Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005711

Physical Location & Seq

Genomic Coordinates Reverse (-)

61327524 .. 61334753

Gene Structure 7230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG423700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1929 bp

ATGGAAGCGCTGTTCAAGGAGTCACCCCATCCAGATGAGAAGCAAAGACAGCAGCTGAGCAAGCAGTTAGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGCCGTACCCAAATCAAGGCTATACAAGAGCGCCATGAAAACTCGTTGTTGAAAGGAGAAATGGAGAAACTCCGAGACGAGAATAAGGCGATGAGGGAGCAAATAAACAAAGCTTGTTGCCCCAACTGTGGCAGTGCCACGACTAGCAGAGATGCCACCTTGACAACCGAGGAGCAACAACTCCGAATCGAAAATGCGAGACTCAAATCCGAGGTTGAAAAACTCCGAGCAGCTCTAGTAAAATACCCTATTGGGACATCCTCTCCTTCCAGCTCTACTGGCCAGGACCAGGAGAGCAGAAGTTCTTTGGACTTTTACACAGGAATTTTCGGTCTTGAGAAGTCGAGGATTATGGAGATAGTTAACCAAGCAATGGAGGAGCTTCAAAAGATGGCCACAGCTGGAGAACCACTCTGGGTTCGAAGTGTTGAGACTGGCCGTGAAATACTTAATTATGATGAGTACATCAAAGAGTTCAACATTGAAATTCCAGCCAGTGGGCGGCCAAAGAGATCCATTGAGGCCTCAAGGGACACGGGTGTGGTTTTTGTGGATCTCCCAAGACTAGTTCAGAGCTTCATGGATGTGAATCAATGGAAGGAAATGTTTCCATCTATGATCTCAAAGGCTGCCACTGTTGATGTTATTAGCAATGGCGAAGGAGACAATAGAAATGGTGCTGTACAATTGATGTTTGCAGAGCTGCAAATGCTTACACCTTTGGTGCCCACCAGAGAAGTTTACTTCGTTAGATGTAGCAAGCAACTGAGTCCTGAACAGTGGGCTGTTGTTGATGTTTCAATTGACAAAGTTGAAGATAACATTGATGCGTCCTTGGTGAAATGCAGAAAACGTCCCTCTGGTTGCATCATCGAAGACAAATCAAACGGCCATTGCAAGGTAATCTGGGTGGAGCACTTAGAGTGCCAGAAAAGCACAGTTCAGACCATGTACCGGAGTATAGTCAACAGTGGTCTGGCATTTGGTGCAAGACATTGGGTAGCGACGCTGCAACTCCAATGCGAAAGGCTTGTTTTCTTCATGGCAACCAATGTTCCGATGAAGGATTCAACTGGAGTAGCCACATTGGCTGGGAGAAAAAGCATTTTGAAAATGGCACAAAGAATGACATCAAGTTTTTGTCGCGCGATTGGAGCATCAAGCTACCATACCTGGACCAAGATCTCAAGCAAAACAGGTGATGACATTAGGATTTCCTCCAGGAAGAACTTGAACGATCCGGGAGAGCCTCTTGGTGTGATCTTGTGTGCAGTTTCTTCAGTATGGTTGCCTGTCTCTCCTTATGCCCTCTTCGATTTTTTGAGAGATGAGAATCGCAGGAACGAGTGGGACATTATGTTAAATGGGGGTCCGGCGCAAACAATTGCAAACCTATCCAAAGGACAAGATCGTGGCAATGCTGTTACTATTCAAACAATGAAATCAAAAGAGAACAGCATGTGGATTCTACAAGATAGCTGCATAAATGCTTACGAGTCCATGGTGGTTTATGCTCCGGTGGATATCACTGGCATGCAGTCTGTGATGACAGGATGCGACTCGAGCAACATGGCCGTATTGTCTTCAGGGTTCTCAATTCTTCCAGATGGGTTGGAGTCGAGGCCTATGGTCATCACTTCCAGGCAAGAAGATCGAGGCAGTGACAGTGAAGGAGGAACTTTGTTAACCGTAGCATTTCAAGTCTTGACTAATACCTCTCCTACTGCCAAACTAACTGTGGAGTCTGTAGAGTCTGCCAACACTCTTATATCATGTACTTTGAGAAATATTAAGACGAGCTTGCAGTGTGAGGATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

642

Amino Acids

71.62

Weight (kDa)

6.41

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	1 - 42	7.7e-15	Homeodomain
