Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008604

Physical Location & Seq

Genomic Coordinates Reverse (-)

27994154 .. 27999928

Gene Structure 5775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1704 bp

ATGGTCCTCCCAGAGCTCAGCACCCTCACCCACCACCGCAATACTCGTACCCGCCGCCACCGCCTCCTCCGCCGGACTCTTCATACCCACCTCCACCGCCTCCTCAAGCTCCTCTGGGGAAAAATATGCCCCTGCAGCCTCCACAAGCCCCAATGTACTACCAGTCTAACTCTCAATATGCACAGTATAGTCACCAGGCAATGCAGCCACCGCCACCTCCGCCGCCGCCTTTGTCTCCTAGTTCGTCTATCCCACCGCCACCCCCGCCTCCGAATTCTCCACCGCCTCCCCCGCCGCCGCAGAGTAGGGGAGAGTGGTTTCGATAAGGGGCCAGATTACAAAGGGGCTTCCAAGGATGTGGGAGCCTCTGCTGCCAAGCGGGAACATGGGCATTCGAACCATCATGGGATTCCCCATAAACACAAGCCCCCTGTTCCGTTGGTGCCGGTGAAGAAGTCAAATGGTCCGCCGGGGAGAGTGGAGACAGAGGAAGAGAGGAGGTTGAGGAAGAAGAGGGAGTTTGAGAAGCAAAGACAAGAGGAGAAGCATAGGCAGCAGCTGAAGGAGTCCCAAAATTCGGTTTTGCAGAAGACACATATGTTGTCTTCCGGGAAGGGACATGGATCGATTGCAGGGTCACGAATGGGGGAAAGGAGGGGCCACTCCATTCTTGAGTGGTGGCAGACGCCTCTTCTGTTTGTATACCCACATGCTGGATGTGGGCGCAGATTCCGGAATGAACTTCCAGATCCAAGTGCACAACCCAAGCTCATGTCCATGAAGAAAGACAAAGATCAATATACAAAATACACGATTACATCATTAGAGAAAAATTACAAGCCCAAGCTTTTTGTTGAGCCAGATCTTGGGATACCTCTTGACCTGCTTGACCTCAGTGTGTACAATCCTCCTCCCGGTCCTAGACCACCACTTGCACCAGAAGATGAGGAATTATTGCGTGATGATGTAGCAGTGACCCCTGTTAAAAAAGATGGCATCAGAAGAAAAGAGCGACCTACGGATAAAGGAGTTGCATGGCTGGTTAAAACACAATATATTTCTCCTATTAGCATGGATTCAGCAAAACAGGTAGTTGTCTCTAACAGAAAAACAAGCAAAAGAACTGCGCGGGAAATGAAGGGAGGACGCAATCTTTTGGACAACCTTAATGATAGGTATGATGACCAATTCGTCCTTGCTGCATTTGATGGTGCTCCCACTGCTGATTCAGAAATCTACAGCAAGTTGGATCAGTCTGATCATGATGTCTGTGAATCAAGGCTATCAAAGGATCCATATGATGAATCAGAAGATGTTTCATATTCTTGGGTTCGCGAGTATCAGTATGATGTAAGAGGTGACGATGTTGATGATCTCACGACATACCTTGTATCATTTGATGAAGATGAAGCACGCTATGCGCCTCTTCCAGCAAAGCTTGTTTTGAGGAAAAAAAGGGCCAAAGAGGGAAGATCCACTGATGAGGTTGAACATTTTCCTGCACCTTCAAGAGTGACTGTCAGGCGGAGGTCAACTGTTTCTGCAATTGAACTAAAGGATGCAGGGGATTATTCGAGGGGAGCTCTATCAAATTCGAAAAGAAGAGGGTTTGATAATGAAGATGCCCTTGAAAGACCACAGAAGAGGGTACGACACCAAGATGTTGATGAATATAGTGGTGGTGACGATGATTTATCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009909 GO:0009910 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0019538 GO:0030880 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

Paf1

Protein Analysis

567

Amino Acids

65.32

Weight (kDa)

