Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000153

Orthogroup ID

OG0008604

Physical Location & Seq

Genomic Coordinates Reverse (-)

179434 .. 186222

Gene Structure 6789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_153G00436660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2109 bp

ATGGCTTCATACAGGCCATTCCCGCCTCAACCGGCTTTTCCGCCACCGCCGCCGAATCAAAACCCCATGGCGCCGCCGCCACGTGGCAATCAGTATAACCAGAATTGGGGTTATAATGCCGGTGGCGGCGGCGGCGGCGATGGGGCTGTGCCGGCTGCTCCTTCTTCATATCCCCAAAACTACATTCACCACCCCCATAGTAATTATGGTCCTCCCAGAGCTCAGCACCCTCACCCACCACCGCAATACTCGTACCCGCCGCCACCGCCTCCTCCGCCGGACTCTTCATACCCACCTCCACCGCCTCCTCAAGCTCCTCCGGGGAAAAATATGCCCCTGCAGCCTCCACAAGCCCCAATGTACTACCAGTCTAACTCTCAATATACACAGTATAGTCACCAGGCAATGCAGCCACCGCCACCTCCGCCGCCGCCTTTGTCTCCTAGTTCGTCTATCCCACCGCCACCCCCGCCTCCGAATTCTCCACCGCCTCCCCCGCCGCCGCAGAGTAGGGAGAGTGGTTTCGATAAGGGGCCAGATTACAAAGGGGCTTCCAAGGATGTGGGAGCCTCTGCTGCCAAGCGGGAACATGGGCATTCGAACCATCATGGGATTCCCCATAAACACAAGCCCCCTGTTCCGTTGGTGCCGGTGAAGAAGTCAAATGGTCCGCCGGGGAGAGTGGAGACAGAGGAAGAGAGGAGGTTGAGGAAGAAGAGGGAGTTTGAGAAGCAAAGACAAGAGGAGAAGCATAGGCAGCAGCTGAAGGAGTCCCAAAATTCGGTTTTGCAGAAGACACATATGTTGTCTTCCGGGAAGGGACATGGATCGATTGCAGGGTCACGAATGGGGGAAAGGAGGGCCACTCCATTCTTGAGTGGTGAGAGGGCTGAAAATAGGCTAAAGAAGCCAACAACATTTGTGTGCAAGTTGAAATTCCGGAATGAACTTCCAGATCCAAGTGCACAACCCAAGCTCATGTCCATGAAGAAAGACAAAGATCAATATACAAAATACACGATTACATCATTAGAGAAAAATTACAAGCCCAAGCTTTTTGTTGAGCCAGATCTTGGGATACCTCTTGACCTGCTTGACCTCAGTGTGTACAATCCTCCTCCCGGTCCTAGACCACCACTTGCACCAGAAGATGAGGAATTATTGCGTGATGATGTAGCAGTGACCCCTGTTAAAAAAGATGGCATCAGAAGAAAAGAGCGACCTACGGATAAAGGAGTTGCATGGCTGGTTAAAACACAATATATTTCTCCTATTAGCATGGATTCAGCAAAACAGTCTCTAACAGAAAAACAAGCAAAAGAACTGCGGGAAATGAAGGGAGGACGCAATCTTTTGGACAACCTTAATGATAGGGAGAGGCAGATAAAGGAAATTGAGGCATCCTTTGAGGCCTGCAAGTCGCGCCCTGTTCATGCAACCAATAAAAATCTATACCCTGTTGAGGTTCTACCTCTTTTGCCTGACTTTGAGCGGTATGATGACCAATTCGTCCTTGCTGCATTTGATGGTGCTCCCACTGCTGATTCAGAAATCTACAGCAAGTTGGATCAGTCTGATCATGATGTCTGTGAATCAAGGGCAATTATGAAAAGTTATAAGGTAACAGGTGCAGACCCAGCTAATCCAGACAAATTTTTGGCGTACATGGTTCCTTCTCCAAACGAGCTATCAAAGGATCCATATGATGAATCAGAAGATGTTTCATATTCTTGGGTTCGCGAGTATCAGTATGATGTAAGAGGTGACGATGTTGATGATCTCACGACATACCTTGTATCATTTGATGAAGATGAAGCACGCTATGCGCCTCTTCCAGCAAAGCTTGTTTTGAGGAAAAAAAGGGCCAAAGAGGGAAGATCCACTGATGAGGTTGAACATTTTCCTGCACCTTCAAGAGTGACTGTCAGGCGGAGGTCAACTGTTTCTGCAATTGAACTAAAGGATGCAGGGGATTATTCGAGGGGAGCTCTATCAAATTCGAAAAGAAGAGGGTTTGATAATGAAGATGCCCTTGAAAGACCACAGAAGAGGGTACGACACCAAGATGTTGATGAATATAGTGGTGGTGACGATGATTTATCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009909 GO:0009910 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0019538 GO:0030880 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

