Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005711

Physical Location & Seq

Genomic Coordinates Forward (+)

22799324 .. 22803876

Gene Structure 4553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1191000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2286 bp

ATGGGCGTCGACATGTCTAACAATCCACCAACTTCTCGGACCAAGGACTTCTTTGCTTCCCCAGCCCTCTCCCTCTCCCTCGCTGGGATTTTTCGTGATGCTGGGGCGGCCGCAAGCAGGGAGGTGGAGGAAGGAGATGAGGGCAGCGGTGGAGGCGGAAGTGCAGCTGTAGGGAGTGTCCGCCGGAGAGAAGACACAACGGAGATTAGCAGCGAGAACTCGGGCCCTGGGAGGTCGAGATCAGAAGATGAATTTGACGGAGAAGGAGAGCATGACGAAGATGATGTTGATGGAGACAACAAGAACAAGAAGAAGAAGAGGAAAAAGTACCATAGGCACACCACCGAGCAAATCCGAGAAATGGAAGCGTTGTTCAAAGAATCACCACATCCTGATGAGAAGCAGAGGCAGCAACTGAGCAAGCAATTAGGCCTTGCTCCAAGGCAGGTCAAGTTTTGGTTTCAGAATCGTCGAACCCAAATCAAGGCTATACAGGAACGCCACGAAAACTCTCTGTTGAAAGGTGAAATGGAGAAACTCCGCGATGAAAGTAAGGCAATGAGGGAGCAGATAAACAAAGCATGCTGCCCCAACTGTGGCACTGCAACCACTAGCCGGGATGCCACCCTCACGACCGAGGAGCAACAACTGCGAATCGAAAATGCCAGACTCAAATCCGAGGTCGAAAAACTCAGAGCAGCTCTTGTAAAATACCCTCCCGGGACATCCTCTCCTTCCTGCTCCGCTGGTCAAGACCAGGAGAATAGAAGCTCTTTGGACTTCTACACTGGAATCTTCGGTCTTGAGGAGTCCAGGATTATGGAGATAGTGAATCAAGCAATGGAGGAGCTTCAGAAGATGGCTACTGCAGGCGAACCACTCTGGGTTCGGAGTGTGGAGACTGGCCGTGAAATACTTAATTACGATGAGTACATCAAAGAGTTCAACATTGAAGTTCCTGGGAATGGGCGGCCAAAGAGATCCATCGAGGCCTCCAGAGAGACTGGGTTGGTGTTTGTTGACCTTCCGCGACTAGTTCAAAGTTTCATGGATGTGAATCAATGGAAGGAAATGTTTCCATGCATGATCTCGAAGGCGGCAACTGTTGATGTTATTAACAATGGTGAAGGAGACGACAGAAATGGTGCAGTACAATTGATGTTTGCAGAGCTGCAAATGCTTACGCCCTTGGTTCCCACTAGAGAAGTGTACTTCGTTCGATGTTGCAAGCAATTGAGTCCTGAACAATGGGCTATTGTTGATGTTTCGATTGACAAAGTCGAAGATAACATAGATGCATCCTTGGTGAAATGCAGGAAGCGTCCCTCTGGATGCATCATCGAGGACAAAACAAATGGCCACTGCAAGGTGATCTGGGTGGAACACCTAGAATGCCAGAGGAGCACAATACAGACCATGTACCGAACCATTGTCAACAGCGGTCTAGCATTTGGAGCAAGACATTGGGTAGCAACACTGCAACTGCAATGCGAACGGCTTGTTTTCTTCATGGCAACCAATGTTCCCATGAAGGATTCAGCTGGTGTGGCCACCCTTGCTGGGAGAAAAAGCATTCTAAAATTGGCACAAAGAATGACAGCCAGCTTTTGTCGTGCAATCGGAGCATCAAGCTACCATACCTGGACCAAGATCTCAAGCAAAACAGGGGACGACATAAGGATTGCCTCCAGAAAGAACTCGAACGACCCAGGAGAGCCTCTCGGTGTGATTTTGTGTGCTGTTTCTTCAGTATGGCTGCCTGTCTCTCCTTATCTGCTCTTCGATTTCTTAAGAGACGAGACTCGCAGGAATGAGTGGGACATTATGCTAAACGGAGGACCAGCTCAAACAATTGCAAACCTATCCAAGGGACAAGATCGTGGCAATGCTGTTACAATCCAAAGCATGAAATCAAAAGAGAACAGCATGTGGATACTGCAAGATACCTGCATAAACTCTTACGAGTCGATGGTGGTCTATGCTCCAGTGGATATCCCAGGAATGCAGTCGGTGATGACTGGATGCGATGCAAGCAATATAGCCATATTGCCTTCAGGGTTCTCGATTCTTCCTGATGGACTGGAGTCGAGGCCGATGGTCCTCACATCCAGCCAAGAAGACAGGAGCAGTGAAGGAGGAACTCTGCTGACAGCAGCATTTCAAGTCTTGACAAATTCCTCCACCACAGCCAACAAGCTAACAATGGAGTCTGTGGAGTCTGTCAACACTCTAATATCATGTACTTTGAGAAATATTAAAACAAGCTTGCAGTGTGAGGATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

