Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008604

Physical Location & Seq

Genomic Coordinates Forward (+)

54476334 .. 54483734

Gene Structure 7401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG400700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1836 bp

ATGGCTTCTTACCGGCCATTCCCGCCTCAACCGGCGTTTCCGCCACCGCCGCCGAATCAAAACCCCATAGCGCCGCCGCCACGTGGCAATCAGTATAACCAGAATTGGGGTTATAATGGCGGCGGCGGCGATGGGCCTGTGCCGGCTGCTCCTTCTTCATACCCCCAAAACTACATTCACCACCCACATAGTAATTATGGTCCTCCTAGAGCTCAGCATCCTCACCCACCACCGCAATACTCGTACCCGCCGCCACCGCCTCCTCCGCCGGACTCTTCATACCCACCTCCACCGCCTCCTCAAGCTCCTCCGGGGAAAAACATGCCCCTACAGCCTCCACAAGCCCCAATGTACTACCAGTCTAACTCTCAATATGCTCAGTATAGTCACCAGGCAATGCAGCCACCGCCGCCTCTGCCGCCGCCTTTGTCTCCTAGTTCGTCTATTCCACCGCCACCCCCGCCTCCAAATTCTCCACCACCTCCCCCGCCGCCGCAGAGTAGGGAGAGTGGTTTCGATAAGGGGCCAGACTACAAAGGGGCTTCCAAGGATGTGGGAGCTTCTGCTGCCAAGCGGGAACATGGGCATTCGAACCATCATGGGATTCCCCATAAACACAAGCCCCCTGTTCCGTTGGTGCCGGTGAAGAAGTCTAATGGGCCGCCGGGGAGAGTGGAGACGGAGGAAGAGAGGAGGTTGAGGAAGAAGAGGGAGTTTGAGAAGCAAAGACAAGAGGAGAAGCATAGGCAGCAGCTGAAGGAGTCCCAAAATTCGGTTTTGCAGAAGACACATATGTTGTCGTCTGGGAAGGGACATGGATCGATTGCAGGGTCACGAATGGGGGAAAGGAGGGCCACTCCATTCTTGAGTGGTGAGAGGGCTGAAAATAGGCTAAAGAAGCCAACAACATTTGTGTGCAAGTTGAAATTCCGGAATGAACTTCCAGATCCAAGTGCACAACCCAAGCTCATGTCCATGAAGAAAGACAAAGATCAATATACAAAATACACGATTACATCGTTAGAGAAAAATTACAAGCCCAAGCTTTTTGTTGAGCCAGATCTTGGGATACCTCTTGACCTGCTTGACCTCAGTGTGTACAATCCTCCTCCCGGTCCTAGACCACCACTTGCACCAGAAGACGAGGAATTATTGCGTGATGATGTAGCAGTGACCCCTGTTAAAAAAGATGGCATCAGAAGAAAAGAGCGACCTACGGATAAAGGAGTTGCATGGCTGGTTAAAACACAATATATTTCTCCTCTTAGCATGGATTCAGCAAAACAGTCTCTAACAGAAAAACAAGCAAAAGAACTGCGGGAAATGAAGGGAGGACGCAATCTTTTGGACAACCTTAATGATAGGGAGAGGCAGATAAAGGAAATTGAGGCATCCTTTGAGGCCTGCAAGTCGCACCCTGTTCATGCAACCAATAAAAATCTATACCCTGTTGAGGTTCTACCTCTTTTGCCTGATTTTGAGCGGTATGATGACCAATTCGTCCTTGCTGCATTTGATGGTGCTCCCACTGCTGATTCAGAAATCTACAGCAAGTTGGATCAGTCTGATCATGATGTCTGTGAATCAAGGGCAATTATGAAAAGTTATAAGGTAACAGGTGCAGACCCAGCTAATCCAGACAAATTTTTGGCGTACATGGTCCCTTCTCCAAACGAGCTATCAAAGGATCCATATGATGAATCTGAAGATGTTTCATATTCTTGGGTTCGCGAGTATCAGTATGATGTAAGAGGTGACGATGTTGATGATCTCACCACATACCTTGTATCATTTGATGAAGATGAAGCACGTTATGCGGTATCCACCTCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009909 GO:0009910 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0019538 GO:0030880 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