Paf1

Protein Analysis

702

Amino Acids

78.52

Weight (kDa)

8.3

Isoelectric Point (pI)

64.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Paf1	PF03985	307 - 645	1.2e-56	Paf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79730
fragaria_vesca	FvH4_6g32381 FvH4_6g32381
malus_domestica	MD09G1202900.v1.1 MD17G1184000.v1.1
prunus_persica	Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.3G059100_v2.0.a1
pyrus_communis	pycom17g19340
rosa_chinensis	RchiOBHm_Chr2g0140531
rosa_laevigata	RLG00000019875
rosa_multiflora	Rmu_sc0002490.1_g000024
rosa_roxburghii	Rroxscaffold_153G00436660 Rroxscaffold_2G00104720
rosa_rugosa	Rorug02G0363400 Rorug02G0363500
rosa_samantha	Rh2AG414300 Rh2BG424200 Rh2CG400700 Rh2DG434200
rosa_wichuraiana	Rw2G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	114, 1617
AasI	GACNNNNNNGTC	1 cut(s)	1508
Acc36I	ACCTGC	1 cut(s)	1098
AccB1I	GGYRCC	2 cut(s)	70, 646
AccB7I	CCANNNNNTGG	1 cut(s)	1073
AccBSI	CCGCTC	1 cut(s)	1492
AccII	CGCG	2 cut(s)	1423, 1740
AccIII	TCCGGA	1 cut(s)	939
AclWI	GGATC	6 cut(s)	835, 950, 1575, 1691, 1704, 1872
AcsI	RAATTY	5 cut(s)	478, 778, 935, 1652, 1996
AcuI	CTGAAG	1 cut(s)	785
AcvI	CACGTG	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	5 cut(s)	254, 362, 1109, 1664, 2055
AfiI	CCNNNNNNNGG	6 cut(s)	83, 106, 781, 1073, 1121, 1462
AgsI	TTSAA	5 cut(s)	934, 1895, 1914, 1955, 2036
AjnI	CCWGG	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AluBI	AGCT	9 cut(s)	221, 314, 763, 976, 1054, 1640, 1687, 1843, 1988
AluI	AGCT	9 cut(s)	221, 314, 763, 976, 1054, 1640, 1687, 1843, 1988
Alw21I	GWGCWC	4 cut(s)	223, 967, 1534, 1990
Alw26I	GTCTC	3 cut(s)	444, 680, 1302
Alw44I	GTGCAC	1 cut(s)	963
AlwI	GGATC	6 cut(s)	835, 950, 1575, 1691, 1704, 1872
AlwNI	CAGNNNCTG	1 cut(s)	763
Aor13HI	TCCGGA	1 cut(s)	939
AoxI	GGCC	5 cut(s)	14, 533, 861, 1410, 1863
ApaLI	GTGCAC	1 cut(s)	963
ApeKI	GCWGC	7 cut(s)	155, 340, 409, 575, 757, 760, 1517
ApoI	RAATTY	5 cut(s)	478, 778, 935, 1652, 1996
Asp700I	GAANNNNTTC	1 cut(s)	1899
AspLEI	GCGC	3 cut(s)	73, 1425, 1828
AspS9I	GGNCC	6 cut(s)	209, 533, 668, 861, 1124, 1863
AsuC2I	CCSGG	4 cut(s)	321, 675, 814, 1122
AsuHPI	GGTGA	7 cut(s)	179, 224, 389, 664, 893, 1775, 2099
AsuII	TTCGAA	2 cut(s)	599, 2000
AvaII	GGWCC	3 cut(s)	209, 668, 1124
BaeGI	GKGCMC	1 cut(s)	967
BamHI	GGATCC	1 cut(s)	1696
BanI	GGYRCC	2 cut(s)	70, 646
