, 694, 695, 853, 1695
BmrFI	CCNGG	3 cut(s)	507, 601, 699
BmsI	GCATC	7 cut(s)	599, 1239, 1433, 1550, 1597, 1978, 1979
BpiI	GAAGAC	3 cut(s)	291, 824, 825
BplI	GAGNNNNNCTC	2 cut(s)	874, 906
BpmI	CTGGAG	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	601
BsaBI	GATNNNNATC	1 cut(s)	2014
BsaI	GGTCTC	1 cut(s)	1951
BsaJI	CCNNGG	3 cut(s)	505, 697, 698
BsaWI	WCCGGW	2 cut(s)	963, 1515
BsaXI	ACNNNNNCTCC	2 cut(s)	265, 295
Bsc4I	CCNNNNNNNGG	8 cut(s)	118, 338, 506, 861, 1097, 1171, 2061, 2092
Bse118I	RCCGGY	2 cut(s)	12, 1515
Bse1I	ACTGG	2 cut(s)	1594, 1905
Bse8I	GATNNNNATC	1 cut(s)	2014
BseAI	TCCGGA	1 cut(s)	963
BseBI	CCWGG	2 cut(s)	507, 699
BseDI	CCNNGG	3 cut(s)	505, 697, 698
BseGI	GGATG	4 cut(s)	1201, 1231, 1993, 2101
BseJI	GATNNNNATC	1 cut(s)	2014
BseLI	CCNNNNNNNGG	8 cut(s)	118, 338, 506, 861, 1097, 1171, 2061, 2092
BseMII	CTCAG	4 cut(s)	410, 819, 1138, 1662
BseNI	ACTGG	2 cut(s)	1594, 1905
BseRI	GAGGAG	6 cut(s)	321, 519, 739, 1131, 1134, 1287
BseSI	GKGCMC	2 cut(s)	696, 991
BseXI	GCAGC	5 cut(s)	165, 448, 451, 793, 796
BsgI	GTGCAG	1 cut(s)	1914
Bsh1236I	CGCG	3 cut(s)	41, 868, 1764
BshFI	GGCC	5 cut(s)	16, 694, 1249, 1436, 2065
BshTI	ACCGGT	1 cut(s)	1515
BsiHKAI	GWGCWC	2 cut(s)	991, 1558
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	5 cut(s)	13, 170, 600, 964, 1516
BslFI	GGGAC	2 cut(s)	454, 858
BslI	CCNNNNNNNGG	8 cut(s)	118, 338, 506, 861, 1097, 1171, 2061, 2092
BsmAI	GTCTC	1 cut(s)	1951
BsmFI	GGGAC	2 cut(s)	454, 858
BsnI	GGCC	5 cut(s)	16, 694, 1249, 1436, 2065
Bso31I	GGTCTC	1 cut(s)	1951
BsoBI	CYCGRG	1 cut(s)	293
Bsp120I	GGGCCC	1 cut(s)	692
Bsp1286I	GDGCHC	3 cut(s)	696, 991, 1558
Bsp13I	TCCGGA	1 cut(s)	963
Bsp1407I	TGTACA	1 cut(s)	1795
Bsp143I	GATC	8 cut(s)	560, 979, 1024, 1093, 1657, 1720, 1886, 2009
Bsp68I	TCGCGA	2 cut(s)	868, 1764
BspANI	GGCC	5 cut(s)	16, 694, 1249, 1436, 2065
BspCNI	CTCAG	4 cut(s)	409, 818, 1137, 1663
BspEI	TCCGGA	1 cut(s)	963
BspFNI	CGCG	3 cut(s)	41, 868, 1764
BspHI	TCATGA	1 cut(s)	1603
BspLI	GGNNCC	7 cut(s)	177, 562, 636, 694, 695, 853, 1695
BspMI	ACCTGC	1 cut(s)	1942
BspPI	GGATC	8 cut(s)	555, 568, 974, 1032, 1652, 1715, 1881, 2017
BspTNI	GGTCTC	1 cut(s)	1951
BsrBI	CCGCTC	1 cut(s)	1246
BsrFI	RCCGGY	2 cut(s)	12, 1515
BsrGI	TGTACA	1 cut(s)	1795
BsrI	ACTGG	2 cut(s)	1594, 1905
BssAI	RCCGGY	2 cut(s)	12, 1515
BssECI	CCNNGG	3 cut(s)	505, 697, 698
BssMI	GATC	8 cut(s)	560, 979, 1024, 1093, 1657, 1720, 1886, 2009
BssNAI	GTATAC	1 cut(s)	1132
Bst1107I	GTATAC	1 cut(s)	1132
Bst2UI	CCWGG	2 cut(s)	507, 699