Paf1

Protein Analysis

611

Amino Acids

68.31

Weight (kDa)

7.31

Isoelectric Point (pI)

61.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Paf1	PF03985	304 - 601	3.6e-51	Paf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79730
fragaria_vesca	FvH4_6g32381 FvH4_6g32381
malus_domestica	MD09G1202900.v1.1 MD17G1184000.v1.1
prunus_persica	Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.3G059100_v2.0.a1
pyrus_communis	pycom17g19340
rosa_chinensis	RchiOBHm_Chr2g0140531
rosa_laevigata	RLG00000019875
rosa_multiflora	Rmu_sc0002490.1_g000024
rosa_roxburghii	Rroxscaffold_153G00436660 Rroxscaffold_2G00104720
rosa_rugosa	Rorug02G0363400 Rorug02G0363500
rosa_samantha	Rh2AG414300 Rh2BG424200 Rh2CG400700 Rh2DG434200
rosa_wichuraiana	Rw2G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	114, 1608
AasI	GACNNNNNNGTC	1 cut(s)	1499
Acc36I	ACCTGC	1 cut(s)	1089
AccB1I	GGYRCC	1 cut(s)	637
AccB7I	CCANNNNNTGG	1 cut(s)	1064
AccBSI	CCGCTC	1 cut(s)	1483
AccII	CGCG	1 cut(s)	1731
AccIII	TCCGGA	1 cut(s)	930
AclWI	GGATC	5 cut(s)	826, 941, 1566, 1682, 1695
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	4 cut(s)	469, 769, 926, 1643
AcuI	CTGAAG	2 cut(s)	776, 1725
AcvI	CACGTG	1 cut(s)	83
AfaI	GTAC	4 cut(s)	245, 353, 1100, 1655
AfiI	CCNNNNNNNGG	6 cut(s)	83, 106, 772, 1064, 1112, 1453
AgsI	TTSAA	1 cut(s)	925
AjnI	CCWGG	1 cut(s)	390
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AluBI	AGCT	8 cut(s)	212, 305, 560, 754, 967, 1045, 1631, 1678
AluI	AGCT	8 cut(s)	212, 305, 560, 754, 967, 1045, 1631, 1678
Alw21I	GWGCWC	3 cut(s)	214, 958, 1525
Alw26I	GTCTC	3 cut(s)	435, 671, 1293
Alw44I	GTGCAC	1 cut(s)	954
AlwI	GGATC	5 cut(s)	826, 941, 1566, 1682, 1695
AlwNI	CAGNNNCTG	1 cut(s)	754
Aor13HI	TCCGGA	1 cut(s)	930
AoxI	GGCC	6 cut(s)	14, 134, 524, 659, 852, 1401
ApaLI	GTGCAC	1 cut(s)	954
ApeKI	GCWGC	6 cut(s)	146, 400, 566, 748, 751, 1508
ApoI	RAATTY	4 cut(s)	469, 769, 926, 1643
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	7 cut(s)	134, 200, 524, 659, 852, 1115, 1660
AsuC2I	CCSGG	3 cut(s)	312, 666, 1113
AsuHPI	GGTGA	7 cut(s)	170, 215, 380, 655, 884, 1765, 1766
AsuII	TTCGAA	1 cut(s)	590
AvaII	GGWCC	3 cut(s)	200, 1115, 1660
BaeGI	GKGCMC	1 cut(s)	958
BamHI	GGATCC	1 cut(s)	1687
BanI	GGYRCC	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	214
BbrPI	CACGTG	1 cut(s)	83
BbsI	GAAGAC	2 cut(s)	791, 1146
Bbv12I	GWGCWC	3 cut(s)	214, 958, 1525
BbvI	GCAGC	6 cut(s)	133, 412, 553, 760, 763, 1495
BccI	CCATC	4 cut(s)	125, 603, 1184, 1511
BciT130I	CCWGG	1 cut(s)	392
BciVI	GTATCC	2 cut(s)	1062, 1831
BclI	TGATCA	1 cut(s)	1567
BcnI	CCSGG	3 cut(s)	312, 666, 1113