BanII	GRGCYC	2 cut(s)	223, 1990
BbrPI	CACGTG	1 cut(s)	83
BbsI	GAAGAC	2 cut(s)	800, 801
Bbv12I	GWGCWC	4 cut(s)	223, 967, 1534, 1990
BbvI	GCAGC	7 cut(s)	142, 352, 421, 562, 769, 772, 1504
BccI	CCATC	4 cut(s)	134, 612, 1193, 1520
BciT130I	CCWGG	1 cut(s)	401
BciVI	GTATCC	1 cut(s)	1071
BclI	TGATCA	1 cut(s)	1576
BcnI	CCSGG	4 cut(s)	321, 675, 814, 1122
BcoDI	GTCTC	3 cut(s)	444, 680, 1302
BfaI	CTAG	2 cut(s)	444, 1128
BfmI	CTRYAG	2 cut(s)	338, 1555
BfoI	RGCGCY	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	1098
BfuI	GTATCC	1 cut(s)	1071
BglII	AGATCT	1 cut(s)	1069
BlpI	GCTNAGC	1 cut(s)	222
Bme1390I	CCNGG	5 cut(s)	321, 401, 675, 814, 1122
Bme18I	GGWCC	3 cut(s)	209, 668, 1124
BmgT120I	GGNCC	6 cut(s)	209, 533, 668, 861, 1124, 1863
BmiI	GGNNCC	6 cut(s)	72, 534, 568, 648, 1671, 1698
BmrFI	CCNGG	5 cut(s)	321, 401, 675, 814, 1122
BmsI	GCATC	4 cut(s)	1212, 1409, 1954, 2017
BpiI	GAAGAC	2 cut(s)	800, 801
BplI	GAGNNNNNCTC	4 cut(s)	850, 882, 1972, 2004
Bpu1102I	GCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	2 cut(s)	599, 2000
BpuEI	CTTGAG	2 cut(s)	294, 895
BpuMI	CCSGG	4 cut(s)	321, 675, 814, 1122
Bsa29I	ATCGAT	1 cut(s)	830
BsaAI	YACGTR	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	4 cut(s)	66, 320, 555, 674
BsaWI	WCCGGW	1 cut(s)	939
Bsc4I	CCNNNNNNNGG	6 cut(s)	83, 106, 781, 1073, 1121, 1462
Bse118I	RCCGGY	4 cut(s)	31, 119, 151, 649
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	939
BseBI	CCWGG	1 cut(s)	401
BseCI	ATCGAT	1 cut(s)	830
BseDI	CCNNGG	4 cut(s)	66, 320, 555, 674
BseGI	GGATG	3 cut(s)	565, 1400, 1969
BseLI	CCNNNNNNNGG	6 cut(s)	83, 106, 781, 1073, 1121, 1462
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	236, 1114
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	6 cut(s)	261, 297, 306, 715, 758, 1107
BseSI	GKGCMC	1 cut(s)	967
BseXI	GCAGC	7 cut(s)	142, 352, 421, 562, 769, 772, 1504
BseYI	CCCAGC	1 cut(s)	1636
BsgI	GTGCAG	2 cut(s)	1650, 1890
Bsh1236I	CGCG	2 cut(s)	1423, 1740
BshFI	GGCC	5 cut(s)	16, 535, 863, 1412, 1865
BshNI	GGYRCC	2 cut(s)	70, 646
BshVI	ATCGAT	1 cut(s)	830
BsiHKAI	GWGCWC	4 cut(s)	223, 967, 1534, 1990
BslFI	GGGAC	2 cut(s)	757, 834
BslI	CCNNNNNNNGG	6 cut(s)	83, 106, 781, 1073, 1121, 1462
BsmAI	GTCTC	3 cut(s)	444, 680, 1302
BsmFI	GGGAC	2 cut(s)	757, 834
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	5 cut(s)	16, 535, 863, 1412, 1865