Bst4CI	ACNGT	5 cut(s)	408, 597, 1323, 1948, 1966
Bst6I	CTCTTC	4 cut(s)	714, 734, 762, 1479
BstAPI	GCANNNNNTGC	1 cut(s)	1847
BstAUI	TGTACA	1 cut(s)	1795
BstC8I	GCNNGC	4 cut(s)	72, 675, 1438, 1843
BstDEI	CTNAG	5 cut(s)	396, 805, 1124, 1301, 1671
BstF5I	GGATG	4 cut(s)	1201, 1231, 1993, 2101
BstFNI	CGCG	3 cut(s)	41, 868, 1764
BstHHI	GCGC	2 cut(s)	43, 1852
BstKTI	GATC	8 cut(s)	563, 982, 1027, 1096, 1660, 1723, 1889, 2012
BstMAI	GTCTC	1 cut(s)	1951
BstMBI	GATC	8 cut(s)	560, 979, 1024, 1093, 1657, 1720, 1886, 2009
BstNI	CCWGG	2 cut(s)	507, 699
BstSCI	CCNGG	3 cut(s)	505, 599, 697
BstSFI	CTRYAG	1 cut(s)	1579
BstSLI	GKGCMC	2 cut(s)	696, 991
BstUI	CGCG	3 cut(s)	41, 868, 1764
BstV1I	GCAGC	5 cut(s)	165, 448, 451, 793, 796
BstV2I	GAAGAC	3 cut(s)	291, 824, 825
BstX2I	RGATCY	7 cut(s)	560, 979, 1093, 1657, 1720, 1886, 2009
BstYI	RGATCY	7 cut(s)	560, 979, 1093, 1657, 1720, 1886, 2009
BstZ17I	GTATAC	1 cut(s)	1132
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	5 cut(s)	16, 694, 1249, 1436, 2065
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	4 cut(s)	1201, 1231, 1993, 2101
BtsI	GCAGTG	1 cut(s)	1212
BtsIMutI	CAGTG	5 cut(s)	593, 675, 1132, 1212, 1912
BtuMI	TCGCGA	2 cut(s)	868, 1764
BveI	ACCTGC	1 cut(s)	1942
Cac8I	GCNNGC	4 cut(s)	72, 675, 1438, 1843
CaiI	CAGNNNCTG	1 cut(s)	787
CciI	TCATGA	1 cut(s)	1603
CfoI	GCGC	2 cut(s)	43, 1852
Cfr10I	RCCGGY	2 cut(s)	12, 1515
Cfr13I	GGNCC	3 cut(s)	692, 693, 1591
CseI	GACGC	1 cut(s)	829
Csp6I	GTAC	5 cut(s)	382, 485, 1519, 1796, 1813
CspAI	ACCGGT	1 cut(s)	1515
CspCI	CAANNNNNGTGG	4 cut(s)	447, 482, 1849, 1884
CviQI	GTAC	5 cut(s)	382, 485, 1519, 1796, 1813
DdeI	CTNAG	5 cut(s)	396, 805, 1124, 1301, 1671
DpnI	GATC	8 cut(s)	562, 981, 1026, 1095, 1659, 1722, 1888, 2011
DpnII	GATC	8 cut(s)	560, 979, 1024, 1093, 1657, 1720, 1886, 2009
DrdI	GACNNNNNNGTC	1 cut(s)	1532
DseDI	GACNNNNNNGTC	1 cut(s)	1532
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	4 cut(s)	714, 734, 762, 1479
EarI	CTCTTC	4 cut(s)	714, 734, 762, 1479
EciI	GGCGGA	2 cut(s)	441, 1969
Eco147I	AGGCCT	1 cut(s)	1436
Eco24I	GRGCYC	1 cut(s)	696
Eco31I	GGTCTC	1 cut(s)	1951
Eco47I	GGWCC	1 cut(s)	1591
Eco57I	CTGAAG	4 cut(s)	651, 809, 1503, 1758
Eco88I	CYCGRG	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	693
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	505, 697
EcoT38I	GRGCYC	1 cut(s)	696
FalI	AAGNNNNNCTT	4 cut(s)	1309, 1341, 2040, 2072
FaqI	GGGAC	2 cut(s)	454, 858
FauI	CCCGC	3 cut(s)	331, 1185, 1347
FauNDI	CATATG	1 cut(s)	825