START	PF01852	156 - 379	2.1e-53	START domain
PDF2_C	PF25797	398 - 639	2.9e-106	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79840 AT1G79840 AT1G79840 AT1G79840 AT1G79840 AT1G79840
fragaria_vesca	FvH4_6g31780 FvH4_6g31780 FvH4_6g31780 FvH4_6g31780 FvH4_6g31780 FvH4_6g31780
malus_domestica	MD09G1209300.v1.1 MD17G1191000.v1.1
prunus_persica	Prupe.3G067200_v2.0.a1
pyrus_communis	pycom09g12540 pycom17g19810
rosa_chinensis	RchiOBHm_Chr2g0138951
rosa_laevigata	RLG00000019771
rosa_multiflora	Rmu_sc0001376.1_g000004
rosa_roxburghii	Rroxscaffold_2G00105840
rosa_rugosa	Rorug02G0353500 Rorug02G0353600
rosa_samantha	Rh2AG403500 Rh2BG413900 Rh2CG389600 Rh2DG423700
rosa_wichuraiana	Rw2G032830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	832
AccB7I	CCANNNNNTGG	2 cut(s)	481, 605
AccII	CGCG	2 cut(s)	1254, 1256
AciI	CCGC	1 cut(s)	610
AclWI	GGATC	3 cut(s)	615, 669, 1340
AcoI	YGGCCR	6 cut(s)	388, 501, 544, 611, 997, 1680
AcsI	RAATTY	2 cut(s)	432, 594
AcuI	CTGAAG	2 cut(s)	1371, 1677
AfaI	GTAC	5 cut(s)	115, 572, 792, 1061, 1885
AfeI	AGCGCT	1 cut(s)	9
AfiI	CCNNNNNNNGG	8 cut(s)	124, 236, 397, 481, 605, 609, 1006, 1062
AhlI	ACTAGT	1 cut(s)	673
AjnI	CCWGG	5 cut(s)	390, 396, 1280, 1328, 1748
AleI	CACNNNNGTG	1 cut(s)	647
AloI	GAACNNNNNNTCC	1 cut(s)	28
Alw21I	GWGCWC	1 cut(s)	1026
Alw26I	GTCTC	5 cut(s)	177, 301, 533, 765, 1408
AlwI	GGATC	3 cut(s)	615, 669, 1340
AlwNI	CAGNNNCTG	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	1669
Aor51HI	AGCGCT	1 cut(s)	9
AoxI	GGCC	9 cut(s)	70, 388, 501, 544, 611, 630, 997, 1680, 1730
ApeKI	GCWGC	6 cut(s)	52, 338, 737, 811, 1117, 1587
ApoI	RAATTY	2 cut(s)	432, 594
Asp700I	GAANNNNTTC	1 cut(s)	714
AspLEI	GCGC	4 cut(s)	10, 141, 1256, 1486
AspS9I	GGNCC	3 cut(s)	394, 1284, 1478
AsuC2I	CCSGG	1 cut(s)	1350
AsuHPI	GGTGA	3 cut(s)	15, 958, 1319
AsuII	TTCGAA	1 cut(s)	529
AvaI	CYCGRG	1 cut(s)	1669
AvaII	GGWCC	3 cut(s)	394, 1284, 1478
BaeGI	GKGCMC	1 cut(s)	837
BalI	TGGCCA	2 cut(s)	390, 503
BanI	GGYRCC	1 cut(s)	832
BbsI	GAAGAC	2 cut(s)	990, 1683
Bbv12I	GWGCWC	1 cut(s)	1026
BbvI	GCAGC	6 cut(s)	64, 350, 724, 798, 1104, 1574
BccI	CCATC	5 cut(s)	36, 493, 727, 1709, 1916
BceAI	ACGGC	4 cut(s)	96, 531, 1012, 1667
BcgI	CGANNNNNNTGC	2 cut(s)	1742, 1776
BciT130I	CCWGG	5 cut(s)	392, 398, 1282, 1330, 1750
BcnI	CCSGG	1 cut(s)	1350
BcoDI	GTCTC	5 cut(s)	177, 301, 533, 765, 1408
BcuI	ACTAGT	1 cut(s)	673
BfaI	CTAG	3 cut(s)	252, 344, 674
