Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008604

Physical Location & Seq

Genomic Coordinates Forward (+)

58024262 .. 58031215

Gene Structure 6954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51094

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2112 bp

ATGGCTTCTTACCGGCCATTCCCGCCTCAACCGGCGTTTCCGCCACCGCCGCCGAATCAAAACCCCATAGCGCCGCCGCCACGTGGCAATCAGTATAACCAGAATTGGGGTTATAATGCCGGTGGCGGCGGCGGCGATGGGGCCGTGCCGGCTGCTCCTTCTTCATACCCCCAAAACTACATTCACCACCCTCATAGTAATTATGGTCCTCCTAGAGCTCAGCATCCTCACCCACCACCGCAATACTCGTACCCGCCGCCACCGCCTCCTCCGCCGGACTCTTCATACCCACCTCCACCGCCTCCTCAAGCTCCTCCGGGGAAAAATATGCCCCTACAGCCTCCACAAGCCCCAATGTACTACCAGTCTAACTCTCAATATGCTCAGTATAGTCACCAGGCAATGCAGCCACCGCCGCCCCTACCGCCACCTTTGTCTCCTAGTTCGTCTATTCCACCGCCGCCCCCGCCTCCAAATTCTCCACCACCTCCCCCGCCGCCGCAGAGTAGGGAGAGGGAGAGTGGTTTCGATAAGGGGCCAGACTACAAAGGGGCTTCCAAGGATGTGGGAGCTTCTGCTGCCAAGCGGGAACATGGGCATTCGAACCATCATGGGATTCCCCATAAACACAAGCCCCCTGTTCCGTTGGTGCCGGTGAAGAAGTCTAATGGGCCGCCGGGGAGAGTGGAGACGGAGGAAGAGAGGAGGTTGAGGAAGAAGAGGGAGTTTGAGAAGCAAAGACAAGAGGAGAAGCATAGGCAGCAGCTGAAGGAGTCCCAAAATTCGGTTTTGCAGAAGACACATATGTTGTCGTCTGGGAAGGGACATGGATCGATTGCAGGGTCACGAATGGGGGAAAGGAGGGCCACTCCATTCTTGAGTGGTGAGAGGGCTGAAAATAGGCTAAAGAAGCCAACAACATTTGTGTGTAAGTTGAAATTCCGGAACGAACTTCCAGATCCAAGTGCACAACCCAAGCTCATGTCCATGAAGAAAGACAAAGATCAATATACAAAATACACGATTACATCGTTAGAGAAAAATTACAAGCCCAAGCTTTTTGTTGAGCCAGATCTTGGGATACCTCTTGACCTGCTTGACCTCAGTGTGTACAATCCTCCTCCCGGTCCTAGACCACCACTTGCACCAGAAGACGAGGAATTATTGCGTGATGATGTAGCAGTGACCCCTGTTAAAAAAGATGGCATCAGAAGAAAAGAGCGACCTACGGATAAAGGAGTTGCATGGCTGGTTAAAACACAATATATTTCTCCTATTAGCATGGATTCAGCAAAACAGTCTCTAACAGAAAAACAAGCAAAAGAACTGCGGGAAATGAAGGGAGGACGCAATCTTTTGGACAACCTTAATGATAGGGAGAGGCAGATAAAGGAAATTGAGGCATCCTTTGAGGCCTGCAAGTCGCGCCCTGTTCATGCAACCAATAAAAATCTATACCCTGTTGAGATTCTACCTCTTTTGCCTGATTTTGAGCGGTATGATGACCAATTCGTCCTTGCTGCATTTGATGGTGCTCCCACTGCTGATTCAGAAATCTACAGCAAGTTGGATCAGTCTGATCATGATGTCTGTGAATCAAGGGCAATTATGAAAAGTTATAAGGTAACAGGTGCAGACCCAGCTAATCCAGACAAATTTTTGGCGTACATGGTCCCTTCTCCAAACGAGCTATCAAAGGATCCATATGATGAATCTGAAGATGTTTCATATTCTTGGGTTCGCGAGTATCAGTATGATGTAAGAGGTGACGATGTTGATGATCTCACCACATACCTTGTATCATTTGATGAAGATGAAGCACGTTATGCGCCTCTTCCAGCAAAGCTTGTTTTGAGGAAAAAAAGGGCCAAAGAGGGAAGATCCACTGATGAGGTCGAACATTTTCCTGCACCTTCAAGAGTGACTGTCAGGCGGAGGTCAACTGTTTCTGCAATTGAACTAAAGGATGCAGGGGATTATTCAAGGGGAGCTCTATCAAATTCGAAAAGAAGAGGGTTTGATAATGAAGATGCCCTTGAAAGACCACAGAAGAGGGTGCGACACCAAGATGTTGATGAATATAGTGGTGGTGACGATGATTTATCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009909 GO:0009910 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0019538 GO:0030880 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