FblI	GTMKAC	1 cut(s)	1131
Fnu4HI	GCNGC	8 cut(s)	80, 154, 174, 437, 440, 782, 785, 1247
FokI	GGATG	4 cut(s)	1208, 1238, 2000, 2108
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	8 cut(s)	80, 154, 174, 437, 440, 782, 785, 1247
FspBI	CTAG	3 cut(s)	132, 984, 1274
GlaI	GCGC	2 cut(s)	42, 1851
GluI	GCNGC	8 cut(s)	80, 154, 174, 437, 440, 782, 785, 1247
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	5 cut(s)	16, 694, 1249, 1436, 2065
HapII	CCGG	5 cut(s)	13, 170, 600, 964, 1516
HgaI	GACGC	1 cut(s)	829
HhaI	GCGC	2 cut(s)	43, 1852
Hin6I	GCGC	2 cut(s)	41, 1850
HinP1I	GCGC	2 cut(s)	41, 1850
HindIII	AAGCTT	3 cut(s)	998, 1076, 1865
HinfI	GANTC	8 cut(s)	296, 625, 794, 1102, 1310, 1568, 1616, 1733
HpaII	CCGG	5 cut(s)	13, 170, 600, 964, 1516
HphI	GGTGA	5 cut(s)	407, 504, 917, 1692, 1799
Hpy166II	GTNNAC	6 cut(s)	251, 512, 611, 989, 1132, 1798
Hpy188I	TCNGA	4 cut(s)	1235, 1573, 1738, 2128
Hpy8I	GTNNAC	6 cut(s)	251, 512, 611, 989, 1132, 1798
Hpy99I	CGWCG	2 cut(s)	1526, 2117
HpyAV	CCTTC	9 cut(s)	189, 441, 675, 784, 835, 1015, 1357, 1707, 1865
HpyCH4III	ACNGT	5 cut(s)	408, 597, 1323, 1948, 1966
HpyCH4IV	ACGT	2 cut(s)	613, 1811
HpyF3I	CTNAG	5 cut(s)	396, 805, 1124, 1301, 1671
HpySE526I	ACGT	2 cut(s)	613, 1811
HspAI	GCGC	2 cut(s)	41, 1850
Kpn2I	TCCGGA	1 cut(s)	963
Kzo9I	GATC	8 cut(s)	560, 979, 1024, 1093, 1657, 1720, 1886, 2009
LmnI	GCTCC	3 cut(s)	181, 334, 1561
Lsp1109I	GCAGC	5 cut(s)	165, 448, 451, 793, 796
LweI	GCATC	7 cut(s)	599, 1239, 1433, 1550, 1597, 1978, 1979
MaeI	CTAG	3 cut(s)	132, 984, 1274
MaeII	ACGT	2 cut(s)	613, 1811
MaeIII	GTNAC	5 cut(s)	413, 1207, 1443, 1645, 1942
MalI	GATC	8 cut(s)	562, 981, 1026, 1095, 1659, 1722, 1888, 2011
MbiI	CCGCTC	1 cut(s)	1246
MboI	GATC	8 cut(s)	560, 979, 1024, 1093, 1657, 1720, 1886, 2009
MfeI	CAATTG	1 cut(s)	1974
MflI	RGATCY	7 cut(s)	560, 979, 1093, 1657, 1720, 1886, 2009
MhlI	GDGCHC	3 cut(s)	696, 991, 1558
MlyI	GAGTC	2 cut(s)	305, 1319
MmeI	TCCRAC	2 cut(s)	1035, 1569
MroI	TCCGGA	1 cut(s)	963
MroXI	GAANNNNTTC	1 cut(s)	1488
MseI	TTAA	6 cut(s)	731, 1278, 1328, 1874, 2003, 2131
MslI	CAYNNNNRTG	2 cut(s)	946, 1776
MspA1I	CMGCKG	2 cut(s)	338, 787
MspI	CCGG	5 cut(s)	13, 170, 600, 964, 1516
MspR9I	CCNGG	3 cut(s)	507, 601, 699
MunI	CAATTG	1 cut(s)	1974
MvaI	CCWGG	2 cut(s)	507, 699
MvnI	CGCG	3 cut(s)	41, 868, 1764
NciI	CCSGG	1 cut(s)	601
NdeI	CATATG	1 cut(s)	825
NdeII	GATC	8 cut(s)	560, 979, 1024, 1093, 1657, 1720, 1886, 2009
NlaIV	GGNNCC	7 cut(s)	177, 562, 636, 694, 695, 853, 1695
NmuCI	GTSAC	4 cut(s)	413, 1207, 1443, 1942
