Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008604

Physical Location & Seq

Genomic Coordinates Forward (+)

57859823 .. 57865875

Gene Structure 6053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019875

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGGCTTCATACAGGCCATTCCCGCCTCAACCGGCGTTTCCGCCACCGCCGCCGAATCAAAACCCCGTAGCGCCACCGCCACGTGGCAATCAGTATAACCAGAATTGGGGTTATAATGCCGGTGGCGGCGGCGGCGATGGGGCTGTGCCGCCTGCTCCTTCTTCATACCCCCAAAACTACATTCACCACCCTCATAGTAATTATGGTCCTCCTAGAGCTCAGCACCCTCACCCACCACCGCAATACTCCTACCCGCCGCCGCCGCCTCCTCCGCCGGACTCCTCATACCCACCTCCGCCGCCTCCTCAAGCTCCTCCAGGGAAAAATATGCCCCTACAGCCTCCACAAGCCCCAATGTACTACCAGTCTAACTCTCAATATGCACAGTATAGTCACCAGGCAATGCAGCCACCGCCGCCTCCGCCGCCGCCGTTGTCTCCTAGTTCGTCTATTCCACCACCACCCCCGCCTCCGAATTCTCCACCGCCTCCCCCGCCGCCGCAGAGCAGGGAGAGTGGTTTCGATAAGGGGCCAGATTACAAAGGGGCTTCCAAGGATGTGGGAGCTTCTGCTGCCAAGCGGGAACATGGGCATGCGAACCATCATGGGATTCCCCATAAACACAAGCCCCCTGTTCCATTGGTGCCGGTGAAGAAGTCCAATGGGCCGCCGGGGAGGGTGGAGACAGAGGAAGAGAGGAGGTTGAGGAAGAAGAGGGAGTTTGAGAAGCAAAGACAAGAGGAGAAGCATAGGCAGCAGCTGAAGGATTCCCAAAATTCGGTTTTGCAGAAGACACATATGTTGTCTTCCGGGAAGGGGCATGGATCGATCGCTGGGTCACGAATGGGGGAAAGGAGGGCCACTCCATTCTTGAGTGGTGAGAGGGCTGAAAATAGGCTAAAGAAGCCAACAACATTTGTGTGCAAGTTGAAATTCCGGAACGAACTTCCAGATCCAAGTGCACAACCCAAGCTCATGTCCATGAAGAAAGACAAAGATCAATATACAAAATACACGATTACATCGTTAGAGAAAAATTACAAGCCCAAGCTTTTTGTTGAGCCGGATCTTGGGATACCCCTTGACCTGCTTGACCTCAGTGTGTACAATCCTCCTCCCGGTCCTAGACCACCACTTGCACCAGAAGATGAGGAATTATTGCGTGATGATGTAGCAGTGACCCCTGTTAAAAAAGATGGCATCAGAAGAAAAGAGCGACCTACGGATAAAGGAGTTGCATGGCTGGTTAAAACACAATATATTTCTCCTCTTAGCATGGATTCAGCAAAACAGTCTCTAACAGAAAAACAAGCAAAAGAACTGCGGGAAATGAAGGGAGGACGCAATCTTTTGGACAACCTTAATGATAGGGAGAGGCAGATAAAGGAAATTGAGGCATCCTTTGAGGCCTGCAAGTCGCGCCCTGTTCATGCAACCAATAAAAATCTATACCCTGTCGAGGTTCTACCTCTTTTGCCTGATTTTGAGCGGTATGATGACCAATTCGTCCTTGCTGCATTTGATGGTGCTCCCACTGCTGATTCAGAAATCTACAGCAAGTTGGATCAGTCTGATCATGATGTCTGTGAATCAAGGGCAATTATGAAAAGTTATAAGGTAACAGGTGCAGACCCAGCTAATCCAGACAAATTTTTGGCGTACATGGTCCCTTCTCCAAACGAGCTATCAAAGGATCCATATGATGAATCTGAAGATGTTTCATATTCTTGGGTTCGCGAGTATCAGTATGATGTAAGAGGTGACGATGTTGATGATCTCACCACATACCTTGTATCATTTGATGAAGATGAAGCACGCTATGCGCCTCTTCCGGCAAAGCTGGTTTTGAGGAAAAAAAGGGCCAAAGAGGGAAGATCCACTGATGAGGTTGAACATTTTCCTGCACCTTCAAGAGTGACTGTCAGGCGGAGGTCAACTGTTTCTGCAATTGAACTAAAGGATGCAGGGGATTATTCGAGGGGAGCTCTATCAAATTCGAAAAGAAGAGGGTTTGATAATGAAGATGCCCTTGAAAGACCACAGAAGAGGGTACGACACCAAGATGTTGATGAATATAGCGGTGGCGACGATGATTTATCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009909 GO:0009910 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0019538 GO:0030880 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