Paf1

Protein Analysis

703

Amino Acids

78.73

Weight (kDa)

8.3

Isoelectric Point (pI)

65.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Paf1	PF03985	308 - 646	2e-56	Paf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79730
fragaria_vesca	FvH4_6g32381 FvH4_6g32381
malus_domestica	MD09G1202900.v1.1 MD17G1184000.v1.1
prunus_persica	Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.3G059100_v2.0.a1
pyrus_communis	pycom17g19340
rosa_chinensis	RchiOBHm_Chr2g0140531
rosa_laevigata	RLG00000019875
rosa_multiflora	Rmu_sc0002490.1_g000024
rosa_roxburghii	Rroxscaffold_153G00436660 Rroxscaffold_2G00104720
rosa_rugosa	Rorug02G0363400 Rorug02G0363500
rosa_samantha	Rh2AG414300 Rh2BG424200 Rh2CG400700 Rh2DG434200
rosa_wichuraiana	Rw2G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	114, 1620
AasI	GACNNNNNNGTC	1 cut(s)	1511
Acc36I	ACCTGC	1 cut(s)	1101
AccB1I	GGYRCC	1 cut(s)	649
AccB7I	CCANNNNNTGG	1 cut(s)	1076
AccBSI	CCGCTC	1 cut(s)	1495
AccII	CGCG	2 cut(s)	1426, 1743
AccIII	TCCGGA	1 cut(s)	942
AclWI	GGATC	6 cut(s)	838, 953, 1578, 1694, 1707, 1875
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	5 cut(s)	475, 781, 938, 1655, 1999
AcuI	CTGAAG	2 cut(s)	788, 1737
AcvI	CACGTG	1 cut(s)	83
AfaI	GTAC	4 cut(s)	251, 359, 1112, 1667
AfiI	CCNNNNNNNGG	5 cut(s)	83, 106, 784, 1076, 1124
AgsI	TTSAA	5 cut(s)	937, 1917, 1958, 1983, 2039
AjnI	CCWGG	1 cut(s)	396
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
Alw21I	GWGCWC	4 cut(s)	220, 970, 1537, 1993
Alw26I	GTCTC	3 cut(s)	441, 683, 1305
Alw44I	GTGCAC	1 cut(s)	966
AlwI	GGATC	6 cut(s)	838, 953, 1578, 1694, 1707, 1875
AlwNI	CAGNNNCTG	1 cut(s)	766
Aor13HI	TCCGGA	1 cut(s)	942
AoxI	GGCC	7 cut(s)	14, 141, 536, 671, 864, 1413, 1866
ApaLI	GTGCAC	1 cut(s)	966
ApeKI	GCWGC	6 cut(s)	152, 406, 578, 760, 763, 1520
ApoI	RAATTY	5 cut(s)	475, 781, 938, 1655, 1999
Asp700I	GAANNNNTTC	1 cut(s)	1902
AspLEI	GCGC	3 cut(s)	73, 1428, 1831
AspS9I	GGNCC	8 cut(s)	141, 206, 536, 671, 864, 1127, 1672, 1866
AsuC2I	CCSGG	3 cut(s)	318, 678, 1125
AsuHPI	GGTGA	8 cut(s)	176, 221, 386, 667, 896, 1777, 1778, 2102
AsuII	TTCGAA	2 cut(s)	602, 2003
AvaII	GGWCC	3 cut(s)	206, 1127, 1672
BaeGI	GKGCMC	1 cut(s)	970
BamHI	GGATCC	1 cut(s)	1699
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	2 cut(s)	220, 1993