762

Amino Acids

84.54

Weight (kDa)

5.58

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	107 - 162	3.6e-19	Homeodomain
START	PF01852	276 - 499	5.3e-53	START domain
PDF2_C	PF25797	518 - 758	1.5e-108	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79840 AT1G79840 AT1G79840 AT1G79840 AT1G79840 AT1G79840
fragaria_vesca	FvH4_6g31780 FvH4_6g31780 FvH4_6g31780 FvH4_6g31780 FvH4_6g31780 FvH4_6g31780
malus_domestica	MD09G1209300.v1.1 MD17G1191000.v1.1
prunus_persica	Prupe.3G067200_v2.0.a1
pyrus_communis	pycom09g12540 pycom17g19810
rosa_chinensis	RchiOBHm_Chr2g0138951
rosa_laevigata	RLG00000019771
rosa_multiflora	Rmu_sc0001376.1_g000004
rosa_roxburghii	Rroxscaffold_2G00105840
rosa_rugosa	Rorug02G0353500 Rorug02G0353600
rosa_samantha	Rh2AG403500 Rh2BG413900 Rh2CG389600 Rh2DG423700
rosa_wichuraiana	Rw2G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	436, 1955
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	2 cut(s)	543, 1030
AclWI	GGATC	1 cut(s)	975
AcoI	YGGCCR	5 cut(s)	108, 904, 971, 1357, 1548
AcsI	RAATTY	2 cut(s)	251, 2173
AcuI	CTGAAG	3 cut(s)	836, 1731, 2037
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	6 cut(s)	329, 932, 1152, 1211, 1421, 2242
AflII	CTTAAG	1 cut(s)	1789
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	6 cut(s)	376, 520, 946, 953, 1040, 2162
AhlI	ACTAGT	1 cut(s)	1033
AjnI	CCWGG	7 cut(s)	226, 756, 812, 958, 1640, 1708, 1996
AloI	GAACNNNNNNTCC	2 cut(s)	356, 388
Alw21I	GWGCWC	1 cut(s)	1406
Alw26I	GTCTC	7 cut(s)	288, 893, 995, 1125, 1768, 1788, 1793
AlwI	GGATC	1 cut(s)	975
AlwNI	CAGNNNCTG	1 cut(s)	415
Ama87I	CYCGRG	2 cut(s)	220, 719
AoxI	GGCC	9 cut(s)	108, 223, 430, 904, 971, 990, 1357, 1548, 2090
ApaI	GGGCCC	1 cut(s)	227
ApeKI	GCWGC	9 cut(s)	144, 164, 210, 409, 585, 698, 1171, 1756, 2153
ApoI	RAATTY	2 cut(s)	251, 2173
ArsI	GACNNNNNNTTYG	2 cut(s)	666, 698
Asp700I	GAANNNNTTC	1 cut(s)	1074
AspS9I	GGNCC	6 cut(s)	39, 223, 224, 1644, 1838, 2098
AsuC2I	CCSGG	3 cut(s)	617, 720, 721
AsuHPI	GGTGA	6 cut(s)	375, 536, 1136, 1318, 1381, 2023