BcoDI	GTCTC	3 cut(s)	435, 671, 1293
BfaI	CTAG	3 cut(s)	207, 435, 1119
BfmI	CTRYAG	2 cut(s)	329, 1546
BfoI	RGCGCY	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	1089
BfuI	GTATCC	2 cut(s)	1062, 1831
BglII	AGATCT	1 cut(s)	1060
BlpI	GCTNAGC	1 cut(s)	213
Bme1390I	CCNGG	4 cut(s)	312, 392, 666, 1113
Bme18I	GGWCC	3 cut(s)	200, 1115, 1660
BmgT120I	GGNCC	7 cut(s)	134, 200, 524, 659, 852, 1115, 1660
BmiI	GGNNCC	4 cut(s)	525, 639, 1662, 1689
BmrFI	CCNGG	4 cut(s)	312, 392, 666, 1113
BmsI	GCATC	3 cut(s)	226, 1203, 1400
BpiI	GAAGAC	2 cut(s)	791, 1146
BplI	GAGNNNNNCTC	2 cut(s)	841, 873
Bpu1102I	GCTNAGC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	590
BpuEI	CTTGAG	2 cut(s)	285, 886
BpuMI	CCSGG	3 cut(s)	312, 666, 1113
Bsa29I	ATCGAT	1 cut(s)	821
BsaAI	YACGTR	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	311, 546, 665
BsaWI	WCCGGW	1 cut(s)	930
Bsc4I	CCNNNNNNNGG	6 cut(s)	83, 106, 772, 1064, 1112, 1453
Bse118I	RCCGGY	4 cut(s)	12, 31, 142, 640
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	402
BseAI	TCCGGA	1 cut(s)	930
BseBI	CCWGG	1 cut(s)	392
BseCI	ATCGAT	1 cut(s)	821
BseDI	CCNNGG	3 cut(s)	311, 546, 665
BseGI	GGATG	3 cut(s)	217, 556, 1391
BseLI	CCNNNNNNNGG	6 cut(s)	83, 106, 772, 1064, 1112, 1453
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	3 cut(s)	227, 392, 1105
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	7 cut(s)	252, 288, 297, 706, 749, 1098, 1251
BseSI	GKGCMC	1 cut(s)	958
BseXI	GCAGC	6 cut(s)	133, 412, 553, 760, 763, 1495
BseYI	CCCAGC	1 cut(s)	1627
BsgI	GTGCAG	1 cut(s)	1641
Bsh1236I	CGCG	1 cut(s)	1731
BshFI	GGCC	6 cut(s)	16, 136, 526, 661, 854, 1403
BshNI	GGYRCC	1 cut(s)	637
BshVI	ATCGAT	1 cut(s)	821
BsiHKAI	GWGCWC	3 cut(s)	214, 958, 1525
BsiSI	CCGG	9 cut(s)	13, 32, 143, 269, 311, 641, 665, 931, 1113
BslFI	GGGAC	3 cut(s)	748, 825, 1646
BslI	CCNNNNNNNGG	6 cut(s)	83, 106, 772, 1064, 1112, 1453
BsmAI	GTCTC	3 cut(s)	435, 671, 1293
BsmBI	CGTCTC	1 cut(s)	671
BsmFI	GGGAC	3 cut(s)	748, 825, 1646
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	6 cut(s)	16, 136, 526, 661, 854, 1403
Bsp119I	TTCGAA	1 cut(s)	590
Bsp1286I	GDGCHC	3 cut(s)	214, 958, 1525
Bsp13I	TCCGGA	1 cut(s)	930
Bsp1407I	TGTACA	1 cut(s)	1098
Bsp143I	GATC	8 cut(s)	818, 946, 991, 1060, 1558, 1567, 1687, 1768
Bsp1720I	GCTNAGC	1 cut(s)	213
Bsp68I	TCGCGA	1 cut(s)	1731
BspANI	GGCC	6 cut(s)	16, 136, 526, 661, 854, 1403
BspCNI	CTCAG	3 cut(s)	226, 391, 1104
BspDI	ATCGAT	1 cut(s)	821
BspEI	TCCGGA	1 cut(s)	930
BspFNI	CGCG	1 cut(s)	1731
BspHI	TCATGA	1 cut(s)	1570
BspLI	GGNNCC	4 cut(s)	525, 639, 1662, 1689
BspMI	ACCTGC	1 cut(s)	1089