BbrPI	CACGTG	1 cut(s)	83
BbsI	GAAGAC	2 cut(s)	803, 1158
Bbv12I	GWGCWC	4 cut(s)	220, 970, 1537, 1993
BbvI	GCAGC	6 cut(s)	139, 418, 565, 772, 775, 1507
BccI	CCATC	4 cut(s)	131, 615, 1196, 1523
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	398
BciVI	GTATCC	1 cut(s)	1074
BclI	TGATCA	1 cut(s)	1579
BcnI	CCSGG	3 cut(s)	318, 678, 1125
BcoDI	GTCTC	3 cut(s)	441, 683, 1305
BfaI	CTAG	3 cut(s)	213, 441, 1131
BfmI	CTRYAG	2 cut(s)	335, 1558
BfoI	RGCGCY	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	1101
BfuI	GTATCC	1 cut(s)	1074
BglI	GCCNNNNNGGC	1 cut(s)	149
BglII	AGATCT	1 cut(s)	1072
BlpI	GCTNAGC	1 cut(s)	219
Bme1390I	CCNGG	4 cut(s)	318, 398, 678, 1125
Bme18I	GGWCC	3 cut(s)	206, 1127, 1672
BmgT120I	GGNCC	8 cut(s)	141, 206, 536, 671, 864, 1127, 1672, 1866
BmiI	GGNNCC	5 cut(s)	142, 537, 651, 1674, 1701
BmrFI	CCNGG	4 cut(s)	318, 398, 678, 1125
BmsI	GCATC	5 cut(s)	232, 1215, 1412, 1957, 2020
BpiI	GAAGAC	2 cut(s)	803, 1158
BplI	GAGNNNNNCTC	2 cut(s)	853, 885
Bpu1102I	GCTNAGC	1 cut(s)	219
Bpu14I	TTCGAA	2 cut(s)	602, 2003
BpuEI	CTTGAG	2 cut(s)	291, 898
BpuMI	CCSGG	3 cut(s)	318, 678, 1125
Bsa29I	ATCGAT	1 cut(s)	833
BsaAI	YACGTR	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	317, 558, 677
BsaWI	WCCGGW	1 cut(s)	942
Bsc4I	CCNNNNNNNGG	5 cut(s)	83, 106, 784, 1076, 1124
Bse118I	RCCGGY	5 cut(s)	12, 31, 119, 148, 652
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	408
BseAI	TCCGGA	1 cut(s)	942
BseBI	CCWGG	1 cut(s)	398
BseCI	ATCGAT	1 cut(s)	833
BseDI	CCNNGG	3 cut(s)	317, 558, 677
BseGI	GGATG	4 cut(s)	223, 568, 1403, 1972
BseLI	CCNNNNNNNGG	5 cut(s)	83, 106, 784, 1076, 1124
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	3 cut(s)	233, 398, 1117
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	6 cut(s)	258, 294, 303, 718, 761, 1110
BseSI	GKGCMC	1 cut(s)	970
BseXI	GCAGC	6 cut(s)	139, 418, 565, 772, 775, 1507
BseYI	CCCAGC	1 cut(s)	1639
BsgI	GTGCAG	2 cut(s)	1653, 1893
Bsh1236I	CGCG	2 cut(s)	1426, 1743
BshFI	GGCC	7 cut(s)	16, 143, 538, 673, 866, 1415, 1868
BshNI	GGYRCC	1 cut(s)	649
BshVI	ATCGAT	1 cut(s)	833
BsiHKAI	GWGCWC	4 cut(s)	220, 970, 1537, 1993
BslFI	GGGAC	3 cut(s)	760, 837, 1658
BslI	CCNNNNNNNGG	5 cut(s)	83, 106, 784, 1076, 1124
BsmAI	GTCTC	3 cut(s)	441, 683, 1305
BsmBI	CGTCTC	1 cut(s)	683
BsmFI	GGGAC	3 cut(s)	760, 837, 1658