9.66

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Paf1	PF03985	243 - 373	7e-25	Paf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79730
fragaria_vesca	FvH4_6g32381 FvH4_6g32381
malus_domestica	MD09G1202900.v1.1 MD17G1184000.v1.1
prunus_persica	Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.3G059100_v2.0.a1
pyrus_communis	pycom17g19340
rosa_chinensis	RchiOBHm_Chr2g0140531
rosa_laevigata	RLG00000019875
rosa_multiflora	Rmu_sc0002490.1_g000024
rosa_roxburghii	Rroxscaffold_153G00436660 Rroxscaffold_2G00104720
rosa_rugosa	Rorug02G0363400 Rorug02G0363500
rosa_samantha	Rh2AG414300 Rh2BG424200 Rh2CG400700 Rh2DG434200
rosa_wichuraiana	Rw2G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1190
Acc36I	ACCTGC	1 cut(s)	891
AccB1I	GGYRCC	1 cut(s)	442
AccB7I	CCANNNNNTGG	2 cut(s)	713, 866
AccI	GTMKAC	1 cut(s)	702
AccII	CGCG	2 cut(s)	1129, 1335
AccIII	TCCGGA	1 cut(s)	732
AclWI	GGATC	6 cut(s)	631, 743, 1257, 1286, 1299, 1467
AcsI	RAATTY	3 cut(s)	273, 574, 1591
AcuI	CTGAAG	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	686
AfaI	GTAC	4 cut(s)	49, 157, 902, 1650
AfiI	CCNNNNNNNGG	4 cut(s)	577, 713, 866, 914
AgsI	TTSAA	4 cut(s)	1490, 1509, 1550, 1631
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	7 cut(s)	16, 109, 559, 769, 847, 1438, 1583
AluI	AGCT	7 cut(s)	16, 109, 559, 769, 847, 1438, 1583
Alw21I	GWGCWC	4 cut(s)	18, 760, 1216, 1585
Alw26I	GTCTC	3 cut(s)	239, 476, 1102
Alw44I	GTGCAC	1 cut(s)	756
AlwI	GGATC	6 cut(s)	631, 743, 1257, 1286, 1299, 1467
AlwNI	CAGNNNCTG	1 cut(s)	559
Aor13HI	TCCGGA	1 cut(s)	732
AoxI	GGCC	3 cut(s)	329, 658, 1458
ApaLI	GTGCAC	1 cut(s)	756
ApeKI	GCWGC	6 cut(s)	135, 204, 371, 553, 556, 1199
ApoI	RAATTY	3 cut(s)	273, 574, 1591
Asp700I	GAANNNNTTC	1 cut(s)	1494
AspLEI	GCGC	3 cut(s)	726, 1129, 1423
AspS9I	GGNCC	6 cut(s)	4, 329, 464, 658, 917, 1458
AsuC2I	CCSGG	3 cut(s)	471, 610, 915
AsuHPI	GGTGA	5 cut(s)	19, 184, 460, 1370, 1694
AsuII	TTCGAA	2 cut(s)	395, 1595
AvaII	GGWCC	3 cut(s)	4, 464, 917
BaeGI	GKGCMC	1 cut(s)	760
BamHI	GGATCC	1 cut(s)	1291
BanI	GGYRCC	1 cut(s)	442
BanII	GRGCYC	2 cut(s)	18, 1585
BbsI	GAAGAC	2 cut(s)	596, 597
Bbv12I	GWGCWC	4 cut(s)	18, 760, 1216, 1585
BbvI	GCAGC	6 cut(s)	147, 216, 358, 565, 568, 1186
BccI	CCATC	3 cut(s)	408, 986, 1202
BciT130I	CCWGG	1 cut(s)	196
BciVI	GTATCC	1 cut(s)	864
BclI	TGATCA	1 cut(s)	1258
BcnI	CCSGG	3 cut(s)	471, 610, 915
BcoDI	GTCTC	3 cut(s)	239, 476, 1102
BfaI	CTAG	2 cut(s)	239, 921
BfmI	CTRYAG	2 cut(s)	133, 1237
BfuAI	ACCTGC	1 cut(s)	891
BfuI	GTATCC	1 cut(s)	864
BglII	AGATCT	1 cut(s)	862
BlpI	GCTNAGC	1 cut(s)	17
Bme1390I	CCNGG	4 cut(s)	196, 471, 610, 915