BspPI	GGATC	5 cut(s)	826, 941, 1566, 1682, 1695
BspT104I	TTCGAA	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	637
BsrBI	CCGCTC	1 cut(s)	1483
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	4 cut(s)	12, 31, 142, 640
BsrGI	TGTACA	1 cut(s)	1098
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	4 cut(s)	12, 31, 142, 640
BssECI	CCNNGG	3 cut(s)	311, 546, 665
BssMI	GATC	8 cut(s)	818, 946, 991, 1060, 1558, 1567, 1687, 1768
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	1287
Bst6I	CTCTTC	3 cut(s)	280, 681, 701
BstAPI	GCANNNNNTGC	1 cut(s)	1814
BstAUI	TGTACA	1 cut(s)	1098
BstBAI	YACGTR	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	144, 1405
BstDEI	CTNAG	4 cut(s)	213, 378, 1091, 1265
BstF5I	GGATG	3 cut(s)	217, 556, 1391
BstFNI	CGCG	1 cut(s)	1731
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	8 cut(s)	821, 949, 994, 1063, 1561, 1570, 1690, 1771
BstMAI	GTCTC	3 cut(s)	435, 671, 1293
BstMBI	GATC	8 cut(s)	818, 946, 991, 1060, 1558, 1567, 1687, 1768
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	4 cut(s)	310, 390, 664, 1111
BstSFI	CTRYAG	2 cut(s)	329, 1546
BstSLI	GKGCMC	1 cut(s)	958
BstUI	CGCG	1 cut(s)	1731
BstV1I	GCAGC	6 cut(s)	133, 412, 553, 760, 763, 1495
BstV2I	GAAGAC	2 cut(s)	791, 1146
BstX2I	RGATCY	3 cut(s)	946, 1060, 1687
BstXI	CCANNNNNNTGG	1 cut(s)	553
BstYI	RGATCY	3 cut(s)	946, 1060, 1687
Bsu15I	ATCGAT	1 cut(s)	821
BsuI	GTATCC	2 cut(s)	1062, 1831
BsuRI	GGCC	6 cut(s)	16, 136, 526, 661, 854, 1403
BsuTUI	ATCGAT	1 cut(s)	821
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	3 cut(s)	217, 556, 1391
BtsI	GCAGTG	2 cut(s)	1176, 1527
BtsIMutI	CAGTG	3 cut(s)	1099, 1176, 1527
BtuMI	TCGCGA	1 cut(s)	1731
BveI	ACCTGC	1 cut(s)	1089
Cac8I	GCNNGC	2 cut(s)	144, 1405
CaiI	CAGNNNCTG	1 cut(s)	754
CciI	TCATGA	1 cut(s)	1570
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	4 cut(s)	12, 31, 142, 640
Cfr13I	GGNCC	7 cut(s)	134, 200, 524, 659, 852, 1115, 1660
ClaI	ATCGAT	1 cut(s)	821
CseI	GACGC	1 cut(s)	1344
Csp6I	GTAC	4 cut(s)	244, 352, 1099, 1654
CspCI	CAANNNNNGTGG	2 cut(s)	1765, 1800
CviQI	GTAC	4 cut(s)	244, 352, 1099, 1654
DdeI	CTNAG	4 cut(s)	213, 378, 1091, 1265
DpnI	GATC	8 cut(s)	820, 948, 993, 1062, 1560, 1569, 1689, 1770
DpnII	GATC	8 cut(s)	818, 946, 991, 1060, 1558, 1567, 1687, 1768
DrdI	GACNNNNNNGTC	1 cut(s)	1499
DseDI	GACNNNNNNGTC	1 cut(s)	1499
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	3 cut(s)	280, 681, 701
EarI	CTCTTC	3 cut(s)	280, 681, 701
EciI	GGCGGA	2 cut(s)	30, 255
Ecl136II	GAGCTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	546
Eco147I	AGGCCT	1 cut(s)	1403