AvaI	CYCGRG	2 cut(s)	220, 719
AvaII	GGWCC	4 cut(s)	39, 1644, 1838, 2098
BaeGI	GKGCMC	1 cut(s)	227
BalI	TGGCCA	2 cut(s)	1359, 1550
BanII	GRGCYC	1 cut(s)	227
BbsI	GAAGAC	2 cut(s)	198, 2124
Bbv12I	GWGCWC	1 cut(s)	1406
BbvI	GCAGC	9 cut(s)	156, 176, 222, 421, 572, 710, 1158, 1743, 2165
BccI	CCATC	7 cut(s)	284, 853, 992, 1963, 2069, 2089, 2273
BceAI	ACGGC	2 cut(s)	891, 1511
BciT130I	CCWGG	7 cut(s)	228, 758, 814, 960, 1642, 1710, 1998
BciVI	GTATCC	1 cut(s)	1926
BcnI	CCSGG	3 cut(s)	617, 720, 721
BcoDI	GTCTC	7 cut(s)	288, 893, 995, 1125, 1768, 1788, 1793
BcuI	ACTAGT	1 cut(s)	1033
BfaI	CTAG	5 cut(s)	612, 1034, 1200, 1388, 1445
BfmI	CTRYAG	2 cut(s)	168, 867
BfrI	CTTAAG	1 cut(s)	1789
BfuAI	ACCTGC	2 cut(s)	436, 1955
BfuI	GTATCC	1 cut(s)	1926
BglII	AGATCT	1 cut(s)	1650
Bme18I	GGWCC	4 cut(s)	39, 1644, 1838, 2098
BmeT110I	CYCGRG	2 cut(s)	220, 719
BmgT120I	GGNCC	6 cut(s)	39, 223, 224, 1644, 1838, 2098
BmiI	GGNNCC	2 cut(s)	225, 1194
BmrI	ACTGGG	1 cut(s)	1014
BmsI	GCATC	9 cut(s)	88, 610, 1285, 1307, 1322, 1344, 1634, 2012, 2017
BmuI	ACTGGG	1 cut(s)	1014
BoxI	GACNNNNGTC	1 cut(s)	2083
BpiI	GAAGAC	2 cut(s)	198, 2124
BplI	GAGNNNNNCTC	2 cut(s)	1704, 1736
BpmI	CTGGAG	4 cut(s)	979, 1672, 1968, 2102
BpuEI	CTTGAG	2 cut(s)	824, 1639
BpuMI	CCSGG	3 cut(s)	617, 720, 721
BsaBI	GATNNNNATC	1 cut(s)	1056
BsaHI	GRCGYC	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	715, 745
Bse1I	ACTGG	6 cut(s)	793, 907, 1009, 1985, 2023, 2085
Bse3DI	GCAATG	4 cut(s)	564, 846, 1493, 1891
Bse8I	GATNNNNATC	1 cut(s)	1056
BseBI	CCWGG	7 cut(s)	228, 758, 814, 960, 1642, 1710, 1998
BseGI	GGATG	9 cut(s)	388, 625, 725, 1057, 1298, 1337, 2027, 2105, 2284
BseJI	GATNNNNATC	1 cut(s)	1056
BseMI	GCAATG	4 cut(s)	564, 846, 1493, 1891
BseMII	CTCAG	2 cut(s)	407, 706
BseNI	ACTGG	6 cut(s)	793, 907, 1009, 1985, 2023, 2085
BseRI	GAGGAG	4 cut(s)	653, 821, 860, 1414
BseSI	GKGCMC	1 cut(s)	227
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	9 cut(s)	156, 176, 222, 421, 572, 710, 1158, 1743, 2165
BseYI	CCCAGC	4 cut(s)	61, 83, 101, 1559
BsgI	GTGCAG	2 cut(s)	183, 1167
Bsh1236I	CGCG	2 cut(s)	543, 1030
Bsh1285I	CGRYCG	2 cut(s)	111, 636
BshFI	GGCC	9 cut(s)	110, 225, 432, 906, 973, 992, 1359, 1550, 2092
BsiEI	CGRYCG	2 cut(s)	111, 636
BsiHKAI	GWGCWC	1 cut(s)	1406
BsiHKCI	CYCGRG	2 cut(s)	220, 719
BsiSI	CCGG	3 cut(s)	184, 616, 720