Bsp119I	TTCGAA	2 cut(s)	599, 2000
Bsp1286I	GDGCHC	4 cut(s)	223, 967, 1534, 1990
Bsp13I	TCCGGA	1 cut(s)	939
Bsp1407I	TGTACA	1 cut(s)	1107
Bsp143I	GATC	9 cut(s)	827, 955, 1000, 1069, 1567, 1576, 1696, 1777, 1877
Bsp1720I	GCTNAGC	1 cut(s)	222
Bsp19I	CCATGG	1 cut(s)	66
Bsp68I	TCGCGA	1 cut(s)	1740
BspANI	GGCC	5 cut(s)	16, 535, 863, 1412, 1865
BspCNI	CTCAG	2 cut(s)	235, 1113
BspDI	ATCGAT	1 cut(s)	830
BspEI	TCCGGA	1 cut(s)	939
BspFNI	CGCG	2 cut(s)	1423, 1740
BspHI	TCATGA	1 cut(s)	1579
BspLI	GGNNCC	6 cut(s)	72, 534, 568, 648, 1671, 1698
BspMAI	CTGCAG	1 cut(s)	342
BspMI	ACCTGC	1 cut(s)	1098
BspPI	GGATC	6 cut(s)	835, 950, 1575, 1691, 1704, 1872
BspT104I	TTCGAA	2 cut(s)	599, 2000
BspT107I	GGYRCC	2 cut(s)	70, 646
BsrBI	CCGCTC	1 cut(s)	1492
BsrDI	GCAATG	1 cut(s)	411
BsrFI	RCCGGY	4 cut(s)	31, 119, 151, 649
BsrGI	TGTACA	1 cut(s)	1107
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	4 cut(s)	31, 119, 151, 649
BssECI	CCNNGG	4 cut(s)	66, 320, 555, 674
BssMI	GATC	9 cut(s)	827, 955, 1000, 1069, 1567, 1576, 1696, 1777, 1877
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	2 cut(s)	66, 555
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	4 cut(s)	390, 1296, 1924, 1942
Bst6I	CTCTTC	6 cut(s)	289, 690, 710, 1836, 2002, 2042
BstACI	GRCGYC	1 cut(s)	71
BstAPI	GCANNNNNTGC	1 cut(s)	1823
BstAUI	TGTACA	1 cut(s)	1107
BstBAI	YACGTR	1 cut(s)	83
BstBI	TTCGAA	2 cut(s)	599, 2000
BstC8I	GCNNGC	3 cut(s)	153, 1414, 1819
BstDEI	CTNAG	2 cut(s)	222, 1100
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	3 cut(s)	565, 1400, 1969
BstFNI	CGCG	2 cut(s)	1423, 1740
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	3 cut(s)	73, 1425, 1828
BstKTI	GATC	9 cut(s)	830, 958, 1003, 1072, 1570, 1579, 1699, 1780, 1880
BstMAI	GTCTC	3 cut(s)	444, 680, 1302
BstMBI	GATC	9 cut(s)	827, 955, 1000, 1069, 1567, 1576, 1696, 1777, 1877
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	5 cut(s)	319, 399, 673, 812, 1120
BstSFI	CTRYAG	2 cut(s)	338, 1555
BstSLI	GKGCMC	1 cut(s)	967
BstUI	CGCG	2 cut(s)	1423, 1740
BstV1I	GCAGC	7 cut(s)	142, 352, 421, 562, 769, 772, 1504
BstV2I	GAAGAC	2 cut(s)	800, 801
BstX2I	RGATCY	4 cut(s)	955, 1069, 1696, 1877
BstXI	CCANNNNNNTGG	1 cut(s)	562
BstYI	RGATCY	4 cut(s)	955, 1069, 1696, 1877
Bsu15I	ATCGAT	1 cut(s)	830
BsuI	GTATCC	1 cut(s)	1071
BsuRI	GGCC	5 cut(s)	16, 535, 863, 1412, 1865