Eco24I	GRGCYC	1 cut(s)	214
Eco47I	GGWCC	3 cut(s)	200, 1115, 1660
Eco53kI	GAGCTC	1 cut(s)	212
Eco57I	CTGAAG	2 cut(s)	776, 1725
Eco72I	CACGTG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	546
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	546
Esp3I	CGTCTC	1 cut(s)	671
FaqI	GGGAC	3 cut(s)	748, 825, 1646
FauI	CCCGC	6 cut(s)	30, 255, 468, 495, 567, 1311
FauNDI	CATATG	2 cut(s)	792, 1693
FbaI	TGATCA	1 cut(s)	1567
FokI	GGATG	3 cut(s)	204, 563, 1378
FriOI	GRGCYC	1 cut(s)	214
FspBI	CTAG	3 cut(s)	207, 435, 1119
GlaI	GCGC	1 cut(s)	72
GsaI	CCCAGC	1 cut(s)	1631
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	6 cut(s)	16, 136, 526, 661, 854, 1403
HapII	CCGG	9 cut(s)	13, 32, 143, 269, 311, 641, 665, 931, 1113
HgaI	GACGC	1 cut(s)	1344
HhaI	GCGC	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HindIII	AAGCTT	1 cut(s)	1043
HinfI	GANTC	8 cut(s)	55, 272, 604, 761, 1274, 1535, 1583, 1700
HpaII	CCGG	9 cut(s)	13, 32, 143, 269, 311, 641, 665, 931, 1113
HphI	GGTGA	7 cut(s)	170, 215, 380, 655, 884, 1765, 1766
Hpy166II	GTNNAC	2 cut(s)	956, 1099
Hpy188I	TCNGA	4 cut(s)	1199, 1540, 1567, 1705
Hpy188III	TCNNGA	8 cut(s)	834, 865, 931, 944, 1076, 1571, 1637, 1730
Hpy8I	GTNNAC	2 cut(s)	956, 1099
HpyAV	CCTTC	5 cut(s)	162, 751, 802, 1321, 1674
HpyCH4III	ACNGT	1 cut(s)	1287
HpyCH4IV	ACGT	2 cut(s)	82, 1810
HpyF3I	CTNAG	4 cut(s)	213, 378, 1091, 1265
HpySE526I	ACGT	2 cut(s)	82, 1810
HspAI	GCGC	1 cut(s)	71
Kpn2I	TCCGGA	1 cut(s)	930
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	1567
Kzo9I	GATC	8 cut(s)	818, 946, 991, 1060, 1558, 1567, 1687, 1768
LmnI	GCTCC	4 cut(s)	154, 310, 557, 1528
Lsp1109I	GCAGC	6 cut(s)	133, 412, 553, 760, 763, 1495
LweI	GCATC	3 cut(s)	226, 1203, 1400
MaeI	CTAG	3 cut(s)	207, 435, 1119
MaeII	ACGT	2 cut(s)	82, 1810
MaeIII	GTNAC	5 cut(s)	386, 831, 1171, 1612, 1754
MalI	GATC	8 cut(s)	820, 948, 993, 1062, 1560, 1569, 1689, 1770
MbiI	CCGCTC	1 cut(s)	1483
MboI	GATC	8 cut(s)	818, 946, 991, 1060, 1558, 1567, 1687, 1768
MflI	RGATCY	3 cut(s)	946, 1060, 1687
MhlI	GDGCHC	3 cut(s)	214, 958, 1525
MlyI	GAGTC	2 cut(s)	266, 770
MmeI	TCCRAC	1 cut(s)	1536
MroI	TCCGGA	1 cut(s)	930
MroNI	GCCGGC	1 cut(s)	142
MseI	TTAA	3 cut(s)	1182, 1242, 1356
MslI	CAYNNNNRTG	2 cut(s)	913, 974
MspA1I	CMGCKG	1 cut(s)	754
MspI	CCGG	9 cut(s)	13, 32, 143, 269, 311, 641, 665, 931, 1113
MspR9I	CCNGG	4 cut(s)	312, 392, 666, 1113
Mva1269I	GAATGC	1 cut(s)	586
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	1 cut(s)	1731
NaeI	GCCGGC	1 cut(s)	144
NciI	CCSGG	3 cut(s)	312, 666, 1113
NdeI	CATATG	2 cut(s)	792, 1693
NdeII	GATC	8 cut(s)	818, 946, 991, 1060, 1558, 1567, 1687, 1768