Paf1

Protein Analysis

702

Amino Acids

78.39

Weight (kDa)

8.3

Isoelectric Point (pI)

65.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Paf1	PF03985	306 - 644	7.9e-57	Paf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79730
fragaria_vesca	FvH4_6g32381 FvH4_6g32381
malus_domestica	MD09G1202900.v1.1 MD17G1184000.v1.1
prunus_persica	Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.3G059100_v2.0.a1
pyrus_communis	pycom17g19340
rosa_chinensis	RchiOBHm_Chr2g0140531
rosa_laevigata	RLG00000019875
rosa_multiflora	Rmu_sc0002490.1_g000024
rosa_roxburghii	Rroxscaffold_153G00436660 Rroxscaffold_2G00104720
rosa_rugosa	Rorug02G0363400 Rorug02G0363500
rosa_samantha	Rh2AG414300 Rh2BG424200 Rh2CG400700 Rh2DG434200
rosa_wichuraiana	Rw2G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	114, 1614
AasI	GACNNNNNNGTC	1 cut(s)	1505
Acc36I	ACCTGC	1 cut(s)	1095
AccB1I	GGYRCC	1 cut(s)	643
AccBSI	CCGCTC	1 cut(s)	1489
AccII	CGCG	2 cut(s)	1420, 1737
AccIII	TCCGGA	1 cut(s)	936
AclWI	GGATC	7 cut(s)	832, 947, 1074, 1572, 1688, 1701, 1869
AcsI	RAATTY	5 cut(s)	475, 775, 932, 1649, 1993
AcuI	CTGAAG	2 cut(s)	782, 1731
AcvI	CACGTG	1 cut(s)	83
AfaI	GTAC	4 cut(s)	359, 1106, 1661, 2052
AfiI	CCNNNNNNNGG	7 cut(s)	83, 106, 778, 816, 1070, 1118, 1459
AgsI	TTSAA	5 cut(s)	931, 1892, 1911, 1952, 2033
AjnI	CCWGG	2 cut(s)	316, 396
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
Alw21I	GWGCWC	4 cut(s)	220, 964, 1531, 1987
Alw26I	GTCTC	3 cut(s)	441, 677, 1299
Alw44I	GTGCAC	1 cut(s)	960
AlwI	GGATC	7 cut(s)	832, 947, 1074, 1572, 1688, 1701, 1869
AlwNI	CAGNNNCTG	1 cut(s)	760
Aor13HI	TCCGGA	1 cut(s)	936
AoxI	GGCC	6 cut(s)	14, 530, 665, 858, 1407, 1860
ApaLI	GTGCAC	1 cut(s)	960
ApeKI	GCWGC	5 cut(s)	406, 572, 754, 757, 1514
ApoI	RAATTY	5 cut(s)	475, 775, 932, 1649, 1993
Asp700I	GAANNNNTTC	1 cut(s)	1896
AspLEI	GCGC	3 cut(s)	73, 1422, 1825
AspS9I	GGNCC	7 cut(s)	206, 530, 665, 858, 1121, 1666, 1860
AsuC2I	CCSGG	3 cut(s)	672, 811, 1119
AsuHPI	GGTGA	7 cut(s)	176, 221, 386, 661, 890, 1771, 1772
AsuII	TTCGAA	1 cut(s)	1997
AvaII	GGWCC	3 cut(s)	206, 1121, 1666
BaeGI	GKGCMC	1 cut(s)	964