BsuTUI	ATCGAT	1 cut(s)	830
BtgI	CCRYGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	565, 1400, 1969
BtsI	GCAGTG	2 cut(s)	1185, 1536
BtsIMutI	CAGTG	4 cut(s)	1108, 1185, 1536, 1881
BtuMI	TCGCGA	1 cut(s)	1740
BveI	ACCTGC	1 cut(s)	1098
Cac8I	GCNNGC	3 cut(s)	153, 1414, 1819
CaiI	CAGNNNCTG	1 cut(s)	763
CciI	TCATGA	1 cut(s)	1579
CfoI	GCGC	3 cut(s)	73, 1425, 1828
Cfr10I	RCCGGY	4 cut(s)	31, 119, 151, 649
Cfr13I	GGNCC	6 cut(s)	209, 533, 668, 861, 1124, 1863
ClaI	ATCGAT	1 cut(s)	830
CseI	GACGC	1 cut(s)	1353
Csp6I	GTAC	5 cut(s)	253, 361, 1108, 1663, 2054
CviQI	GTAC	5 cut(s)	253, 361, 1108, 1663, 2054
DdeI	CTNAG	2 cut(s)	222, 1100
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	9 cut(s)	829, 957, 1002, 1071, 1569, 1578, 1698, 1779, 1879
DpnII	GATC	9 cut(s)	827, 955, 1000, 1069, 1567, 1576, 1696, 1777, 1877
DrdI	GACNNNNNNGTC	1 cut(s)	1508
DseDI	GACNNNNNNGTC	1 cut(s)	1508
Eam1104I	CTCTTC	6 cut(s)	289, 690, 710, 1836, 2002, 2042
EarI	CTCTTC	6 cut(s)	289, 690, 710, 1836, 2002, 2042
EciI	GGCGGA	5 cut(s)	30, 264, 414, 660, 1945
Ecl136II	GAGCTC	2 cut(s)	221, 1988
Eco130I	CCWWGG	2 cut(s)	66, 555
Eco147I	AGGCCT	1 cut(s)	1412
Eco24I	GRGCYC	2 cut(s)	223, 1990
Eco47I	GGWCC	3 cut(s)	209, 668, 1124
Eco53kI	GAGCTC	2 cut(s)	221, 1988
Eco57I	CTGAAG	1 cut(s)	785
Eco72I	CACGTG	1 cut(s)	83
EcoICRI	GAGCTC	2 cut(s)	221, 1988
EcoRI	GAATTC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	2 cut(s)	66, 555
EcoT38I	GRGCYC	2 cut(s)	223, 1990
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
ErhI	CCWWGG	2 cut(s)	66, 555
FalI	AAGNNNNNCTT	2 cut(s)	2016, 2048
FaqI	GGGAC	2 cut(s)	757, 834
FauI	CCCGC	6 cut(s)	30, 264, 477, 504, 576, 1320
FauNDI	CATATG	2 cut(s)	801, 1702
FbaI	TGATCA	1 cut(s)	1576
FokI	GGATG	3 cut(s)	572, 1387, 1976
FriOI	GRGCYC	2 cut(s)	223, 1990
FspBI	CTAG	2 cut(s)	444, 1128
GlaI	GCGC	3 cut(s)	72, 1424, 1827
GsaI	CCCAGC	1 cut(s)	1640
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	5 cut(s)	16, 535, 863, 1412, 1865
HgaI	GACGC	1 cut(s)	1353
HhaI	GCGC	3 cut(s)	73, 1425, 1828
Hin1I	GRCGYC	1 cut(s)	71
Hin6I	GCGC	3 cut(s)	71, 1423, 1826
HinP1I	GCGC	3 cut(s)	71, 1423, 1826
HincII	GTYRAC	1 cut(s)	1938
HindII	GTYRAC	1 cut(s)	1938
HindIII	AAGCTT	2 cut(s)	1052, 1841
HinfI	GANTC	8 cut(s)	55, 281, 613, 770, 1283, 1544, 1592, 1709
HphI	GGTGA	7 cut(s)	179, 224, 389, 664, 893, 1775, 2099