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	7 cut(s)	16, 143, 538, 673, 866, 1415, 1868
Bsp119I	TTCGAA	2 cut(s)	602, 2003
Bsp1286I	GDGCHC	4 cut(s)	220, 970, 1537, 1993
Bsp13I	TCCGGA	1 cut(s)	942
Bsp1407I	TGTACA	1 cut(s)	1110
Bsp143I	GATC	9 cut(s)	830, 958, 1003, 1072, 1570, 1579, 1699, 1780, 1880
Bsp1720I	GCTNAGC	1 cut(s)	219
Bsp68I	TCGCGA	1 cut(s)	1743
BspANI	GGCC	7 cut(s)	16, 143, 538, 673, 866, 1415, 1868
BspCNI	CTCAG	3 cut(s)	232, 397, 1116
BspDI	ATCGAT	1 cut(s)	833
BspEI	TCCGGA	1 cut(s)	942
BspFNI	CGCG	2 cut(s)	1426, 1743
BspHI	TCATGA	1 cut(s)	1582
BspLI	GGNNCC	5 cut(s)	142, 537, 651, 1674, 1701
BspMI	ACCTGC	1 cut(s)	1101
BspPI	GGATC	6 cut(s)	838, 953, 1578, 1694, 1707, 1875
BspT104I	TTCGAA	2 cut(s)	602, 2003
BspT107I	GGYRCC	1 cut(s)	649
BsrBI	CCGCTC	1 cut(s)	1495
BsrDI	GCAATG	1 cut(s)	408
BsrFI	RCCGGY	5 cut(s)	12, 31, 119, 148, 652
BsrGI	TGTACA	1 cut(s)	1110
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	5 cut(s)	12, 31, 119, 148, 652
BssECI	CCNNGG	3 cut(s)	317, 558, 677
BssMI	GATC	9 cut(s)	830, 958, 1003, 1072, 1570, 1579, 1699, 1780, 1880
BssT1I	CCWWGG	1 cut(s)	558
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	3 cut(s)	1299, 1927, 1945
Bst6I	CTCTTC	6 cut(s)	286, 693, 713, 1839, 2005, 2045
BstAPI	GCANNNNNTGC	1 cut(s)	1826
BstAUI	TGTACA	1 cut(s)	1110
BstBAI	YACGTR	1 cut(s)	83
BstBI	TTCGAA	2 cut(s)	602, 2003
BstC8I	GCNNGC	2 cut(s)	150, 1417
BstDEI	CTNAG	3 cut(s)	219, 384, 1103
BstF5I	GGATG	4 cut(s)	223, 568, 1403, 1972
BstFNI	CGCG	2 cut(s)	1426, 1743
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	3 cut(s)	73, 1428, 1831
BstKTI	GATC	9 cut(s)	833, 961, 1006, 1075, 1573, 1582, 1702, 1783, 1883
BstMAI	GTCTC	3 cut(s)	441, 683, 1305
BstMBI	GATC	9 cut(s)	830, 958, 1003, 1072, 1570, 1579, 1699, 1780, 1880
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	4 cut(s)	316, 396, 676, 1123
BstSFI	CTRYAG	2 cut(s)	335, 1558
BstSLI	GKGCMC	1 cut(s)	970
BstUI	CGCG	2 cut(s)	1426, 1743
BstV1I	GCAGC	6 cut(s)	139, 418, 565, 772, 775, 1507
BstV2I	GAAGAC	2 cut(s)	803, 1158
BstX2I	RGATCY	4 cut(s)	958, 1072, 1699, 1880
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstYI	RGATCY	4 cut(s)	958, 1072, 1699, 1880
Bsu15I	ATCGAT	1 cut(s)	833
BsuI	GTATCC	1 cut(s)	1074