NgoMIV	GCCGGC	1 cut(s)	142
NlaIV	GGNNCC	4 cut(s)	525, 639, 1662, 1689
NmuCI	GTSAC	4 cut(s)	386, 831, 1171, 1754
NruI	TCGCGA	1 cut(s)	1731
NspI	RCATGY	1 cut(s)	325
NspV	TTCGAA	1 cut(s)	590
PagI	TCATGA	1 cut(s)	1570
PceI	AGGCCT	1 cut(s)	1403
PcsI	WCGNNNNNNNCGW	1 cut(s)	1016
PctI	GAATGC	1 cut(s)	586
PdiI	GCCGGC	1 cut(s)	144
PfeI	GAWTC	6 cut(s)	55, 604, 1274, 1535, 1583, 1700
PflMI	CCANNNNNTGG	1 cut(s)	1064
PleI	GAGTC	2 cut(s)	266, 769
PmaCI	CACGTG	1 cut(s)	83
PmlI	CACGTG	1 cut(s)	83
PpsI	GAGTC	2 cut(s)	266, 769
Ppu21I	YACGTR	1 cut(s)	83
PsiI	TTATAA	2 cut(s)	114, 1608
Psp124BI	GAGCTC	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	390
PspCI	CACGTG	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	1627
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	4 cut(s)	525, 639, 1662, 1689
PspPI	GGNCC	7 cut(s)	134, 200, 524, 659, 852, 1115, 1660
PstNI	CAGNNNCTG	1 cut(s)	754
PsuI	RGATCY	3 cut(s)	946, 1060, 1687
PvuII	CAGCTG	1 cut(s)	754
RruI	TCGCGA	1 cut(s)	1731
RsaI	GTAC	4 cut(s)	245, 353, 1100, 1655
RsaNI	GTAC	4 cut(s)	244, 352, 1099, 1654
RseI	CAYNNNNRTG	2 cut(s)	913, 974
SacI	GAGCTC	1 cut(s)	214
SaqAI	TTAA	3 cut(s)	1182, 1242, 1356
Sau3AI	GATC	8 cut(s)	818, 946, 991, 1060, 1558, 1567, 1687, 1768
Sau96I	GGNCC	7 cut(s)	134, 200, 524, 659, 852, 1115, 1660
SchI	GAGTC	2 cut(s)	266, 770
ScrFI	CCNGG	4 cut(s)	312, 392, 666, 1113
SduI	GDGCHC	3 cut(s)	214, 958, 1525
SfaNI	GCATC	3 cut(s)	226, 1203, 1400
SfcI	CTRYAG	2 cut(s)	329, 1546
SfuI	TTCGAA	1 cut(s)	590
SinI	GGWCC	3 cut(s)	200, 1115, 1660
SmiMI	CAYNNNNRTG	2 cut(s)	913, 974
SmlI	CTYRAG	2 cut(s)	300, 865
SmoI	CTYRAG	2 cut(s)	300, 865
SseBI	AGGCCT	1 cut(s)	1403
SspMI	CTAG	3 cut(s)	207, 435, 1119
SstI	GAGCTC	1 cut(s)	214
StuI	AGGCCT	1 cut(s)	1403
StyD4I	CCNGG	4 cut(s)	310, 390, 664, 1111
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	1 cut(s)	1287
TaiI	ACGT	2 cut(s)	85, 1813
TaqI	TCGA	3 cut(s)	516, 590, 821
TatI	WGTACW	2 cut(s)	351, 1098
TfiI	GAWTC	6 cut(s)	55, 604, 1274, 1535, 1583, 1700
Tru1I	TTAA	3 cut(s)	1182, 1242, 1356
Tru9I	TTAA	3 cut(s)	1182, 1242, 1356
TscAI	CASTG	3 cut(s)	1099, 1176, 1534
TseFI	GTSAC	4 cut(s)	386, 831, 1171, 1754
TseI	GCWGC	6 cut(s)	146, 400, 566, 748, 751, 1508
Tsp45I	GTSAC	4 cut(s)	386, 831, 1171, 1754
TspGWI	ACGGA	3 cut(s)	621, 695, 1232
TspRI	CASTG	3 cut(s)	1099, 1176, 1534
Van91I	CCANNNNNTGG	1 cut(s)	1064
VneI	GTGCAC	1 cut(s)	954
VpaK11BI	GGWCC	3 cut(s)	200, 1115, 1660
XapI	RAATTY	4 cut(s)	469, 769, 926, 1643
XceI	RCATGY	1 cut(s)	325
XspI	CTAG	3 cut(s)	207, 435, 1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.