BamHI	GGATCC	1 cut(s)	1693
BanI	GGYRCC	1 cut(s)	643
BanII	GRGCYC	2 cut(s)	220, 1987
BbrPI	CACGTG	1 cut(s)	83
BbsI	GAAGAC	2 cut(s)	797, 798
Bbv12I	GWGCWC	4 cut(s)	220, 964, 1531, 1987
BbvI	GCAGC	5 cut(s)	418, 559, 766, 769, 1501
BccI	CCATC	4 cut(s)	131, 609, 1190, 1517
BceAI	ACGGC	1 cut(s)	415
BciT130I	CCWGG	2 cut(s)	318, 398
BciVI	GTATCC	1 cut(s)	1068
BclI	TGATCA	1 cut(s)	1573
BcnI	CCSGG	3 cut(s)	672, 811, 1119
BcoDI	GTCTC	3 cut(s)	441, 677, 1299
BfaI	CTAG	3 cut(s)	213, 441, 1125
BfmI	CTRYAG	2 cut(s)	335, 1552
BfoI	RGCGCY	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	1095
BfuI	GTATCC	1 cut(s)	1068
BlpI	GCTNAGC	1 cut(s)	219
Bme1390I	CCNGG	5 cut(s)	318, 398, 672, 811, 1119
Bme18I	GGWCC	3 cut(s)	206, 1121, 1666
BmgT120I	GGNCC	7 cut(s)	206, 530, 665, 858, 1121, 1666, 1860
BmiI	GGNNCC	4 cut(s)	531, 645, 1668, 1695
BmrFI	CCNGG	5 cut(s)	318, 398, 672, 811, 1119
BmsI	GCATC	4 cut(s)	1209, 1406, 1951, 2014
BpiI	GAAGAC	2 cut(s)	797, 798
BplI	GAGNNNNNCTC	4 cut(s)	847, 879, 1969, 2001
BpmI	CTGGAG	1 cut(s)	300
Bpu1102I	GCTNAGC	1 cut(s)	219
Bpu14I	TTCGAA	1 cut(s)	1997
BpuEI	CTTGAG	2 cut(s)	291, 892
BpuMI	CCSGG	3 cut(s)	672, 811, 1119
Bsa29I	ATCGAT	1 cut(s)	827
BsaAI	YACGTR	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	317, 552, 671
BsaWI	WCCGGW	1 cut(s)	936
Bsc4I	CCNNNNNNNGG	7 cut(s)	83, 106, 778, 816, 1070, 1118, 1459
Bse118I	RCCGGY	3 cut(s)	31, 119, 646
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	408
BseAI	TCCGGA	1 cut(s)	936
BseBI	CCWGG	2 cut(s)	318, 398
BseCI	ATCGAT	1 cut(s)	827
BseDI	CCNNGG	3 cut(s)	317, 552, 671
BseGI	GGATG	3 cut(s)	562, 1397, 1966
BseLI	CCNNNNNNNGG	7 cut(s)	83, 106, 778, 816, 1070, 1118, 1459
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	2 cut(s)	233, 1111
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	8 cut(s)	258, 271, 294, 303, 712, 755, 1104, 1257
BseSI	GKGCMC	1 cut(s)	964
BseXI	GCAGC	5 cut(s)	418, 559, 766, 769, 1501
BseYI	CCCAGC	2 cut(s)	833, 1633
BsgI	GTGCAG	2 cut(s)	1647, 1887
Bsh1236I	CGCG	2 cut(s)	1420, 1737
Bsh1285I	CGRYCG	1 cut(s)	831
BshFI	GGCC	6 cut(s)	16, 532, 667, 860, 1409, 1862