BsuRI	GGCC	7 cut(s)	16, 143, 538, 673, 866, 1415, 1868
BsuTUI	ATCGAT	1 cut(s)	833
BtgZI	GCGATG	1 cut(s)	150
BtsCI	GGATG	4 cut(s)	223, 568, 1403, 1972
BtsI	GCAGTG	2 cut(s)	1188, 1539
BtsIMutI	CAGTG	4 cut(s)	1111, 1188, 1539, 1884
BtuMI	TCGCGA	1 cut(s)	1743
BveI	ACCTGC	1 cut(s)	1101
Cac8I	GCNNGC	2 cut(s)	150, 1417
CaiI	CAGNNNCTG	1 cut(s)	766
CciI	TCATGA	1 cut(s)	1582
CfoI	GCGC	3 cut(s)	73, 1428, 1831
Cfr10I	RCCGGY	5 cut(s)	12, 31, 119, 148, 652
Cfr13I	GGNCC	8 cut(s)	141, 206, 536, 671, 864, 1127, 1672, 1866
ClaI	ATCGAT	1 cut(s)	833
CseI	GACGC	1 cut(s)	1356
Csp6I	GTAC	4 cut(s)	250, 358, 1111, 1666
CspCI	CAANNNNNGTGG	2 cut(s)	1777, 1812
CviQI	GTAC	4 cut(s)	250, 358, 1111, 1666
DdeI	CTNAG	3 cut(s)	219, 384, 1103
DpnI	GATC	9 cut(s)	832, 960, 1005, 1074, 1572, 1581, 1701, 1782, 1882
DpnII	GATC	9 cut(s)	830, 958, 1003, 1072, 1570, 1579, 1699, 1780, 1880
DrdI	GACNNNNNNGTC	1 cut(s)	1511
DseDI	GACNNNNNNGTC	1 cut(s)	1511
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	6 cut(s)	286, 693, 713, 1839, 2005, 2045
EarI	CTCTTC	6 cut(s)	286, 693, 713, 1839, 2005, 2045
EciI	GGCGGA	3 cut(s)	30, 261, 1948
Ecl136II	GAGCTC	2 cut(s)	218, 1991
Eco130I	CCWWGG	1 cut(s)	558
Eco147I	AGGCCT	1 cut(s)	1415
Eco24I	GRGCYC	2 cut(s)	220, 1993
Eco47I	GGWCC	3 cut(s)	206, 1127, 1672
Eco53kI	GAGCTC	2 cut(s)	218, 1991
Eco57I	CTGAAG	2 cut(s)	788, 1737
Eco72I	CACGTG	1 cut(s)	83
EcoICRI	GAGCTC	2 cut(s)	218, 1991
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	558
EcoT38I	GRGCYC	2 cut(s)	220, 1993
ErhI	CCWWGG	1 cut(s)	558
Esp3I	CGTCTC	1 cut(s)	683
FalI	AAGNNNNNCTT	2 cut(s)	2019, 2051
FaqI	GGGAC	3 cut(s)	760, 837, 1658
FauI	CCCGC	6 cut(s)	30, 261, 474, 501, 579, 1323
FauNDI	CATATG	2 cut(s)	804, 1705
FbaI	TGATCA	1 cut(s)	1579
FokI	GGATG	4 cut(s)	210, 575, 1390, 1979
FriOI	GRGCYC	2 cut(s)	220, 1993
FspBI	CTAG	3 cut(s)	213, 441, 1131
GlaI	GCGC	3 cut(s)	72, 1427, 1830
GsaI	CCCAGC	1 cut(s)	1643
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	7 cut(s)	16, 143, 538, 673, 866, 1415, 1868
HgaI	GACGC	1 cut(s)	1356
HhaI	GCGC	3 cut(s)	73, 1428, 1831
Hin6I	GCGC	3 cut(s)	71, 1426, 1829
HinP1I	GCGC	3 cut(s)	71, 1426, 1829
HincII	GTYRAC	1 cut(s)	1941
HindII	GTYRAC	1 cut(s)	1941
HindIII	AAGCTT	2 cut(s)	1055, 1844
HinfI	GANTC	9 cut(s)	55, 278, 616, 773, 1286, 1468, 1547, 1595, 1712
