Rroxscaffold_2G00105840

Homeobox-leucine zipper protein GLABRA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005711
Physical Location & Seq
Forward (+)
29335124 .. 29339432
4309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105840.1

Sequence Viewer

Length: 1146 bp
ATGTTTGCAGAGCTGCAAATGCTTACACCTTTGGTGCCCACCAGAGAAGTTTACTTCGTTAGATGTAGCAAGCAACTGAGTCCTGAACAGTGGGCTGTTGTTGATGTTTCAATTGACAAAGTTGAAGATAACATTGATGCGTCCTTGGTGAAATGCAGAAAACGTCCCTCTGGTTGCATCATCGAAGACAAATCAAACGGCCATTGCAAGGTAATCTGGGTGGAGCACTTAGAGTGCCAGAAAAGCACAGTTCAGACCATGTACCGGAGTATAGTCAACAGTGGTCTGGCATTTGGTGCAAGACATTGGGTAGCGACGCTGCAACTCCAATGCGAAAGGCTTGTTTTCTTCATGGCAACCAATGTTCCGATGAAGGATTCAACTGCCACGTTGGCTGGGAGAAAAAGCATTTTGAAAATGGCACAAAGAATGACATCAAGTTTTTGTCGCGCAATTGGAGCATCAAGCTACCATACCTGGACCAAGATCTCAAGCAAAACAGGTGATGACATTAGGATTTCCTCCAGGAAGAACTTGAACGATCCGGGAGAGCCTCTTGGTGTGATCTTGTGTGCAGTTTCTTCAGTATGGTTGCCTGTCTCTCCTTACGCCCTCTTCGATTTTTTGAGAGATGAGAATCGCAGGAACGAGTGGGACATTATGTTAAATGGGGGTCCCGCGCAAACAATTGCAAACCTATCCAAAGGACAAGATCGTGGCAATGCTGTTACTATTCAACCATGCATTTCAATCTTTCAGACAATGAAATCAAAAGAGAACAGCATGTGGATTCTACAAGATAGCTGCATAAATGCTTACGAGTCCATGGTGGTTTATGCTCCAGTGGATATCACTGGCATGCAGTCTGTGATGACAGGATGCGACTCAAGCAACATGGCCGTATTGTCTTCAGGGTTCTCAATTCTTCCAGATGGGTTGGAGTCGAGGCCTATGGTCATCACTTCCAGGCAAGAAGATCGAGGCAGTGACAGTGAAGGAGGAACTTTGCTAACCGTAGCATTTCAAGTCTTGACTAATACCTCTCCTACGGCCAAACTAACTATGGAGTCTGTTGAGTCTGCCAACACTCTTATATCATGTACTTTGAGAAATATTAAGACGAGCTTGCAGTGTGAGGATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox START

Protein Analysis

381

Amino Acids

42.07

Weight (kDa)