BshNI	GGYRCC	1 cut(s)	643
BshVI	ATCGAT	1 cut(s)	827
BsiEI	CGRYCG	1 cut(s)	831
BsiHKAI	GWGCWC	4 cut(s)	220, 964, 1531, 1987
BslFI	GGGAC	1 cut(s)	1652
BslI	CCNNNNNNNGG	7 cut(s)	83, 106, 778, 816, 1070, 1118, 1459
BsmAI	GTCTC	3 cut(s)	441, 677, 1299
BsmFI	GGGAC	1 cut(s)	1652
BsnI	GGCC	6 cut(s)	16, 532, 667, 860, 1409, 1862
Bsp119I	TTCGAA	1 cut(s)	1997
Bsp1286I	GDGCHC	4 cut(s)	220, 964, 1531, 1987
Bsp13I	TCCGGA	1 cut(s)	936
Bsp1407I	TGTACA	1 cut(s)	1104
Bsp1720I	GCTNAGC	1 cut(s)	219
Bsp68I	TCGCGA	1 cut(s)	1737
BspANI	GGCC	6 cut(s)	16, 532, 667, 860, 1409, 1862
BspCNI	CTCAG	2 cut(s)	232, 1110
BspDI	ATCGAT	1 cut(s)	827
BspEI	TCCGGA	1 cut(s)	936
BspFNI	CGCG	2 cut(s)	1420, 1737
BspHI	TCATGA	1 cut(s)	1576
BspLI	GGNNCC	4 cut(s)	531, 645, 1668, 1695
BspMI	ACCTGC	1 cut(s)	1095
BspPI	GGATC	7 cut(s)	832, 947, 1074, 1572, 1688, 1701, 1869
BspT104I	TTCGAA	1 cut(s)	1997
BspT107I	GGYRCC	1 cut(s)	643
BsrBI	CCGCTC	1 cut(s)	1489
BsrDI	GCAATG	1 cut(s)	408
BsrFI	RCCGGY	3 cut(s)	31, 119, 646
BsrGI	TGTACA	1 cut(s)	1104
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	3 cut(s)	31, 119, 646
BssECI	CCNNGG	3 cut(s)	317, 552, 671
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	2 cut(s)	318, 398
Bst4CI	ACNGT	4 cut(s)	387, 1293, 1921, 1939
Bst6I	CTCTTC	5 cut(s)	687, 707, 1833, 1999, 2039
BstAPI	GCANNNNNTGC	1 cut(s)	1820
BstAUI	TGTACA	1 cut(s)	1104
BstBAI	YACGTR	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	1997
BstC8I	GCNNGC	4 cut(s)	153, 594, 1411, 1816
BstDEI	CTNAG	3 cut(s)	219, 1097, 1271
BstF5I	GGATG	3 cut(s)	562, 1397, 1966
BstFNI	CGCG	2 cut(s)	1420, 1737
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	3 cut(s)	73, 1422, 1825
BstMAI	GTCTC	3 cut(s)	441, 677, 1299
BstMCI	CGRYCG	1 cut(s)	831
BstNI	CCWGG	2 cut(s)	318, 398
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	5 cut(s)	316, 396, 670, 809, 1117
BstSFI	CTRYAG	2 cut(s)	335, 1552
BstSLI	GKGCMC	1 cut(s)	964
BstUI	CGCG	2 cut(s)	1420, 1737
BstV1I	GCAGC	5 cut(s)	418, 559, 766, 769, 1501
BstV2I	GAAGAC	2 cut(s)	797, 798
BstX2I	RGATCY	4 cut(s)	952, 1066, 1693, 1874