HphI	GGTGA	8 cut(s)	176, 221, 386, 667, 896, 1777, 1778, 2102
Hpy166II	GTNNAC	3 cut(s)	968, 1111, 1941
Hpy188I	TCNGA	5 cut(s)	1211, 1552, 1579, 1717, 2107
Hpy188III	TCNNGA	9 cut(s)	846, 877, 943, 956, 1088, 1583, 1649, 1742, 1917
Hpy8I	GTNNAC	3 cut(s)	968, 1111, 1941
HpyAV	CCTTC	6 cut(s)	168, 763, 814, 1333, 1686, 1923
HpyCH4III	ACNGT	3 cut(s)	1299, 1927, 1945
HpyCH4IV	ACGT	2 cut(s)	82, 1822
HpyF3I	CTNAG	3 cut(s)	219, 384, 1103
HpySE526I	ACGT	2 cut(s)	82, 1822
HspAI	GCGC	3 cut(s)	71, 1426, 1829
Kpn2I	TCCGGA	1 cut(s)	942
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
Ksp22I	TGATCA	1 cut(s)	1579
Kzo9I	GATC	9 cut(s)	830, 958, 1003, 1072, 1570, 1579, 1699, 1780, 1880
LmnI	GCTCC	5 cut(s)	160, 316, 569, 1540, 1988
Lsp1109I	GCAGC	6 cut(s)	139, 418, 565, 772, 775, 1507
LweI	GCATC	5 cut(s)	232, 1215, 1412, 1957, 2020
MaeI	CTAG	3 cut(s)	213, 441, 1131
MaeII	ACGT	2 cut(s)	82, 1822
MaeIII	GTNAC	7 cut(s)	392, 843, 1183, 1624, 1766, 1921, 2090
MalI	GATC	9 cut(s)	832, 960, 1005, 1074, 1572, 1581, 1701, 1782, 1882
MbiI	CCGCTC	1 cut(s)	1495
MboI	GATC	9 cut(s)	830, 958, 1003, 1072, 1570, 1579, 1699, 1780, 1880
MfeI	CAATTG	1 cut(s)	1953
MflI	RGATCY	4 cut(s)	958, 1072, 1699, 1880
MhlI	GDGCHC	4 cut(s)	220, 970, 1537, 1993
MlyI	GAGTC	2 cut(s)	272, 782
MmeI	TCCRAC	1 cut(s)	1548
MroI	TCCGGA	1 cut(s)	942
MroNI	GCCGGC	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	1902
MseI	TTAA	3 cut(s)	1194, 1254, 1368
MslI	CAYNNNNRTG	3 cut(s)	925, 986, 2067
MspA1I	CMGCKG	1 cut(s)	766
MspR9I	CCNGG	4 cut(s)	318, 398, 678, 1125
MunI	CAATTG	1 cut(s)	1953
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	2 cut(s)	1426, 1743
NaeI	GCCGGC	1 cut(s)	150
NciI	CCSGG	3 cut(s)	318, 678, 1125
NdeI	CATATG	2 cut(s)	804, 1705
NdeII	GATC	9 cut(s)	830, 958, 1003, 1072, 1570, 1579, 1699, 1780, 1880
NgoMIV	GCCGGC	1 cut(s)	148
NlaIV	GGNNCC	5 cut(s)	142, 537, 651, 1674, 1701
NmuCI	GTSAC	6 cut(s)	392, 843, 1183, 1766, 1921, 2090
NruI	TCGCGA	1 cut(s)	1743
NspV	TTCGAA	2 cut(s)	602, 2003
PagI	TCATGA	1 cut(s)	1582
PceI	AGGCCT	1 cut(s)	1415
PcsI	WCGNNNNNNNCGW	1 cut(s)	1028
PctI	GAATGC	1 cut(s)	598
PdiI	GCCGGC	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	1902
PfeI	GAWTC	7 cut(s)	55, 616, 1286, 1468, 1547, 1595, 1712
PflMI	CCANNNNNTGG	1 cut(s)	1076
PleI	GAGTC	2 cut(s)	272, 781