BfmI	CTRYAG	1 cut(s)	1854
BfoI	RGCGCY	2 cut(s)	11, 142
BglI	GCCNNNNNGGC	1 cut(s)	1196
BglII	AGATCT	1 cut(s)	1290
BisI	GCNGC	7 cut(s)	53, 339, 611, 738, 812, 1118, 1588
BlpI	GCTNAGC	1 cut(s)	56
BlsI	GCNGC	7 cut(s)	54, 340, 612, 739, 813, 1119, 1589
Bme1390I	CCNGG	6 cut(s)	392, 398, 1282, 1330, 1350, 1750
Bme18I	GGWCC	3 cut(s)	394, 1284, 1478
BmeT110I	CYCGRG	1 cut(s)	1669
BmgT120I	GGNCC	3 cut(s)	394, 1284, 1478
BmiI	GGNNCC	3 cut(s)	101, 834, 1479
BmrFI	CCNGG	6 cut(s)	392, 398, 1282, 1330, 1350, 1750
BmsI	GCATC	5 cut(s)	250, 925, 984, 1274, 1652
BpiI	GAAGAC	2 cut(s)	990, 1683
BplI	GAGNNNNNCTC	2 cut(s)	504, 536
BpmI	CTGGAG	3 cut(s)	531, 1203, 1312
Bpu1102I	GCTNAGC	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	529
BpuEI	CTTGAG	3 cut(s)	464, 619, 1279
BpuMI	CCSGG	1 cut(s)	1350
BsaBI	GATNNNNATC	2 cut(s)	696, 1440
BsaJI	CCNNGG	5 cut(s)	80, 276, 318, 942, 1608
BsaWI	WCCGGW	2 cut(s)	1062, 1624
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	8 cut(s)	124, 236, 397, 481, 605, 609, 1006, 1062
Bse1I	ACTGG	5 cut(s)	391, 547, 603, 1186, 1642
Bse3DI	GCAATG	4 cut(s)	486, 766, 1000, 1531
Bse8I	GATNNNNATC	2 cut(s)	696, 1440
BseBI	CCWGG	5 cut(s)	392, 398, 1282, 1330, 1750
BseDI	CCNNGG	5 cut(s)	80, 276, 318, 942, 1608
BseGI	GGATG	5 cut(s)	28, 365, 697, 1667, 1927
BseJI	GATNNNNATC	2 cut(s)	696, 1440
BseLI	CCNNNNNNNGG	8 cut(s)	124, 236, 397, 481, 605, 609, 1006, 1062
BseMI	GCAATG	4 cut(s)	486, 766, 1000, 1531
BseMII	CTCAG	2 cut(s)	47, 866
BseNI	ACTGG	5 cut(s)	391, 547, 603, 1186, 1642
BseRI	GAGGAG	2 cut(s)	293, 500
BseSI	GKGCMC	1 cut(s)	837
BseXI	GCAGC	6 cut(s)	64, 350, 724, 798, 1104, 1574
BseYI	CCCAGC	1 cut(s)	1199
BsgI	GTGCAG	1 cut(s)	1398
Bsh1236I	CGCG	2 cut(s)	1254, 1256
BshFI	GGCC	9 cut(s)	72, 390, 503, 546, 613, 632, 999, 1682, 1732
BshNI	GGYRCC	1 cut(s)	832
BsiHKAI	GWGCWC	1 cut(s)	1026
BsiHKCI	CYCGRG	1 cut(s)	1669
BsiSI	CCGG	4 cut(s)	1063, 1349, 1481, 1625
BslFI	GGGAC	4 cut(s)	376, 653, 948, 1472
BslI	CCNNNNNNNGG	8 cut(s)	124, 236, 397, 481, 605, 609, 1006, 1062
BsmAI	GTCTC	5 cut(s)	177, 301, 533, 765, 1408
BsmBI	CGTCTC	1 cut(s)	177
BsmFI	GGGAC	4 cut(s)	376, 653, 948, 1472
BsnI	GGCC	9 cut(s)	72, 390, 503, 546, 613, 632, 999, 1682, 1732
BsoBI	CYCGRG	1 cut(s)	1669
Bsp119I	TTCGAA	1 cut(s)	529
Bsp1286I	GDGCHC	2 cut(s)	837, 1026
Bsp1407I	TGTACA	1 cut(s)	790
Bsp143I	GATC	8 cut(s)	620, 661, 726, 1290, 1345, 1368, 1516, 1759
Bsp1720I	GCTNAGC	1 cut(s)	56