BstXI	CCANNNNNNTGG	1 cut(s)	559
BstYI	RGATCY	4 cut(s)	952, 1066, 1693, 1874
Bsu15I	ATCGAT	1 cut(s)	827
BsuI	GTATCC	1 cut(s)	1068
BsuRI	GGCC	6 cut(s)	16, 532, 667, 860, 1409, 1862
BsuTUI	ATCGAT	1 cut(s)	827
BtgZI	GCGATG	1 cut(s)	150
BtsCI	GGATG	3 cut(s)	562, 1397, 1966
BtsI	GCAGTG	2 cut(s)	1182, 1533
BtsIMutI	CAGTG	4 cut(s)	1105, 1182, 1533, 1878
BtuMI	TCGCGA	1 cut(s)	1737
BveI	ACCTGC	1 cut(s)	1095
Cac8I	GCNNGC	4 cut(s)	153, 594, 1411, 1816
CaiI	CAGNNNCTG	1 cut(s)	760
CciI	TCATGA	1 cut(s)	1576
CfoI	GCGC	3 cut(s)	73, 1422, 1825
Cfr10I	RCCGGY	3 cut(s)	31, 119, 646
Cfr13I	GGNCC	7 cut(s)	206, 530, 665, 858, 1121, 1666, 1860
ClaI	ATCGAT	1 cut(s)	827
CseI	GACGC	1 cut(s)	1350
Csp6I	GTAC	4 cut(s)	358, 1105, 1660, 2051
CspCI	CAANNNNNGTGG	2 cut(s)	1771, 1806
CviQI	GTAC	4 cut(s)	358, 1105, 1660, 2051
DdeI	CTNAG	3 cut(s)	219, 1097, 1271
DrdI	GACNNNNNNGTC	1 cut(s)	1505
DseDI	GACNNNNNNGTC	1 cut(s)	1505
Eam1104I	CTCTTC	5 cut(s)	687, 707, 1833, 1999, 2039
EarI	CTCTTC	5 cut(s)	687, 707, 1833, 1999, 2039
EciI	GGCGGA	5 cut(s)	30, 261, 285, 411, 1942
Ecl136II	GAGCTC	2 cut(s)	218, 1985
Eco130I	CCWWGG	1 cut(s)	552
Eco147I	AGGCCT	1 cut(s)	1409
Eco24I	GRGCYC	2 cut(s)	220, 1987
Eco47I	GGWCC	3 cut(s)	206, 1121, 1666
Eco53kI	GAGCTC	2 cut(s)	218, 1985
Eco57I	CTGAAG	2 cut(s)	782, 1731
Eco72I	CACGTG	1 cut(s)	83
EcoICRI	GAGCTC	2 cut(s)	218, 1985
EcoRI	GAATTC	1 cut(s)	475
EcoRII	CCWGG	2 cut(s)	316, 396
EcoT14I	CCWWGG	1 cut(s)	552
EcoT38I	GRGCYC	2 cut(s)	220, 1987
ErhI	CCWWGG	1 cut(s)	552
FalI	AAGNNNNNCTT	2 cut(s)	2013, 2045
FaqI	GGGAC	1 cut(s)	1652
FauI	CCCGC	6 cut(s)	30, 261, 474, 501, 573, 1317
FauNDI	CATATG	2 cut(s)	798, 1699
FbaI	TGATCA	1 cut(s)	1573
FokI	GGATG	3 cut(s)	569, 1384, 1973
FriOI	GRGCYC	2 cut(s)	220, 1987
FspBI	CTAG	3 cut(s)	213, 441, 1125
GlaI	GCGC	3 cut(s)	72, 1421, 1824
GsaI	CCCAGC	2 cut(s)	837, 1637
GsuI	CTGGAG	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	6 cut(s)	16, 532, 667, 860, 1409, 1862
HgaI	GACGC	1 cut(s)	1350
HhaI	GCGC	3 cut(s)	73, 1422, 1825
Hin6I	GCGC	3 cut(s)	71, 1420, 1823
HinP1I	GCGC	3 cut(s)	71, 1420, 1823
HincII	GTYRAC	1 cut(s)	1935