Bme18I	GGWCC	3 cut(s)	4, 464, 917
BmgT120I	GGNCC	6 cut(s)	4, 329, 464, 658, 917, 1458
BmiI	GGNNCC	5 cut(s)	330, 364, 444, 659, 1293
BmrFI	CCNGG	4 cut(s)	196, 471, 610, 915
BmsI	GCATC	3 cut(s)	1005, 1549, 1612
BpiI	GAAGAC	2 cut(s)	596, 597
BplI	GAGNNNNNCTC	2 cut(s)	1567, 1599
Bpu1102I	GCTNAGC	1 cut(s)	17
Bpu14I	TTCGAA	2 cut(s)	395, 1595
BpuEI	CTTGAG	2 cut(s)	89, 692
BpuMI	CCSGG	3 cut(s)	471, 610, 915
Bsa29I	ATCGAT	1 cut(s)	626
BsaHI	GRCGYC	1 cut(s)	686
BsaJI	CCNNGG	2 cut(s)	351, 470
BsaWI	WCCGGW	1 cut(s)	732
Bsc4I	CCNNNNNNNGG	4 cut(s)	577, 713, 866, 914
Bse118I	RCCGGY	1 cut(s)	445
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	206
BseAI	TCCGGA	1 cut(s)	732
BseBI	CCWGG	1 cut(s)	196
BseCI	ATCGAT	1 cut(s)	626
BseDI	CCNNGG	2 cut(s)	351, 470
BseGI	GGATG	3 cut(s)	361, 722, 1564
BseLI	CCNNNNNNNGG	4 cut(s)	577, 713, 866, 914
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	31, 907
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	6 cut(s)	56, 92, 101, 511, 554, 900
BseSI	GKGCMC	1 cut(s)	760
BseXI	GCAGC	6 cut(s)	147, 216, 358, 565, 568, 1186
BsgI	GTGCAG	1 cut(s)	1485
Bsh1236I	CGCG	2 cut(s)	1129, 1335
BshFI	GGCC	3 cut(s)	331, 660, 1460
BshNI	GGYRCC	1 cut(s)	442
BshVI	ATCGAT	1 cut(s)	626
BsiHKAI	GWGCWC	4 cut(s)	18, 760, 1216, 1585
BsiSI	CCGG	6 cut(s)	73, 446, 470, 609, 733, 915
BslFI	GGGAC	2 cut(s)	553, 630
BslI	CCNNNNNNNGG	4 cut(s)	577, 713, 866, 914
BsmAI	GTCTC	3 cut(s)	239, 476, 1102
BsmFI	GGGAC	2 cut(s)	553, 630
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	3 cut(s)	331, 660, 1460
Bsp119I	TTCGAA	2 cut(s)	395, 1595
Bsp1286I	GDGCHC	4 cut(s)	18, 760, 1216, 1585
Bsp13I	TCCGGA	1 cut(s)	732
Bsp1407I	TGTACA	1 cut(s)	900
Bsp143I	GATC	9 cut(s)	623, 748, 793, 862, 1249, 1258, 1291, 1372, 1472
Bsp1720I	GCTNAGC	1 cut(s)	17
Bsp68I	TCGCGA	1 cut(s)	1335
BspANI	GGCC	3 cut(s)	331, 660, 1460
BspCNI	CTCAG	2 cut(s)	30, 906
BspDI	ATCGAT	1 cut(s)	626
BspEI	TCCGGA	1 cut(s)	732
BspFNI	CGCG	2 cut(s)	1129, 1335
BspHI	TCATGA	1 cut(s)	1261
BspLI	GGNNCC	5 cut(s)	330, 364, 444, 659, 1293
BspMAI	CTGCAG	1 cut(s)	137
BspMI	ACCTGC	1 cut(s)	891
BspPI	GGATC	6 cut(s)	631, 743, 1257, 1286, 1299, 1467
BspT104I	TTCGAA	2 cut(s)	395, 1595
BspT107I	GGYRCC	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	445
BsrGI	TGTACA	1 cut(s)	900
BsrI	ACTGG	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	445
BssECI	CCNNGG	2 cut(s)	351, 470
BssMI	GATC	9 cut(s)	623, 748, 793, 862, 1249, 1258, 1291, 1372, 1472
BssNAI	GTATAC	1 cut(s)	703
BssNI	GRCGYC	1 cut(s)	686
BssT1I	CCWWGG	1 cut(s)	351
Bst1107I	GTATAC	1 cut(s)	703