Bsp19I	CCATGG	1 cut(s)	1608
BspACI	CCGC	1 cut(s)	610
BspANI	GGCC	9 cut(s)	72, 390, 503, 546, 613, 632, 999, 1682, 1732
BspCNI	CTCAG	2 cut(s)	48, 867
BspFNI	CGCG	2 cut(s)	1254, 1256
BspLI	GGNNCC	3 cut(s)	101, 834, 1479
BspPI	GGATC	3 cut(s)	615, 669, 1340
BspT104I	TTCGAA	1 cut(s)	529
BspT107I	GGYRCC	1 cut(s)	832
BsrDI	GCAATG	4 cut(s)	486, 766, 1000, 1531
BsrGI	TGTACA	1 cut(s)	790
BsrI	ACTGG	5 cut(s)	391, 547, 603, 1186, 1642
BssECI	CCNNGG	5 cut(s)	80, 276, 318, 942, 1608
BssMI	GATC	8 cut(s)	620, 661, 726, 1290, 1345, 1368, 1516, 1759
BssT1I	CCWWGG	3 cut(s)	80, 942, 1608
Bst2UI	CCWGG	5 cut(s)	392, 398, 1282, 1330, 1750
Bst4CI	ACNGT	8 cut(s)	236, 745, 888, 1048, 1079, 1775, 1798, 1846
Bst6I	CTCTTC	1 cut(s)	1424
BstAPI	GCANNNNNTGC	1 cut(s)	1094
BstAUI	TGTACA	1 cut(s)	790
BstBI	TTCGAA	1 cut(s)	529
BstC8I	GCNNGC	4 cut(s)	62, 869, 1643, 1910
BstDEI	CTNAG	3 cut(s)	56, 875, 1027
BstDSI	CCRYGG	1 cut(s)	1608
BstF5I	GGATG	5 cut(s)	28, 365, 697, 1667, 1927
BstFNI	CGCG	2 cut(s)	1254, 1256
BstH2I	RGCGCY	2 cut(s)	11, 142
BstHHI	GCGC	4 cut(s)	10, 141, 1256, 1486
BstKTI	GATC	8 cut(s)	623, 664, 729, 1293, 1348, 1371, 1519, 1762
BstMAI	GTCTC	5 cut(s)	177, 301, 533, 765, 1408
BstMBI	GATC	8 cut(s)	620, 661, 726, 1290, 1345, 1368, 1516, 1759
BstMWI	GCNNNNNNNGC	9 cut(s)	49, 61, 387, 817, 1041, 1094, 1196, 1262, 1671
BstNI	CCWGG	5 cut(s)	392, 398, 1282, 1330, 1750
BstNSI	RCATGY	2 cut(s)	1570, 1645
BstSCI	CCNGG	6 cut(s)	390, 396, 1280, 1328, 1348, 1748
BstSFI	CTRYAG	1 cut(s)	1854
BstSLI	GKGCMC	1 cut(s)	837
BstUI	CGCG	2 cut(s)	1254, 1256
BstV1I	GCAGC	6 cut(s)	64, 350, 724, 798, 1104, 1574
BstV2I	GAAGAC	2 cut(s)	990, 1683
BstX2I	RGATCY	3 cut(s)	620, 661, 1290
BstYI	RGATCY	3 cut(s)	620, 661, 1290
BsuRI	GGCC	9 cut(s)	72, 390, 503, 546, 613, 632, 999, 1682, 1732
BtgI	CCRYGG	1 cut(s)	1608
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	5 cut(s)	28, 365, 697, 1667, 1927
BtsI	GCAGTG	3 cut(s)	247, 1774, 1919
BtsIMutI	CAGTG	9 cut(s)	247, 610, 741, 893, 1084, 1635, 1774, 1780, 1919
Cac8I	GCNNGC	4 cut(s)	62, 869, 1643, 1910
CaiI	CAGNNNCTG	1 cut(s)	55
CfoI	GCGC	4 cut(s)	10, 141, 1256, 1486
Cfr13I	GGNCC	3 cut(s)	394, 1284, 1478
CseI	GACGC	2 cut(s)	927, 1123
Csp6I	GTAC	5 cut(s)	114, 571, 791, 1060, 1884
CviAII	CATG	9 cut(s)	143, 688, 1057, 1150, 1567, 1609, 1642, 1678, 1881
CviQI	GTAC	5 cut(s)	114, 571, 791, 1060, 1884
DdeI	CTNAG	3 cut(s)	56, 875, 1027