BslFI	GGGAC	5 cut(s)	736, 1308, 1682, 1832, 1884
BsmAI	GTCTC	7 cut(s)	288, 893, 995, 1125, 1768, 1788, 1793
BsmBI	CGTCTC	2 cut(s)	1125, 1788
BsmFI	GGGAC	5 cut(s)	736, 1308, 1682, 1832, 1884
BsmI	GAATGC	3 cut(s)	1397, 1572, 2007
BsnI	GGCC	9 cut(s)	110, 225, 432, 906, 973, 992, 1359, 1550, 2092
BsoBI	CYCGRG	2 cut(s)	220, 719
Bsp120I	GGGCCC	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	227, 1406
Bsp143I	GATC	6 cut(s)	239, 980, 1086, 1371, 1650, 1876
BspANI	GGCC	9 cut(s)	110, 225, 432, 906, 973, 992, 1359, 1550, 2092
BspCNI	CTCAG	2 cut(s)	408, 705
BspFNI	CGCG	2 cut(s)	543, 1030
BspLI	GGNNCC	2 cut(s)	225, 1194
BspMAI	CTGCAG	1 cut(s)	871
BspMI	ACCTGC	2 cut(s)	436, 1955
BspPI	GGATC	1 cut(s)	975
BspQI	GCTCTTC	1 cut(s)	1784
BspTI	CTTAAG	1 cut(s)	1789
BsrDI	GCAATG	4 cut(s)	564, 846, 1493, 1891
BsrI	ACTGG	6 cut(s)	793, 907, 1009, 1985, 2023, 2085
BssMI	GATC	6 cut(s)	239, 980, 1086, 1371, 1650, 1876
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	5 cut(s)	42, 440, 1188, 1302, 1866
Bst2UI	CCWGG	7 cut(s)	228, 758, 814, 960, 1642, 1710, 1998
Bst4CI	ACNGT	2 cut(s)	596, 1105
Bst6I	CTCTTC	2 cut(s)	311, 1784
BstACI	GRCGYC	1 cut(s)	6
BstAFI	CTTAAG	1 cut(s)	1789
BstAPI	GCANNNNNTGC	1 cut(s)	649
BstC8I	GCNNGC	8 cut(s)	115, 422, 583, 871, 1229, 1603, 2032, 2267
BstDEI	CTNAG	2 cut(s)	416, 692
BstENI	CCTNNNNNAGG	1 cut(s)	1865
BstF5I	GGATG	9 cut(s)	388, 625, 725, 1057, 1298, 1337, 2027, 2105, 2284
BstFNI	CGCG	2 cut(s)	543, 1030
BstKTI	GATC	6 cut(s)	242, 983, 1089, 1374, 1653, 1879
BstMAI	GTCTC	7 cut(s)	288, 893, 995, 1125, 1768, 1788, 1793
BstMBI	GATC	6 cut(s)	239, 980, 1086, 1371, 1650, 1876
BstMCI	CGRYCG	2 cut(s)	111, 636
BstNI	CCWGG	7 cut(s)	228, 758, 814, 960, 1642, 1710, 1998
BstNSI	RCATGY	3 cut(s)	16, 585, 1930
BstPAI	GACNNNNGTC	1 cut(s)	2083
BstSFI	CTRYAG	2 cut(s)	168, 867
BstSLI	GKGCMC	1 cut(s)	227
BstUI	CGCG	2 cut(s)	543, 1030
BstV1I	GCAGC	9 cut(s)	156, 176, 222, 421, 572, 710, 1158, 1743, 2165
BstV2I	GAAGAC	2 cut(s)	198, 2124
BstX2I	RGATCY	2 cut(s)	980, 1650
BstXI	CCANNNNNNTGG	1 cut(s)	820
BstYI	RGATCY	2 cut(s)	980, 1650
BstZI	CGGCCG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	1926
BsuRI	GGCC	9 cut(s)	110, 225, 432, 906, 973, 992, 1359, 1550, 2092
BtgZI	GCGATG	2 cut(s)	558, 2040
BtsCI	GGATG	9 cut(s)	388, 625, 725, 1057, 1298, 1337, 2027, 2105, 2284