HindII	GTYRAC	1 cut(s)	1935
HindIII	AAGCTT	1 cut(s)	1049
HinfI	GANTC	8 cut(s)	55, 278, 610, 767, 1280, 1541, 1589, 1706
HphI	GGTGA	7 cut(s)	176, 221, 386, 661, 890, 1771, 1772
Hpy166II	GTNNAC	3 cut(s)	962, 1105, 1935
Hpy188I	TCNGA	6 cut(s)	474, 1205, 1546, 1573, 1711, 2101
Hpy188III	TCNNGA	8 cut(s)	840, 871, 937, 950, 1577, 1643, 1736, 1911
Hpy8I	GTNNAC	3 cut(s)	962, 1105, 1935
Hpy99I	CGWCG	1 cut(s)	2090
HpyAV	CCTTC	6 cut(s)	168, 757, 808, 1327, 1680, 1917
HpyCH4III	ACNGT	4 cut(s)	387, 1293, 1921, 1939
HpyCH4IV	ACGT	1 cut(s)	82
HpyF3I	CTNAG	3 cut(s)	219, 1097, 1271
HpySE526I	ACGT	1 cut(s)	82
HspAI	GCGC	3 cut(s)	71, 1420, 1823
Kpn2I	TCCGGA	1 cut(s)	936
Ksp22I	TGATCA	1 cut(s)	1573
LmnI	GCTCC	5 cut(s)	160, 316, 563, 1534, 1982
Lsp1109I	GCAGC	5 cut(s)	418, 559, 766, 769, 1501
LweI	GCATC	4 cut(s)	1209, 1406, 1951, 2014
MaeI	CTAG	3 cut(s)	213, 441, 1125
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	6 cut(s)	392, 837, 1177, 1618, 1760, 1915
MbiI	CCGCTC	1 cut(s)	1489
MfeI	CAATTG	1 cut(s)	1947
MflI	RGATCY	4 cut(s)	952, 1066, 1693, 1874
MhlI	GDGCHC	4 cut(s)	220, 964, 1531, 1987
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	1542
MroI	TCCGGA	1 cut(s)	936
MroXI	GAANNNNTTC	1 cut(s)	1896
MseI	TTAA	3 cut(s)	1188, 1248, 1362
MslI	CAYNNNNRTG	4 cut(s)	591, 919, 980, 2061
MspA1I	CMGCKG	1 cut(s)	760
MspR9I	CCNGG	5 cut(s)	318, 398, 672, 811, 1119
MunI	CAATTG	1 cut(s)	1947
MvaI	CCWGG	2 cut(s)	318, 398
MvnI	CGCG	2 cut(s)	1420, 1737
NciI	CCSGG	3 cut(s)	672, 811, 1119
NdeI	CATATG	2 cut(s)	798, 1699
NlaIV	GGNNCC	4 cut(s)	531, 645, 1668, 1695
NmuCI	GTSAC	5 cut(s)	392, 837, 1177, 1760, 1915
NruI	TCGCGA	1 cut(s)	1737
NspI	RCATGY	1 cut(s)	596
NspV	TTCGAA	1 cut(s)	1997
PaeI	GCATGC	1 cut(s)	596
PagI	TCATGA	1 cut(s)	1576
PceI	AGGCCT	1 cut(s)	1409
PcsI	WCGNNNNNNNCGW	1 cut(s)	1022
PdmI	GAANNNNTTC	1 cut(s)	1896
PfeI	GAWTC	7 cut(s)	55, 610, 767, 1280, 1541, 1589, 1706
PfoI	TCCNGGA	1 cut(s)	809
Ple19I	CGATCG	1 cut(s)	831
PleI	GAGTC	1 cut(s)	272
PmaCI	CACGTG	1 cut(s)	83
PmlI	CACGTG	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	83
PsiI	TTATAA	2 cut(s)	114, 1614