DpnI	GATC	8 cut(s)	622, 663, 728, 1292, 1347, 1370, 1518, 1761
DpnII	GATC	8 cut(s)	620, 661, 726, 1290, 1345, 1368, 1516, 1759
EaeI	YGGCCR	6 cut(s)	388, 501, 544, 611, 997, 1680
Eam1104I	CTCTTC	1 cut(s)	1424
EarI	CTCTTC	1 cut(s)	1424
Eco130I	CCWWGG	3 cut(s)	80, 942, 1608
Eco147I	AGGCCT	3 cut(s)	72, 632, 1732
Eco32I	GATATC	1 cut(s)	1633
Eco47I	GGWCC	3 cut(s)	394, 1284, 1478
Eco47III	AGCGCT	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	1371, 1677
Eco88I	CYCGRG	1 cut(s)	1669
EcoRII	CCWGG	5 cut(s)	390, 396, 1280, 1328, 1748
EcoRV	GATATC	1 cut(s)	1633
EcoT14I	CCWWGG	3 cut(s)	80, 942, 1608
ErhI	CCWWGG	3 cut(s)	80, 942, 1608
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	9 cut(s)	146, 691, 1060, 1153, 1570, 1612, 1645, 1681, 1884
FalI	AAGNNNNNCTT	2 cut(s)	1892, 1924
FaqI	GGGAC	4 cut(s)	376, 653, 948, 1472
FatI	CATG	9 cut(s)	142, 687, 1056, 1149, 1566, 1608, 1641, 1677, 1880
Fnu4HI	GCNGC	7 cut(s)	53, 339, 611, 738, 812, 1118, 1588
FokI	GGATG	4 cut(s)	15, 352, 704, 1674
Fsp4HI	GCNGC	7 cut(s)	53, 339, 611, 738, 812, 1118, 1588
FspBI	CTAG	3 cut(s)	252, 344, 674
GlaI	GCGC	4 cut(s)	9, 140, 1255, 1485
GluI	GCNGC	7 cut(s)	53, 339, 611, 738, 812, 1118, 1588
GsaI	CCCAGC	1 cut(s)	1203
GsuI	CTGGAG	3 cut(s)	531, 1203, 1312
HaeII	RGCGCY	2 cut(s)	11, 142
HaeIII	GGCC	9 cut(s)	72, 390, 503, 546, 613, 632, 999, 1682, 1732
HapII	CCGG	4 cut(s)	1063, 1349, 1481, 1625
HgaI	GACGC	2 cut(s)	927, 1123
HhaI	GCGC	4 cut(s)	10, 141, 1256, 1486
Hin1II	CATG	9 cut(s)	146, 691, 1060, 1153, 1570, 1612, 1645, 1681, 1884
Hin6I	GCGC	4 cut(s)	8, 139, 1254, 1484
HinP1I	GCGC	4 cut(s)	8, 139, 1254, 1484
HincII	GTYRAC	3 cut(s)	472, 1075, 1794
HindII	GTYRAC	3 cut(s)	472, 1075, 1794
HindIII	AAGCTT	1 cut(s)	219
HpaI	GTTAAC	2 cut(s)	472, 1794
HpaII	CCGG	4 cut(s)	1063, 1349, 1481, 1625
HphI	GGTGA	3 cut(s)	15, 958, 1319
Hpy166II	GTNNAC	4 cut(s)	472, 850, 1075, 1794
Hpy188I	TCNGA	7 cut(s)	182, 293, 319, 335, 681, 1053, 1167
Hpy188III	TCNNGA	5 cut(s)	32, 443, 881, 1712, 1813
Hpy8I	GTNNAC	4 cut(s)	472, 850, 1075, 1794
Hpy99I	CGWCG	1 cut(s)	1117
HpyAV	CCTTC	5 cut(s)	384, 700, 761, 1165, 1772
HpyCH4III	ACNGT	8 cut(s)	236, 745, 888, 1048, 1079, 1775, 1798, 1846
HpyCH4IV	ACGT	1 cut(s)	961
HpyF10VI	GCNNNNNNNGC	9 cut(s)	49, 61, 387, 817, 1041, 1094, 1196, 1262, 1671
HpyF3I	CTNAG	3 cut(s)	56, 875, 1027
HpySE526I	ACGT	1 cut(s)	961
Hsp92II	CATG	9 cut(s)	146, 691, 1060, 1153, 1570, 1612, 1645, 1681, 1884