Hpy166II	GTNNAC	3 cut(s)	965, 1108, 1938
Hpy188I	TCNGA	6 cut(s)	477, 1208, 1549, 1576, 1714, 2104
Hpy8I	GTNNAC	3 cut(s)	965, 1108, 1938
HpyAV	CCTTC	6 cut(s)	171, 760, 811, 1330, 1683, 1920
HpyCH4III	ACNGT	4 cut(s)	390, 1296, 1924, 1942
HpyCH4IV	ACGT	1 cut(s)	82
HpyF3I	CTNAG	2 cut(s)	222, 1100
HpySE526I	ACGT	1 cut(s)	82
Hsp92I	GRCGYC	1 cut(s)	71
HspAI	GCGC	3 cut(s)	71, 1423, 1826
KasI	GGCGCC	1 cut(s)	70
Kpn2I	TCCGGA	1 cut(s)	939
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	1576
Kzo9I	GATC	9 cut(s)	827, 955, 1000, 1069, 1567, 1576, 1696, 1777, 1877
LmnI	GCTCC	5 cut(s)	163, 319, 566, 1537, 1985
Lsp1109I	GCAGC	7 cut(s)	142, 352, 421, 562, 769, 772, 1504
LweI	GCATC	4 cut(s)	1212, 1409, 1954, 2017
MaeI	CTAG	2 cut(s)	444, 1128
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	7 cut(s)	395, 840, 1180, 1621, 1763, 1918, 2087
MalI	GATC	9 cut(s)	829, 957, 1002, 1071, 1569, 1578, 1698, 1779, 1879
MbiI	CCGCTC	1 cut(s)	1492
MboI	GATC	9 cut(s)	827, 955, 1000, 1069, 1567, 1576, 1696, 1777, 1877
MfeI	CAATTG	1 cut(s)	1950
MflI	RGATCY	4 cut(s)	955, 1069, 1696, 1877
MhlI	GDGCHC	4 cut(s)	223, 967, 1534, 1990
Mly113I	GGCGCC	1 cut(s)	71
MlyI	GAGTC	2 cut(s)	275, 779
MmeI	TCCRAC	1 cut(s)	1545
MroI	TCCGGA	1 cut(s)	939
MroNI	GCCGGC	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	1899
MseI	TTAA	3 cut(s)	1191, 1251, 1365
MslI	CAYNNNNRTG	3 cut(s)	922, 983, 2064
MspA1I	CMGCKG	1 cut(s)	763
MspR9I	CCNGG	5 cut(s)	321, 401, 675, 814, 1122
MunI	CAATTG	1 cut(s)	1950
Mva1269I	GAATGC	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	401
MvnI	CGCG	2 cut(s)	1423, 1740
NaeI	GCCGGC	1 cut(s)	153
NarI	GGCGCC	1 cut(s)	71
NciI	CCSGG	4 cut(s)	321, 675, 814, 1122
NcoI	CCATGG	1 cut(s)	66
NdeI	CATATG	2 cut(s)	801, 1702
NdeII	GATC	9 cut(s)	827, 955, 1000, 1069, 1567, 1576, 1696, 1777, 1877
NgoMIV	GCCGGC	1 cut(s)	151
NlaIV	GGNNCC	6 cut(s)	72, 534, 568, 648, 1671, 1698
NmuCI	GTSAC	6 cut(s)	395, 840, 1180, 1763, 1918, 2087
NruI	TCGCGA	1 cut(s)	1740
NspV	TTCGAA	2 cut(s)	599, 2000
PagI	TCATGA	1 cut(s)	1579
PceI	AGGCCT	1 cut(s)	1412
PctI	GAATGC	1 cut(s)	595
PdiI	GCCGGC	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	1899
PfeI	GAWTC	6 cut(s)	55, 613, 1283, 1544, 1592, 1709
PflMI	CCANNNNNTGG	1 cut(s)	1073
PfoI	TCCNGGA	1 cut(s)	812
PleI	GAGTC	2 cut(s)	275, 778
PluTI	GGCGCC	1 cut(s)	74
PmaCI	CACGTG	1 cut(s)	83