NruI	TCGCGA	2 cut(s)	868, 1764
PagI	TCATGA	1 cut(s)	1603
PaqCI	CACCTGC	1 cut(s)	1942
PasI	CCCWGGG	1 cut(s)	698
PceI	AGGCCT	1 cut(s)	1436
PdmI	GAANNNNTTC	1 cut(s)	1488
PfeI	GAWTC	6 cut(s)	625, 794, 1102, 1568, 1616, 1733
PflMI	CCANNNNNTGG	2 cut(s)	1097, 2092
PfoI	TCCNGGA	1 cut(s)	599
PinAI	ACCGGT	1 cut(s)	1515
PkrI	GCNGC	8 cut(s)	81, 155, 175, 438, 441, 783, 786, 1248
PleI	GAGTC	2 cut(s)	304, 1318
PpsI	GAGTC	2 cut(s)	304, 1318
PsiI	TTATAA	1 cut(s)	1641
Psp6I	CCWGG	2 cut(s)	505, 697
PspGI	CCWGG	2 cut(s)	505, 697
PspN4I	GGNNCC	7 cut(s)	177, 562, 636, 694, 695, 853, 1695
PspOMI	GGGCCC	1 cut(s)	692
PspPI	GGNCC	3 cut(s)	692, 693, 1591
PsrI	GAACNNNNNNTAC	2 cut(s)	127, 159
PstNI	CAGNNNCTG	1 cut(s)	787
PsuI	RGATCY	7 cut(s)	560, 979, 1093, 1657, 1720, 1886, 2009
PvuII	CAGCTG	1 cut(s)	787
RruI	TCGCGA	2 cut(s)	868, 1764
RsaI	GTAC	5 cut(s)	383, 486, 1520, 1797, 1814
RsaNI	GTAC	5 cut(s)	382, 485, 1519, 1796, 1813
RseI	CAYNNNNRTG	2 cut(s)	946, 1776
SaqAI	TTAA	6 cut(s)	731, 1278, 1328, 1874, 2003, 2131
SatI	GCNGC	8 cut(s)	80, 154, 174, 437, 440, 782, 785, 1247
Sau3AI	GATC	8 cut(s)	560, 979, 1024, 1093, 1657, 1720, 1886, 2009
Sau96I	GGNCC	3 cut(s)	692, 693, 1591
SchI	GAGTC	2 cut(s)	305, 1319
ScrFI	CCNGG	3 cut(s)	507, 601, 699
SduI	GDGCHC	3 cut(s)	696, 991, 1558
SfaNI	GCATC	7 cut(s)	599, 1239, 1433, 1550, 1597, 1978, 1979
SfcI	CTRYAG	1 cut(s)	1579
SinI	GGWCC	1 cut(s)	1591
SmiMI	CAYNNNNRTG	2 cut(s)	946, 1776
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
SseBI	AGGCCT	1 cut(s)	1436
SspMI	CTAG	3 cut(s)	132, 984, 1274
StuI	AGGCCT	1 cut(s)	1436
StyD4I	CCNGG	3 cut(s)	505, 599, 697
TaaI	ACNGT	5 cut(s)	408, 597, 1323, 1948, 1966
TaiI	ACGT	2 cut(s)	616, 1814
TaqI	TCGA	1 cut(s)	1119
TatI	WGTACW	2 cut(s)	381, 1795
TauI	GCSGC	3 cut(s)	82, 176, 1249
TfiI	GAWTC	6 cut(s)	625, 794, 1102, 1568, 1616, 1733
Tru1I	TTAA	6 cut(s)	731, 1278, 1328, 1874, 2003, 2131
Tru9I	TTAA	6 cut(s)	731, 1278, 1328, 1874, 2003, 2131
TscAI	CASTG	5 cut(s)	600, 675, 1132, 1212, 1912
TseFI	GTSAC	4 cut(s)	413, 1207, 1443, 1942
TseI	GCWGC	5 cut(s)	153, 436, 439, 781, 784
Tsp45I	GTSAC	4 cut(s)	413, 1207, 1443, 1942
TspGWI	ACGGA	1 cut(s)	728
TspRI	CASTG	5 cut(s)	600, 675, 1132, 1212, 1912
Van91I	CCANNNNNTGG	2 cut(s)	1097, 2092
VneI	GTGCAC	1 cut(s)	987
VpaK11BI	GGWCC	1 cut(s)	1591
XapI	RAATTY	3 cut(s)	391, 959, 1676
XmiI	GTMKAC	1 cut(s)	1131
XmnI	GAANNNNTTC	1 cut(s)	1488
XspI	CTAG	3 cut(s)	132, 984, 1274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.