HspAI	GCGC	4 cut(s)	8, 139, 1254, 1484
KspAI	GTTAAC	2 cut(s)	472, 1794
Kzo9I	GATC	8 cut(s)	620, 661, 726, 1290, 1345, 1368, 1516, 1759
LmnI	GCTCC	7 cut(s)	82, 205, 280, 487, 1021, 1262, 1627
Lsp1109I	GCAGC	6 cut(s)	64, 350, 724, 798, 1104, 1574
LweI	GCATC	5 cut(s)	250, 925, 984, 1274, 1652
MaeI	CTAG	3 cut(s)	252, 344, 674
MaeII	ACGT	1 cut(s)	961
MaeIII	GTNAC	3 cut(s)	21, 1531, 1769
MalI	GATC	8 cut(s)	622, 663, 728, 1292, 1347, 1370, 1518, 1761
MboI	GATC	8 cut(s)	620, 661, 726, 1290, 1345, 1368, 1516, 1759
MboII	GAAGA	9 cut(s)	935, 995, 1138, 1345, 1377, 1411, 1683, 1700, 1769
MfeI	CAATTG	3 cut(s)	794, 909, 1491
MflI	RGATCY	3 cut(s)	620, 661, 1290
MhlI	GDGCHC	2 cut(s)	837, 1026
MlsI	TGGCCA	2 cut(s)	390, 503
MluCI	AATT	7 cut(s)	432, 559, 594, 794, 909, 1491, 1704
MluNI	TGGCCA	2 cut(s)	390, 503
MlyI	GAGTC	8 cut(s)	29, 303, 886, 1613, 1661, 1733, 1859, 1868
MmeI	TCCRAC	1 cut(s)	1701
Mox20I	TGGCCA	2 cut(s)	390, 503
MroXI	GAANNNNTTC	1 cut(s)	714
MscI	TGGCCA	2 cut(s)	390, 503
MseI	TTAA	5 cut(s)	471, 558, 1469, 1793, 1899
MslI	CAYNNNNRTG	4 cut(s)	33, 647, 692, 1640
Msp20I	TGGCCA	2 cut(s)	390, 503
MspA1I	CMGCKG	2 cut(s)	55, 509
MspI	CCGG	4 cut(s)	1063, 1349, 1481, 1625
MspR9I	CCNGG	6 cut(s)	392, 398, 1282, 1330, 1350, 1750
MunI	CAATTG	3 cut(s)	794, 909, 1491
MvaI	CCWGG	5 cut(s)	392, 398, 1282, 1330, 1750
MvnI	CGCG	2 cut(s)	1254, 1256
MwoI	GCNNNNNNNGC	9 cut(s)	49, 61, 387, 817, 1041, 1094, 1196, 1262, 1671
NciI	CCSGG	1 cut(s)	1350
NcoI	CCATGG	1 cut(s)	1608
NdeII	GATC	8 cut(s)	620, 661, 726, 1290, 1345, 1368, 1516, 1759
NlaIII	CATG	9 cut(s)	146, 691, 1060, 1153, 1570, 1612, 1645, 1681, 1884
NlaIV	GGNNCC	3 cut(s)	101, 834, 1479
NmuCI	GTSAC	2 cut(s)	21, 1769
NspI	RCATGY	2 cut(s)	1570, 1645
NspV	TTCGAA	1 cut(s)	529
OliI	CACNNNNGTG	1 cut(s)	647
PaeI	GCATGC	1 cut(s)	1645
PaeR7I	CTCGAG	1 cut(s)	1669
PceI	AGGCCT	3 cut(s)	72, 632, 1732
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	5 cut(s)	294, 697, 1175, 1441, 1573
PflMI	CCANNNNNTGG	2 cut(s)	481, 605
PfoI	TCCNGGA	2 cut(s)	1328, 1348
PkrI	GCNGC	7 cut(s)	54, 340, 612, 739, 813, 1119, 1589
PleI	GAGTC	8 cut(s)	28, 303, 885, 1612, 1661, 1732, 1858, 1867
PpsI	GAGTC	8 cut(s)	28, 303, 885, 1612, 1661, 1732, 1858, 1867
Psp6I	CCWGG	5 cut(s)	390, 396, 1280, 1328, 1748
PspFI	CCCAGC	1 cut(s)	1199
PspGI	CCWGG	5 cut(s)	390, 396, 1280, 1328, 1748
PspN4I	GGNNCC	3 cut(s)	101, 834, 1479
PspPI	GGNCC	3 cut(s)	394, 1284, 1478
