Rorug02G0353600

Homeobox-leucine zipper protein GLABRA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005711
Physical Location & Seq
Reverse (-)
44442515 .. 44442823
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0353600.1

Sequence Viewer

Length: 309 bp
ATGAAAATCGGCGCGGCCACCGTCCTCGACGGCGTCCACCTCGAAGACAGCATCGCCGTCAATGGCACCTGCCTCACCGTCACGAAATTCGACGATTCTCATTTCACCGTCGGTCTGGTGCCGGAGACGTTGCGGAAAGACCTCGCTGGTGGAGCTCGAGCCGGGTTCGCTGGTCAATCTGGAGCGGGTGGTGCTGCCGACGAGCCGGATTCGCTGTGGATCAAGGTGAAGACAACGAAGGAAATACAGTCAAATACTCAAGTATGTGGTGCCGTAAGGGTGTACGTATATAGCTGTGGATGGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox START

Protein Analysis

102

Amino Acids

10.65

Weight (kDa)

5.2

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lum_binding PF00677 12 - 52 1.3e-10 Lumazine binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 77
Acc36I ACCTGC 1 cut(s) 77
AccB1I GGYRCC 3 cut(s) 65, 118, 269
AccBSI CCGCTC 1 cut(s) 185
AccII CGCG 1 cut(s) 14
AciI CCGC 3 cut(s) 14, 133, 185
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 284
AluBI AGCT 2 cut(s) 155, 294
AluI AGCT 2 cut(s) 155, 294
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 3 cut(s) 67, 97, 238
AvaI CYCGRG 1 cut(s) 156
BanI GGYRCC 3 cut(s) 65, 118, 269
BanII GRGCYC 1 cut(s) 157
BbsI GAAGAC 2 cut(s) 51, 236
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 294
BceAI ACGGC 3 cut(s) 41, 46, 257
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 307
BfuAI ACCTGC 1 cut(s) 77
BisI GCNGC 2 cut(s) 15, 195
BlsI GCNGC 2 cut(s) 16, 196
Bme1390I CCNGG 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 156
BmiI GGNNCC 3 cut(s) 67, 120, 271
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 60
BpiI GAAGAC 2 cut(s) 51, 236
BpmI CTGGAG 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 243
BpuMI CCSGG 1 cut(s) 163
BsaAI YACGTR 1 cut(s) 286
BsaHI GRCGYC 1 cut(s) 33
BseGI GGATG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 1 cut(s) 17
BshNI GGYRCC 3 cut(s) 65, 118, 269
BsiHKAI GWGCWC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 3 cut(s) 122, 162, 206
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
BsnI GGCC 1 cut(s) 17
BsoBI CYCGRG 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 3 cut(s) 14, 133, 185
BspANI GGCC 1 cut(s) 17
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 3 cut(s) 67, 120, 271
BspMI ACCTGC 1 cut(s) 77
BspPI GGATC 1 cut(s) 227
BspT107I GGYRCC 3 cut(s) 65, 118, 269
BsrBI CCGCTC 1 cut(s) 185
BssMI GATC 1 cut(s) 219
BssNI GRCGYC 1 cut(s) 33
Bst4CI ACNGT 4 cut(s) 22, 79, 109, 249
BstACI GRCGYC 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 286
BstF5I GGATG 1 cut(s) 305
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 4 cut(s) 152, 167, 191, 211
BstSCI CCNGG 1 cut(s) 161
BstSNI TACGTA 1 cut(s) 286
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 2 cut(s) 51, 236
BsuRI GGCC 1 cut(s) 17
BtgZI GCGATG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 305
BveI ACCTGC 1 cut(s) 77
CfoI GCGC 1 cut(s) 14
CseI GACGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 283
CviJI RGCY 5 cut(s) 17, 155, 161, 205, 294