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	3 cut(s)	185, 1519, 1537
Bst6I	CTCTTC	7 cut(s)	84, 486, 506, 696, 1431, 1597, 1637
BstACI	GRCGYC	1 cut(s)	686
BstAPI	GCANNNNNTGC	1 cut(s)	1418
BstAUI	TGTACA	1 cut(s)	900
BstBI	TTCGAA	2 cut(s)	395, 1595
BstC8I	GCNNGC	1 cut(s)	1414
BstDEI	CTNAG	2 cut(s)	17, 893
BstF5I	GGATG	3 cut(s)	361, 722, 1564
BstFNI	CGCG	2 cut(s)	1129, 1335
BstHHI	GCGC	3 cut(s)	726, 1129, 1423
BstKTI	GATC	9 cut(s)	626, 751, 796, 865, 1252, 1261, 1294, 1375, 1475
BstMAI	GTCTC	3 cut(s)	239, 476, 1102
BstMBI	GATC	9 cut(s)	623, 748, 793, 862, 1249, 1258, 1291, 1372, 1472
BstNI	CCWGG	1 cut(s)	196
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	4 cut(s)	194, 469, 608, 913
BstSFI	CTRYAG	2 cut(s)	133, 1237
BstSLI	GKGCMC	1 cut(s)	760
BstUI	CGCG	2 cut(s)	1129, 1335
BstV1I	GCAGC	6 cut(s)	147, 216, 358, 565, 568, 1186
BstV2I	GAAGAC	2 cut(s)	596, 597
BstX2I	RGATCY	4 cut(s)	748, 862, 1291, 1472
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	4 cut(s)	748, 862, 1291, 1472
BstZ17I	GTATAC	1 cut(s)	703
Bsu15I	ATCGAT	1 cut(s)	626
BsuI	GTATCC	1 cut(s)	864
BsuRI	GGCC	3 cut(s)	331, 660, 1460
BsuTUI	ATCGAT	1 cut(s)	626
BtsCI	GGATG	3 cut(s)	361, 722, 1564
BtsI	GCAGTG	2 cut(s)	978, 1218
BtsIMutI	CAGTG	4 cut(s)	901, 978, 1218, 1476
BtuMI	TCGCGA	1 cut(s)	1335
BveI	ACCTGC	1 cut(s)	891
Cac8I	GCNNGC	1 cut(s)	1414
CaiI	CAGNNNCTG	1 cut(s)	559
CciI	TCATGA	1 cut(s)	1261
CfoI	GCGC	3 cut(s)	726, 1129, 1423
Cfr10I	RCCGGY	1 cut(s)	445
Cfr13I	GGNCC	6 cut(s)	4, 329, 464, 658, 917, 1458
ClaI	ATCGAT	1 cut(s)	626
CseI	GACGC	2 cut(s)	694, 1155
Csp6I	GTAC	4 cut(s)	48, 156, 901, 1649
CviAII	CATG	9 cut(s)	386, 404, 620, 710, 772, 778, 1035, 1072, 1262
CviQI	GTAC	4 cut(s)	48, 156, 901, 1649
DdeI	CTNAG	2 cut(s)	17, 893
DpnI	GATC	9 cut(s)	625, 750, 795, 864, 1251, 1260, 1293, 1374, 1474
DpnII	GATC	9 cut(s)	623, 748, 793, 862, 1249, 1258, 1291, 1372, 1472
DrdI	GACNNNNNNGTC	1 cut(s)	1190
DseDI	GACNNNNNNGTC	1 cut(s)	1190
Eam1104I	CTCTTC	7 cut(s)	84, 486, 506, 696, 1431, 1597, 1637
EarI	CTCTTC	7 cut(s)	84, 486, 506, 696, 1431, 1597, 1637
EciI	GGCGGA	4 cut(s)	59, 209, 456, 1540
Ecl136II	GAGCTC	2 cut(s)	16, 1583
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	2 cut(s)	18, 1585
Eco47I	GGWCC	3 cut(s)	4, 464, 917
Eco53kI	GAGCTC	2 cut(s)	16, 1583
Eco57I	CTGAAG	1 cut(s)	581
EcoICRI	GAGCTC	2 cut(s)	16, 1583
EcoRI	GAATTC	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	2 cut(s)	18, 1585
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	9 cut(s)	389, 407, 623, 713, 775, 781, 1038, 1075, 1265
FalI	AAGNNNNNCTT	2 cut(s)	1611, 1643