PmlI	CACGTG	1 cut(s)	83
PpsI	GAGTC	2 cut(s)	275, 778
Ppu21I	YACGTR	1 cut(s)	83
PsiI	TTATAA	2 cut(s)	114, 1617
Psp124BI	GAGCTC	2 cut(s)	223, 1990
Psp6I	CCWGG	1 cut(s)	399
PspCI	CACGTG	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	1636
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	6 cut(s)	72, 534, 568, 648, 1671, 1698
PspPI	GGNCC	6 cut(s)	209, 533, 668, 861, 1124, 1863
PstI	CTGCAG	1 cut(s)	342
PstNI	CAGNNNCTG	1 cut(s)	763
PsuI	RGATCY	4 cut(s)	955, 1069, 1696, 1877
PvuII	CAGCTG	1 cut(s)	763
RruI	TCGCGA	1 cut(s)	1740
RsaI	GTAC	5 cut(s)	254, 362, 1109, 1664, 2055
RsaNI	GTAC	5 cut(s)	253, 361, 1108, 1663, 2054
RseI	CAYNNNNRTG	3 cut(s)	922, 983, 2064
SacI	GAGCTC	2 cut(s)	223, 1990
SaqAI	TTAA	3 cut(s)	1191, 1251, 1365
Sau3AI	GATC	9 cut(s)	827, 955, 1000, 1069, 1567, 1576, 1696, 1777, 1877
Sau96I	GGNCC	6 cut(s)	209, 533, 668, 861, 1124, 1863
SchI	GAGTC	2 cut(s)	275, 779
ScrFI	CCNGG	5 cut(s)	321, 401, 675, 814, 1122
SduI	GDGCHC	4 cut(s)	223, 967, 1534, 1990
SfaNI	GCATC	4 cut(s)	1212, 1409, 1954, 2017
SfcI	CTRYAG	2 cut(s)	338, 1555
SfoI	GGCGCC	1 cut(s)	72
SfuI	TTCGAA	2 cut(s)	599, 2000
SinI	GGWCC	3 cut(s)	209, 668, 1124
SmiMI	CAYNNNNRTG	3 cut(s)	922, 983, 2064
SmlI	CTYRAG	2 cut(s)	309, 874
SmoI	CTYRAG	2 cut(s)	309, 874
SseBI	AGGCCT	1 cut(s)	1412
SspDI	GGCGCC	1 cut(s)	70
SspMI	CTAG	2 cut(s)	444, 1128
SstI	GAGCTC	2 cut(s)	223, 1990
StuI	AGGCCT	1 cut(s)	1412
StyD4I	CCNGG	5 cut(s)	319, 399, 673, 812, 1120
StyI	CCWWGG	2 cut(s)	66, 555
TaaI	ACNGT	4 cut(s)	390, 1296, 1924, 1942
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	5 cut(s)	525, 599, 830, 1979, 2000
TatI	WGTACW	2 cut(s)	360, 1107
TfiI	GAWTC	6 cut(s)	55, 613, 1283, 1544, 1592, 1709
Tru1I	TTAA	3 cut(s)	1191, 1251, 1365
Tru9I	TTAA	3 cut(s)	1191, 1251, 1365
TscAI	CASTG	4 cut(s)	1108, 1185, 1543, 1888
TseFI	GTSAC	6 cut(s)	395, 840, 1180, 1763, 1918, 2087
TseI	GCWGC	7 cut(s)	155, 340, 409, 575, 757, 760, 1517
Tsp45I	GTSAC	6 cut(s)	395, 840, 1180, 1763, 1918, 2087
TspGWI	ACGGA	2 cut(s)	630, 1241
TspRI	CASTG	4 cut(s)	1108, 1185, 1543, 1888
Van91I	CCANNNNNTGG	1 cut(s)	1073
VneI	GTGCAC	1 cut(s)	963
VpaK11BI	GGWCC	3 cut(s)	209, 668, 1124
XapI	RAATTY	5 cut(s)	478, 778, 935, 1652, 1996
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	1899
XspI	CTAG	2 cut(s)	444, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.