Psp124BI	GAGCTC	2 cut(s)	220, 1987
Psp6I	CCWGG	2 cut(s)	316, 396
PspCI	CACGTG	1 cut(s)	83
PspFI	CCCAGC	2 cut(s)	833, 1633
PspGI	CCWGG	2 cut(s)	316, 396
PspN4I	GGNNCC	4 cut(s)	531, 645, 1668, 1695
PspPI	GGNCC	7 cut(s)	206, 530, 665, 858, 1121, 1666, 1860
PstNI	CAGNNNCTG	1 cut(s)	760
PsuI	RGATCY	4 cut(s)	952, 1066, 1693, 1874
PvuI	CGATCG	1 cut(s)	831
PvuII	CAGCTG	1 cut(s)	760
RruI	TCGCGA	1 cut(s)	1737
RsaI	GTAC	4 cut(s)	359, 1106, 1661, 2052
RsaNI	GTAC	4 cut(s)	358, 1105, 1660, 2051
RseI	CAYNNNNRTG	4 cut(s)	591, 919, 980, 2061
SacI	GAGCTC	2 cut(s)	220, 1987
SaqAI	TTAA	3 cut(s)	1188, 1248, 1362
Sau96I	GGNCC	7 cut(s)	206, 530, 665, 858, 1121, 1666, 1860
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	5 cut(s)	318, 398, 672, 811, 1119
SduI	GDGCHC	4 cut(s)	220, 964, 1531, 1987
SfaNI	GCATC	4 cut(s)	1209, 1406, 1951, 2014
SfcI	CTRYAG	2 cut(s)	335, 1552
SfuI	TTCGAA	1 cut(s)	1997
SinI	GGWCC	3 cut(s)	206, 1121, 1666
SmiMI	CAYNNNNRTG	4 cut(s)	591, 919, 980, 2061
SmlI	CTYRAG	2 cut(s)	306, 871
SmoI	CTYRAG	2 cut(s)	306, 871
SphI	GCATGC	1 cut(s)	596
SseBI	AGGCCT	1 cut(s)	1409
SspMI	CTAG	3 cut(s)	213, 441, 1125
SstI	GAGCTC	2 cut(s)	220, 1987
StuI	AGGCCT	1 cut(s)	1409
StyD4I	CCNGG	5 cut(s)	316, 396, 670, 809, 1117
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	4 cut(s)	387, 1293, 1921, 1939
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	5 cut(s)	522, 827, 1458, 1976, 1997
TatI	WGTACW	2 cut(s)	357, 1104
TfiI	GAWTC	7 cut(s)	55, 610, 767, 1280, 1541, 1589, 1706
Tru1I	TTAA	3 cut(s)	1188, 1248, 1362
Tru9I	TTAA	3 cut(s)	1188, 1248, 1362
TscAI	CASTG	4 cut(s)	1105, 1182, 1540, 1885
TseFI	GTSAC	5 cut(s)	392, 837, 1177, 1760, 1915
TseI	GCWGC	5 cut(s)	406, 572, 754, 757, 1514
Tsp45I	GTSAC	5 cut(s)	392, 837, 1177, 1760, 1915
TspGWI	ACGGA	1 cut(s)	1238
TspRI	CASTG	4 cut(s)	1105, 1182, 1540, 1885
VneI	GTGCAC	1 cut(s)	960
VpaK11BI	GGWCC	3 cut(s)	206, 1121, 1666
XapI	RAATTY	5 cut(s)	475, 775, 932, 1649, 1993
XceI	RCATGY	1 cut(s)	596
XmnI	GAANNNNTTC	1 cut(s)	1896
XspI	CTAG	3 cut(s)	213, 441, 1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.