BtsI	GCAGTG	5 cut(s)	600, 1360, 1475, 2134, 2276
BtsIMutI	CAGTG	7 cut(s)	600, 786, 1360, 1475, 1992, 2134, 2276
BveI	ACCTGC	2 cut(s)	436, 1955
Cac8I	GCNNGC	8 cut(s)	115, 422, 583, 871, 1229, 1603, 2032, 2267
CaiI	CAGNNNCTG	1 cut(s)	415
CciNI	GCGGCCGC	1 cut(s)	108
Cfr13I	GGNCC	6 cut(s)	39, 223, 224, 1644, 1838, 2098
Cfr9I	CCCGGG	1 cut(s)	719
CseI	GACGC	1 cut(s)	1310
Csp6I	GTAC	6 cut(s)	328, 931, 1151, 1210, 1420, 2241
CviQI	GTAC	6 cut(s)	328, 931, 1151, 1210, 1420, 2241
DdeI	CTNAG	2 cut(s)	416, 692
DpnI	GATC	6 cut(s)	241, 982, 1088, 1373, 1652, 1878
DpnII	GATC	6 cut(s)	239, 980, 1086, 1371, 1650, 1876
EaeI	YGGCCR	5 cut(s)	108, 904, 971, 1357, 1548
EagI	CGGCCG	1 cut(s)	108
Eam1104I	CTCTTC	2 cut(s)	311, 1784
EarI	CTCTTC	2 cut(s)	311, 1784
EciI	GGCGGA	2 cut(s)	170, 171
EclXI	CGGCCG	1 cut(s)	108
Eco130I	CCWWGG	5 cut(s)	42, 440, 1188, 1302, 1866
Eco147I	AGGCCT	2 cut(s)	432, 992
Eco24I	GRGCYC	1 cut(s)	227
Eco32I	GATATC	1 cut(s)	1993
Eco47I	GGWCC	4 cut(s)	39, 1644, 1838, 2098
Eco52I	CGGCCG	1 cut(s)	108
Eco57I	CTGAAG	3 cut(s)	836, 1731, 2037
Eco88I	CYCGRG	2 cut(s)	220, 719
EcoNI	CCTNNNNNAGG	1 cut(s)	1865
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	7 cut(s)	226, 756, 812, 958, 1640, 1708, 1996
EcoRV	GATATC	1 cut(s)	1993
EcoT14I	CCWWGG	5 cut(s)	42, 440, 1188, 1302, 1866
EcoT22I	ATGCAT	3 cut(s)	1085, 1300, 1337
EcoT38I	GRGCYC	1 cut(s)	227
ErhI	CCWWGG	5 cut(s)	42, 440, 1188, 1302, 1866
Esp3I	CGTCTC	2 cut(s)	1125, 1788
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	5 cut(s)	736, 1308, 1682, 1832, 1884
FblI	GTMKAC	1 cut(s)	9
FokI	GGATG	8 cut(s)	375, 632, 712, 1064, 1285, 1344, 2034, 2092
FriOI	GRGCYC	1 cut(s)	227
FspBI	CTAG	5 cut(s)	612, 1034, 1200, 1388, 1445
GsaI	CCCAGC	4 cut(s)	65, 87, 105, 1563
GsuI	CTGGAG	4 cut(s)	979, 1672, 1968, 2102
HaeIII	GGCC	9 cut(s)	110, 225, 432, 906, 973, 992, 1359, 1550, 2092
HapII	CCGG	3 cut(s)	184, 616, 720
HgaI	GACGC	1 cut(s)	1310
Hin1I	GRCGYC	1 cut(s)	6
HincII	GTYRAC	4 cut(s)	10, 1021, 1435, 2224
HindII	GTYRAC	4 cut(s)	10, 1021, 1435, 2224
HindIII	AAGCTT	1 cut(s)	2263
HpaII	CCGG	3 cut(s)	184, 616, 720
HphI	GGTGA	6 cut(s)	375, 536, 1136, 1318, 1381, 2023
Hpy166II	GTNNAC	5 cut(s)	10, 1021, 1210, 1435, 2224
Hpy188I	TCNGA	9 cut(s)	39, 244, 356, 465, 679, 695, 855, 891, 1622
Hpy8I	GTNNAC	5 cut(s)	10, 1021, 1210, 1435, 2224