FaqI	GGGAC	2 cut(s)	553, 630
FatI	CATG	9 cut(s)	385, 403, 619, 709, 771, 777, 1034, 1071, 1261
FauI	CCCGC	5 cut(s)	59, 272, 299, 372, 1122
FauNDI	CATATG	2 cut(s)	597, 1297
FbaI	TGATCA	1 cut(s)	1258
FblI	GTMKAC	1 cut(s)	702
FokI	GGATG	3 cut(s)	368, 729, 1571
FriOI	GRGCYC	2 cut(s)	18, 1585
FspBI	CTAG	2 cut(s)	239, 921
GlaI	GCGC	3 cut(s)	725, 1128, 1422
HaeIII	GGCC	3 cut(s)	331, 660, 1460
HapII	CCGG	6 cut(s)	73, 446, 470, 609, 733, 915
HgaI	GACGC	2 cut(s)	694, 1155
HhaI	GCGC	3 cut(s)	726, 1129, 1423
Hin1I	GRCGYC	1 cut(s)	686
Hin1II	CATG	9 cut(s)	389, 407, 623, 713, 775, 781, 1038, 1075, 1265
Hin6I	GCGC	3 cut(s)	724, 1127, 1421
HinP1I	GCGC	3 cut(s)	724, 1127, 1421
HincII	GTYRAC	1 cut(s)	1533
HindII	GTYRAC	1 cut(s)	1533
HindIII	AAGCTT	2 cut(s)	845, 1436
HinfI	GANTC	8 cut(s)	76, 409, 566, 729, 1076, 1226, 1274, 1304
HpaII	CCGG	6 cut(s)	73, 446, 470, 609, 733, 915
HphI	GGTGA	5 cut(s)	19, 184, 460, 1370, 1694
Hpy166II	GTNNAC	4 cut(s)	703, 758, 901, 1533
Hpy188I	TCNGA	6 cut(s)	272, 1001, 1231, 1258, 1309, 1699
Hpy188III	TCNNGA	9 cut(s)	639, 671, 733, 746, 878, 1262, 1334, 1378, 1509
Hpy8I	GTNNAC	4 cut(s)	703, 758, 901, 1533
HpyAV	CCTTC	4 cut(s)	556, 607, 1132, 1515
HpyCH4III	ACNGT	3 cut(s)	185, 1519, 1537
HpyF3I	CTNAG	2 cut(s)	17, 893
Hsp92I	GRCGYC	1 cut(s)	686
Hsp92II	CATG	9 cut(s)	389, 407, 623, 713, 775, 781, 1038, 1075, 1265
HspAI	GCGC	3 cut(s)	724, 1127, 1421
Kpn2I	TCCGGA	1 cut(s)	732
Ksp22I	TGATCA	1 cut(s)	1258
Kzo9I	GATC	9 cut(s)	623, 748, 793, 862, 1249, 1258, 1291, 1372, 1472
LmnI	GCTCC	4 cut(s)	114, 362, 1219, 1580
Lsp1109I	GCAGC	6 cut(s)	147, 216, 358, 565, 568, 1186
LweI	GCATC	3 cut(s)	1005, 1549, 1612
MaeI	CTAG	2 cut(s)	239, 921
MaeIII	GTNAC	6 cut(s)	190, 636, 973, 1358, 1513, 1682
MalI	GATC	9 cut(s)	625, 750, 795, 864, 1251, 1260, 1293, 1374, 1474
MboI	GATC	9 cut(s)	623, 748, 793, 862, 1249, 1258, 1291, 1372, 1472
MfeI	CAATTG	1 cut(s)	1545
MflI	RGATCY	4 cut(s)	748, 862, 1291, 1472
MhlI	GDGCHC	4 cut(s)	18, 760, 1216, 1585
MluCI	AATT	7 cut(s)	273, 574, 832, 950, 1187, 1545, 1591
MlyI	GAGTC	2 cut(s)	70, 575
MmeI	TCCRAC	1 cut(s)	1227
MroI	TCCGGA	1 cut(s)	732
MroXI	GAANNNNTTC	1 cut(s)	1494
MseI	TTAA	3 cut(s)	984, 1044, 1167
MslI	CAYNNNNRTG	2 cut(s)	776, 1659
MspA1I	CMGCKG	1 cut(s)	559
MspI	CCGG	6 cut(s)	73, 446, 470, 609, 733, 915
MspR9I	CCNGG	4 cut(s)	196, 471, 610, 915
MunI	CAATTG	1 cut(s)	1545
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	2 cut(s)	1129, 1335
NciI	CCSGG	3 cut(s)	471, 610, 915
NdeI	CATATG	2 cut(s)	597, 1297
NdeII	GATC	9 cut(s)	623, 748, 793, 862, 1249, 1258, 1291, 1372, 1472