PmaCI	CACGTG	1 cut(s)	83
PmlI	CACGTG	1 cut(s)	83
PpsI	GAGTC	2 cut(s)	272, 781
Ppu21I	YACGTR	1 cut(s)	83
PsiI	TTATAA	2 cut(s)	114, 1620
Psp124BI	GAGCTC	2 cut(s)	220, 1993
Psp6I	CCWGG	1 cut(s)	396
PspCI	CACGTG	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	1639
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	5 cut(s)	142, 537, 651, 1674, 1701
PspPI	GGNCC	8 cut(s)	141, 206, 536, 671, 864, 1127, 1672, 1866
PstNI	CAGNNNCTG	1 cut(s)	766
PsuI	RGATCY	4 cut(s)	958, 1072, 1699, 1880
PvuII	CAGCTG	1 cut(s)	766
RruI	TCGCGA	1 cut(s)	1743
RsaI	GTAC	4 cut(s)	251, 359, 1112, 1667
RsaNI	GTAC	4 cut(s)	250, 358, 1111, 1666
RseI	CAYNNNNRTG	3 cut(s)	925, 986, 2067
SacI	GAGCTC	2 cut(s)	220, 1993
SaqAI	TTAA	3 cut(s)	1194, 1254, 1368
Sau3AI	GATC	9 cut(s)	830, 958, 1003, 1072, 1570, 1579, 1699, 1780, 1880
Sau96I	GGNCC	8 cut(s)	141, 206, 536, 671, 864, 1127, 1672, 1866
SchI	GAGTC	2 cut(s)	272, 782
ScrFI	CCNGG	4 cut(s)	318, 398, 678, 1125
SduI	GDGCHC	4 cut(s)	220, 970, 1537, 1993
SfaNI	GCATC	5 cut(s)	232, 1215, 1412, 1957, 2020
SfcI	CTRYAG	2 cut(s)	335, 1558
SfuI	TTCGAA	2 cut(s)	602, 2003
SinI	GGWCC	3 cut(s)	206, 1127, 1672
SmiMI	CAYNNNNRTG	3 cut(s)	925, 986, 2067
SmlI	CTYRAG	2 cut(s)	306, 877
SmoI	CTYRAG	2 cut(s)	306, 877
SseBI	AGGCCT	1 cut(s)	1415
SspMI	CTAG	3 cut(s)	213, 441, 1131
SstI	GAGCTC	2 cut(s)	220, 1993
StuI	AGGCCT	1 cut(s)	1415
StyD4I	CCNGG	4 cut(s)	316, 396, 676, 1123
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	3 cut(s)	1299, 1927, 1945
TaiI	ACGT	2 cut(s)	85, 1825
TaqI	TCGA	5 cut(s)	528, 602, 833, 1896, 2003
TatI	WGTACW	2 cut(s)	357, 1110
TfiI	GAWTC	7 cut(s)	55, 616, 1286, 1468, 1547, 1595, 1712
Tru1I	TTAA	3 cut(s)	1194, 1254, 1368
Tru9I	TTAA	3 cut(s)	1194, 1254, 1368
TscAI	CASTG	4 cut(s)	1111, 1188, 1546, 1891
TseFI	GTSAC	6 cut(s)	392, 843, 1183, 1766, 1921, 2090
TseI	GCWGC	6 cut(s)	152, 406, 578, 760, 763, 1520
Tsp45I	GTSAC	6 cut(s)	392, 843, 1183, 1766, 1921, 2090
TspGWI	ACGGA	3 cut(s)	633, 707, 1244
TspRI	CASTG	4 cut(s)	1111, 1188, 1546, 1891
Van91I	CCANNNNNTGG	1 cut(s)	1076
VneI	GTGCAC	1 cut(s)	966
VpaK11BI	GGWCC	3 cut(s)	206, 1127, 1672
XapI	RAATTY	5 cut(s)	475, 781, 938, 1655, 1999
XmnI	GAANNNNTTC	1 cut(s)	1902
XspI	CTAG	3 cut(s)	213, 441, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.