Hpy99I	CGWCG	2 cut(s)	11, 474
HpyCH4III	ACNGT	2 cut(s)	596, 1105
HpyF3I	CTNAG	2 cut(s)	416, 692
Hsp92I	GRCGYC	1 cut(s)	6
Kzo9I	GATC	6 cut(s)	239, 980, 1086, 1371, 1650, 1876
LguI	GCTCTTC	1 cut(s)	1784
Lsp1109I	GCAGC	9 cut(s)	156, 176, 222, 421, 572, 710, 1158, 1743, 2165
LweI	GCATC	9 cut(s)	88, 610, 1285, 1307, 1322, 1344, 1634, 2012, 2017
MaeI	CTAG	5 cut(s)	612, 1034, 1200, 1388, 1445
MaeIII	GTNAC	1 cut(s)	1891
MalI	GATC	6 cut(s)	241, 982, 1088, 1373, 1652, 1878
MboI	GATC	6 cut(s)	239, 980, 1086, 1371, 1650, 1876
MfeI	CAATTG	3 cut(s)	1154, 1232, 1851
MflI	RGATCY	2 cut(s)	980, 1650
MhlI	GDGCHC	2 cut(s)	227, 1406
MlsI	TGGCCA	2 cut(s)	1359, 1550
MluCI	AATT	8 cut(s)	251, 425, 919, 1154, 1232, 1580, 1851, 2173
MluNI	TGGCCA	2 cut(s)	1359, 1550
MlyI	GAGTC	8 cut(s)	663, 818, 1246, 1795, 1973, 2093, 2216, 2225
Mox20I	TGGCCA	2 cut(s)	1359, 1550
Mph1103I	ATGCAT	3 cut(s)	1085, 1300, 1337
MroXI	GAANNNNTTC	1 cut(s)	1074
MscI	TGGCCA	2 cut(s)	1359, 1550
MseI	TTAA	4 cut(s)	918, 1116, 1790, 2256
MslI	CAYNNNNRTG	2 cut(s)	393, 1052
Msp20I	TGGCCA	2 cut(s)	1359, 1550
MspA1I	CMGCKG	5 cut(s)	147, 167, 746, 1440, 1541
MspCI	CTTAAG	1 cut(s)	1789
MspI	CCGG	3 cut(s)	184, 616, 720
MunI	CAATTG	3 cut(s)	1154, 1232, 1851
Mva1269I	GAATGC	3 cut(s)	1397, 1572, 2007
MvaI	CCWGG	7 cut(s)	228, 758, 814, 960, 1642, 1710, 1998
MvnI	CGCG	2 cut(s)	543, 1030
NciI	CCSGG	3 cut(s)	617, 720, 721
NdeII	GATC	6 cut(s)	239, 980, 1086, 1371, 1650, 1876
NlaIV	GGNNCC	2 cut(s)	225, 1194
NotI	GCGGCCGC	1 cut(s)	108
NsiI	ATGCAT	3 cut(s)	1085, 1300, 1337
NspI	RCATGY	3 cut(s)	16, 585, 1930
PaeI	GCATGC	1 cut(s)	585
PasI	CCCWGGG	1 cut(s)	227
PceI	AGGCCT	2 cut(s)	432, 992
PciI	ACATGT	1 cut(s)	12
PciSI	GCTCTTC	1 cut(s)	1784
PctI	GAATGC	3 cut(s)	1397, 1572, 2007
PdmI	GAANNNNTTC	1 cut(s)	1074
PfeI	GAWTC	8 cut(s)	380, 466, 654, 792, 832, 1057, 1535, 2065
PflFI	GACNNNGTC	1 cut(s)	1277
PfoI	TCCNGGA	1 cut(s)	812
PleI	GAGTC	8 cut(s)	663, 817, 1245, 1795, 1972, 2092, 2215, 2224
PpsI	GAGTC	8 cut(s)	663, 817, 1245, 1795, 1972, 2092, 2215, 2224
PscI	ACATGT	1 cut(s)	12
PshAI	GACNNNNGTC	1 cut(s)	2083
Psp6I	CCWGG	7 cut(s)	226, 756, 812, 958, 1640, 1708, 1996
PspFI	CCCAGC	4 cut(s)	61, 83, 101, 1559
PspGI	CCWGG	7 cut(s)	226, 756, 812, 958, 1640, 1708, 1996
PspN4I	GGNNCC	2 cut(s)	225, 1194
PspOMI	GGGCCC	1 cut(s)	223