PspXI	VCTCGAGB	1 cut(s)	1669
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	3 cut(s)	620, 661, 1290
PvuII	CAGCTG	2 cut(s)	55, 509
RsaI	GTAC	5 cut(s)	115, 572, 792, 1061, 1885
RsaNI	GTAC	5 cut(s)	114, 571, 791, 1060, 1884
RseI	CAYNNNNRTG	4 cut(s)	33, 647, 692, 1640
SaqAI	TTAA	5 cut(s)	471, 558, 1469, 1793, 1899
SatI	GCNGC	7 cut(s)	53, 339, 611, 738, 812, 1118, 1588
Sau3AI	GATC	8 cut(s)	620, 661, 726, 1290, 1345, 1368, 1516, 1759
Sau96I	GGNCC	3 cut(s)	394, 1284, 1478
SchI	GAGTC	8 cut(s)	29, 303, 886, 1613, 1661, 1733, 1859, 1868
ScrFI	CCNGG	6 cut(s)	392, 398, 1282, 1330, 1350, 1750
SduI	GDGCHC	2 cut(s)	837, 1026
SfaNI	GCATC	5 cut(s)	250, 925, 984, 1274, 1652
SfcI	CTRYAG	1 cut(s)	1854
Sfr274I	CTCGAG	1 cut(s)	1669
SfuI	TTCGAA	1 cut(s)	529
SinI	GGWCC	3 cut(s)	394, 1284, 1478
SlaI	CTCGAG	1 cut(s)	1669
SmiMI	CAYNNNNRTG	4 cut(s)	33, 647, 692, 1640
SmlI	CTYRAG	4 cut(s)	443, 634, 1294, 1669
SmoI	CTYRAG	4 cut(s)	443, 634, 1294, 1669
SpeI	ACTAGT	1 cut(s)	673
SphI	GCATGC	1 cut(s)	1645
Sse9I	AATT	7 cut(s)	432, 559, 594, 794, 909, 1491, 1704
SseBI	AGGCCT	3 cut(s)	72, 632, 1732
SsiI	CCGC	1 cut(s)	610
SspI	AATATT	1 cut(s)	1897
SspMI	CTAG	3 cut(s)	252, 344, 674
StuI	AGGCCT	3 cut(s)	72, 632, 1732
StyD4I	CCNGG	6 cut(s)	390, 396, 1280, 1328, 1348, 1748
StyI	CCWWGG	3 cut(s)	80, 942, 1608
TaaI	ACNGT	8 cut(s)	236, 745, 888, 1048, 1079, 1775, 1798, 1846
TaiI	ACGT	1 cut(s)	964
TaqI	TCGA	8 cut(s)	297, 452, 529, 981, 1422, 1670, 1727, 1762
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	7 cut(s)	432, 559, 594, 794, 909, 1491, 1704
TatI	WGTACW	3 cut(s)	570, 790, 1883
TauI	GCSGC	1 cut(s)	613
TfiI	GAWTC	5 cut(s)	294, 697, 1175, 1441, 1573
Tru1I	TTAA	5 cut(s)	471, 558, 1469, 1793, 1899
Tru9I	TTAA	5 cut(s)	471, 558, 1469, 1793, 1899
TscAI	CASTG	9 cut(s)	247, 610, 748, 893, 1084, 1642, 1774, 1780, 1919
TseFI	GTSAC	2 cut(s)	21, 1769
TseI	GCWGC	6 cut(s)	52, 338, 737, 811, 1117, 1587
Tsp45I	GTSAC	2 cut(s)	21, 1769
TspDTI	ATGAA	5 cut(s)	159, 676, 1138, 1184, 1562
TspRI	CASTG	9 cut(s)	247, 610, 748, 893, 1084, 1642, 1774, 1780, 1919
Van91I	CCANNNNNTGG	2 cut(s)	481, 605
VpaK11BI	GGWCC	3 cut(s)	394, 1284, 1478
XapI	RAATTY	2 cut(s)	432, 594
XceI	RCATGY	2 cut(s)	1570, 1645
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1843
XhoI	CTCGAG	1 cut(s)	1669
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	3 cut(s)	252, 344, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.