NlaIII	CATG	9 cut(s)	389, 407, 623, 713, 775, 781, 1038, 1075, 1265
NlaIV	GGNNCC	5 cut(s)	330, 364, 444, 659, 1293
NmuCI	GTSAC	6 cut(s)	190, 636, 973, 1358, 1513, 1682
NruI	TCGCGA	1 cut(s)	1335
NspI	RCATGY	1 cut(s)	713
NspV	TTCGAA	2 cut(s)	395, 1595
PagI	TCATGA	1 cut(s)	1261
PctI	GAATGC	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	1494
PfeI	GAWTC	6 cut(s)	409, 729, 1076, 1226, 1274, 1304
PflMI	CCANNNNNTGG	2 cut(s)	713, 866
PfoI	TCCNGGA	1 cut(s)	608
PleI	GAGTC	2 cut(s)	70, 574
PpsI	GAGTC	2 cut(s)	70, 574
Psp124BI	GAGCTC	2 cut(s)	18, 1585
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	5 cut(s)	330, 364, 444, 659, 1293
PspPI	GGNCC	6 cut(s)	4, 329, 464, 658, 917, 1458
PstI	CTGCAG	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	559
PsuI	RGATCY	4 cut(s)	748, 862, 1291, 1472
PvuII	CAGCTG	1 cut(s)	559
RruI	TCGCGA	1 cut(s)	1335
RsaI	GTAC	4 cut(s)	49, 157, 902, 1650
RsaNI	GTAC	4 cut(s)	48, 156, 901, 1649
RseI	CAYNNNNRTG	2 cut(s)	776, 1659
SacI	GAGCTC	2 cut(s)	18, 1585
SaqAI	TTAA	3 cut(s)	984, 1044, 1167
Sau3AI	GATC	9 cut(s)	623, 748, 793, 862, 1249, 1258, 1291, 1372, 1472
Sau96I	GGNCC	6 cut(s)	4, 329, 464, 658, 917, 1458
SchI	GAGTC	2 cut(s)	70, 575
ScrFI	CCNGG	4 cut(s)	196, 471, 610, 915
SduI	GDGCHC	4 cut(s)	18, 760, 1216, 1585
SfaNI	GCATC	3 cut(s)	1005, 1549, 1612
SfcI	CTRYAG	2 cut(s)	133, 1237
SfuI	TTCGAA	2 cut(s)	395, 1595
SinI	GGWCC	3 cut(s)	4, 464, 917
SmiMI	CAYNNNNRTG	2 cut(s)	776, 1659
SmlI	CTYRAG	2 cut(s)	104, 671
SmoI	CTYRAG	2 cut(s)	104, 671
Sse9I	AATT	7 cut(s)	273, 574, 832, 950, 1187, 1545, 1591
SspMI	CTAG	2 cut(s)	239, 921
SstI	GAGCTC	2 cut(s)	18, 1585
StyD4I	CCNGG	4 cut(s)	194, 469, 608, 913
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	3 cut(s)	185, 1519, 1537
TaqI	TCGA	5 cut(s)	321, 395, 626, 1574, 1595
TasI	AATT	7 cut(s)	273, 574, 832, 950, 1187, 1545, 1591
TatI	WGTACW	2 cut(s)	155, 900
TauI	GCSGC	5 cut(s)	57, 225, 228, 297, 300
TfiI	GAWTC	6 cut(s)	409, 729, 1076, 1226, 1274, 1304
Tru1I	TTAA	3 cut(s)	984, 1044, 1167
Tru9I	TTAA	3 cut(s)	984, 1044, 1167
TscAI	CASTG	4 cut(s)	901, 978, 1225, 1483
TseFI	GTSAC	6 cut(s)	190, 636, 973, 1358, 1513, 1682
TseI	GCWGC	6 cut(s)	135, 204, 371, 553, 556, 1199
Tsp45I	GTSAC	6 cut(s)	190, 636, 973, 1358, 1513, 1682
TspGWI	ACGGA	2 cut(s)	426, 1034
TspRI	CASTG	4 cut(s)	901, 978, 1225, 1483
Van91I	CCANNNNNTGG	2 cut(s)	713, 866
VneI	GTGCAC	1 cut(s)	756
VpaK11BI	GGWCC	3 cut(s)	4, 464, 917
XapI	RAATTY	3 cut(s)	273, 574, 1591
XceI	RCATGY	1 cut(s)	713
XmiI	GTMKAC	1 cut(s)	702
XmnI	GAANNNNTTC	1 cut(s)	1494
XspI	CTAG	2 cut(s)	239, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.