PspPI	GGNCC	6 cut(s)	39, 223, 224, 1644, 1838, 2098
PstI	CTGCAG	1 cut(s)	871
PstNI	CAGNNNCTG	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	980, 1650
PsyI	GACNNNGTC	1 cut(s)	1277
PvuII	CAGCTG	2 cut(s)	167, 1541
RsaI	GTAC	6 cut(s)	329, 932, 1152, 1211, 1421, 2242
RsaNI	GTAC	6 cut(s)	328, 931, 1151, 1210, 1420, 2241
RseI	CAYNNNNRTG	2 cut(s)	393, 1052
SalI	GTCGAC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	1784
SaqAI	TTAA	4 cut(s)	918, 1116, 1790, 2256
Sau3AI	GATC	6 cut(s)	239, 980, 1086, 1371, 1650, 1876
Sau96I	GGNCC	6 cut(s)	39, 223, 224, 1644, 1838, 2098
SchI	GAGTC	8 cut(s)	663, 818, 1246, 1795, 1973, 2093, 2216, 2225
SduI	GDGCHC	2 cut(s)	227, 1406
SfaNI	GCATC	9 cut(s)	88, 610, 1285, 1307, 1322, 1344, 1634, 2012, 2017
SfcI	CTRYAG	2 cut(s)	168, 867
SinI	GGWCC	4 cut(s)	39, 1644, 1838, 2098
SmaI	CCCGGG	1 cut(s)	721
SmiMI	CAYNNNNRTG	2 cut(s)	393, 1052
SmlI	CTYRAG	3 cut(s)	803, 1654, 1789
SmoI	CTYRAG	3 cut(s)	803, 1654, 1789
SpeI	ACTAGT	1 cut(s)	1033
SphI	GCATGC	1 cut(s)	585
Sse9I	AATT	8 cut(s)	251, 425, 919, 1154, 1232, 1580, 1851, 2173
SseBI	AGGCCT	2 cut(s)	432, 992
SspI	AATATT	1 cut(s)	2254
SspMI	CTAG	5 cut(s)	612, 1034, 1200, 1388, 1445
StuI	AGGCCT	2 cut(s)	432, 992
StyI	CCWWGG	5 cut(s)	42, 440, 1188, 1302, 1866
TaaI	ACNGT	2 cut(s)	596, 1105
TaqII	GACCGA	2 cut(s)	650, 788
TasI	AATT	8 cut(s)	251, 425, 919, 1154, 1232, 1580, 1851, 2173
TatI	WGTACW	4 cut(s)	930, 1150, 1209, 2240
TauI	GCSGC	4 cut(s)	110, 113, 973, 1100
TfiI	GAWTC	8 cut(s)	380, 466, 654, 792, 832, 1057, 1535, 2065
Tru1I	TTAA	4 cut(s)	918, 1116, 1790, 2256
Tru9I	TTAA	4 cut(s)	918, 1116, 1790, 2256
TscAI	CASTG	7 cut(s)	607, 793, 1367, 1482, 1992, 2134, 2276
TseI	GCWGC	9 cut(s)	144, 164, 210, 409, 585, 698, 1171, 1756, 2153
TspDTI	ATGAA	6 cut(s)	264, 561, 1036, 1498, 1544, 1922
TspGWI	ACGGA	3 cut(s)	215, 273, 1848
TspMI	CCCGGG	1 cut(s)	719
TspRI	CASTG	7 cut(s)	607, 793, 1367, 1482, 1992, 2134, 2276
Tth111I	GACNNNGTC	1 cut(s)	1277
Vha464I	CTTAAG	1 cut(s)	1789
VpaK11BI	GGWCC	4 cut(s)	39, 1644, 1838, 2098
XagI	CCTNNNNNAGG	1 cut(s)	1865
XapI	RAATTY	2 cut(s)	251, 2173
XceI	RCATGY	3 cut(s)	16, 585, 1930
XmaI	CCCGGG	1 cut(s)	719
XmiI	GTMKAC	1 cut(s)	9
XmnI	GAANNNNTTC	1 cut(s)	1074
XspI	CTAG	5 cut(s)	612, 1034, 1200, 1388, 1445
Zsp2I	ATGCAT	3 cut(s)	1085, 1300, 1337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.