CviKI_1 RGCY 5 cut(s) 17, 155, 161, 205, 294
CviQI GTAC 1 cut(s) 283
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
EaeI YGGCCR 1 cut(s) 15
Ecl136II GAGCTC 1 cut(s) 155
Eco105I TACGTA 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 119
FaiI YATR 3 cut(s) 265, 289, 291
FauI CCCGC 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 15, 195
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 2 cut(s) 15, 195
FspBI CTAG 1 cut(s) 307
GlaI GCGC 1 cut(s) 13
GluI GCNGC 2 cut(s) 15, 195
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 17
HapII CCGG 3 cut(s) 122, 162, 206
HgaI GACGC 1 cut(s) 22
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 33
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 2 cut(s) 95, 209
HpaII CCGG 3 cut(s) 122, 162, 206
HphI GGTGA 3 cut(s) 67, 97, 238
Hpy166II GTNNAC 2 cut(s) 37, 283
Hpy188III TCNNGA 2 cut(s) 82, 180
Hpy8I GTNNAC 2 cut(s) 37, 283
Hpy99I CGWCG 4 cut(s) 32, 95, 113, 203
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 4 cut(s) 22, 79, 109, 249
HpyCH4IV ACGT 2 cut(s) 128, 285
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 167, 191, 211
HpySE526I ACGT 2 cut(s) 128, 285
Hsp92I GRCGYC 1 cut(s) 33
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 1 cut(s) 219
LmnI GCTCC 2 cut(s) 152, 182
LpnPI CCDG 8 cut(s) 82, 101, 132, 135, 156, 165, 175, 219
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 307
MaeII ACGT 2 cut(s) 128, 285
MaeIII GTNAC 1 cut(s) 79
MalI GATC 1 cut(s) 221
MbiI CCGCTC 1 cut(s) 185
MboI GATC 1 cut(s) 219
MboII GAAGA 2 cut(s) 56, 241
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 1 cut(s) 86
MnlI CCTC 4 cut(s) 35, 50, 83, 152
MspI CCGG 3 cut(s) 122, 162, 206
MspR9I CCNGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 4 cut(s) 152, 167, 191, 211
NciI CCSGG 1 cut(s) 163
NdeII GATC 1 cut(s) 219
NlaIV GGNNCC 3 cut(s) 67, 120, 271
NmuCI GTSAC 1 cut(s) 79
PaeR7I CTCGAG 1 cut(s) 156
PaqCI CACCTGC 1 cut(s) 77
PfeI GAWTC 2 cut(s) 95, 209
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 2 cut(s) 16, 196
Ppu21I YACGTR 1 cut(s) 286
Psp124BI GAGCTC 1 cut(s) 157
PspN4I GGNNCC 3 cut(s) 67, 120, 271
PspXI VCTCGAGB 1 cut(s) 156
PsyI GACNNNGTC 1 cut(s) 32
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SacI GAGCTC 1 cut(s) 157
SatI GCNGC 2 cut(s) 15, 195
Sau3AI GATC 1 cut(s) 219
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 157
SetI ASST 8 cut(s) 42, 71, 131, 144, 157, 228, 288, 296
SfaNI GCATC 1 cut(s) 60
Sfr274I CTCGAG 1 cut(s) 156
SlaI CTCGAG 1 cut(s) 156
SmlI CTYRAG 2 cut(s) 156, 258
SmoI CTYRAG 2 cut(s) 156, 258
SnaBI TACGTA 1 cut(s) 286
Sse9I AATT 1 cut(s) 86
SsiI CCGC 3 cut(s) 14, 133, 185
SspMI CTAG 1 cut(s) 307
SstI GAGCTC 1 cut(s) 157
StyD4I CCNGG 1 cut(s) 161
TaaI ACNGT 4 cut(s) 22, 79, 109, 249
TaiI ACGT 2 cut(s) 131, 288
TaqI TCGA 4 cut(s) 27, 42, 90, 157
TaqII GACCGA 1 cut(s) 101
TasI AATT 1 cut(s) 86
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 2 cut(s) 95, 209
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 32
XapI RAATTY 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 156
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.