6.46

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
START PF01852 1 - 113 6.4e-33 START domain
PDF2_C PF25797 130 - 378 2.8e-106 PDF2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AccII CGCG 2 cut(s) 450, 680
AciI CCGC 1 cut(s) 678
AclWI GGATC 1 cut(s) 536
AcoI YGGCCR 3 cut(s) 199, 897, 1050
AcuI CTGAAG 2 cut(s) 567, 894
AfaI GTAC 2 cut(s) 263, 1102
AfiI CCNNNNNNNGG 2 cut(s) 208, 264
AgsI TTSAA 8 cut(s) 111, 125, 381, 415, 538, 737, 750, 1025
AjnI CCWGG 3 cut(s) 476, 524, 965
AluBI AGCT 4 cut(s) 13, 468, 804, 1125
AluI AGCT 4 cut(s) 13, 468, 804, 1125
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 604
AlwI GGATC 1 cut(s) 536
AoxI GGCC 4 cut(s) 199, 897, 947, 1050
ApeKI GCWGC 3 cut(s) 13, 319, 804
AspLEI GCGC 2 cut(s) 452, 682
AspS9I GGNCC 2 cut(s) 480, 674
AsuC2I CCSGG 1 cut(s) 546
AsuHPI GGTGA 2 cut(s) 160, 515
AvaII GGWCC 2 cut(s) 480, 674
BaeGI GKGCMC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 34
BbsI GAAGAC 2 cut(s) 192, 900
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 306, 791
BccI CCATC 2 cut(s) 926, 1133
BceAI ACGGC 3 cut(s) 214, 884, 1065
BcgI CGANNNNNNTGC 2 cut(s) 959, 993
BciT130I CCWGG 3 cut(s) 478, 526, 967
BcnI CCSGG 1 cut(s) 546
BcoDI GTCTC 1 cut(s) 604
BglI GCCNNNNNGGC 1 cut(s) 392
BglII AGATCT 1 cut(s) 486
BisI GCNGC 3 cut(s) 14, 320, 805
BlsI GCNGC 3 cut(s) 15, 321, 806
Bme1390I CCNGG 4 cut(s) 478, 526, 546, 967
Bme18I GGWCC 2 cut(s) 480, 674
BmgT120I GGNCC 2 cut(s) 480, 674
BmiI GGNNCC 3 cut(s) 36, 675, 676
BmrFI CCNGG 4 cut(s) 478, 526, 546, 967
BmsI GCATC 4 cut(s) 127, 186, 470, 869
BpiI GAAGAC 2 cut(s) 192, 900
BpmI CTGGAG 2 cut(s) 508, 825
BpuEI CTTGAG 2 cut(s) 475, 871
BpuMI CCSGG 1 cut(s) 546
BsaBI GATNNNNATC 1 cut(s) 636
BsaJI CCNNGG 2 cut(s) 144, 825
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 264
Bse1I ACTGG 2 cut(s) 842, 859
Bse3DI GCAATG 2 cut(s) 202, 727
Bse8I GATNNNNATC 1 cut(s) 636
BseBI CCWGG 3 cut(s) 478, 526, 967
BseDI CCNNGG 2 cut(s) 144, 825
BseGI GGATG 2 cut(s) 884, 1144
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 2 cut(s) 208, 264
BseMI GCAATG 2 cut(s) 202, 727
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 842, 859
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 2 cut(s) 306, 791
BseYI CCCAGC 1 cut(s) 395
BsgI GTGCAG 1 cut(s) 594
Bsh1236I CGCG 2 cut(s) 450, 680
BshFI GGCC 4 cut(s) 201, 899, 949, 1052
BshNI GGYRCC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 2 cut(s) 265, 545
BslFI GGGAC 3 cut(s) 150, 660, 668
BslI CCNNNNNNNGG 2 cut(s) 208, 264
BsmAI GTCTC 1 cut(s) 604
BsmFI GGGAC 3 cut(s) 150, 660, 668
BsnI GGCC 4 cut(s) 201, 899, 949, 1052
Bsp1286I GDGCHC 2 cut(s) 39, 228
Bsp143I GATC 5 cut(s) 486, 541, 564, 712, 976
Bsp19I CCATGG 1 cut(s) 825
BspACI CCGC 1 cut(s) 678
BspANI GGCC 4 cut(s) 201, 899, 949, 1052
BspCNI CTCAG 1 cut(s) 69
BspFNI CGCG 2 cut(s) 450, 680
BspLI GGNNCC 3 cut(s) 36, 675, 676
BspPI GGATC 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 34
BsrDI GCAATG 2 cut(s) 202, 727
BsrI ACTGG 2 cut(s) 842, 859
BssECI CCNNGG 2 cut(s) 144, 825
BssMI GATC 5 cut(s) 486, 541, 564, 712, 976
BssT1I CCWWGG 2 cut(s) 144, 825
Bst2UI CCWGG 3 cut(s) 478, 526, 967
Bst4CI ACNGT 5 cut(s) 90, 250, 281, 992, 1015
Bst6I CTCTTC 1 cut(s) 620
BstAPI GCANNNNNTGC 1 cut(s) 296
BstC8I GCNNGC 3 cut(s) 71, 860, 1127
BstDEI CTNAG 2 cut(s) 77, 229
BstDSI CCRYGG 1 cut(s) 825
BstF5I GGATG 2 cut(s) 884, 1144
BstFNI CGCG 2 cut(s) 450, 680
BstHHI GCGC 2 cut(s) 452, 682
BstKTI GATC 5 cut(s) 489, 544, 567, 715, 979
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 5 cut(s) 486, 541, 564, 712, 976
BstMWI GCNNNNNNNGC 6 cut(s) 19, 243, 296, 392, 458, 888
BstNI CCWGG 3 cut(s) 478, 526, 967
BstNSI RCATGY 2 cut(s) 787, 862
BstSCI CCNGG 4 cut(s) 476, 524, 544, 965
BstSLI GKGCMC 1 cut(s) 39
BstUI CGCG 2 cut(s) 450, 680
BstV1I GCAGC 2 cut(s) 306, 791
BstV2I GAAGAC 2 cut(s) 192, 900
BstX2I RGATCY 1 cut(s) 486
BstYI RGATCY 1 cut(s) 486
BsuRI GGCC 4 cut(s) 201, 899, 949, 1052
BtgI CCRYGG 1 cut(s) 825
BtsCI GGATG 2 cut(s) 884, 1144
BtsI GCAGTG 2 cut(s) 991, 1136
BtsIMutI CAGTG 7 cut(s) 95, 286, 849, 852, 991, 997, 1136
Cac8I GCNNGC 3 cut(s) 71, 860, 1127
CfoI GCGC 2 cut(s) 452, 682
Cfr13I GGNCC 2 cut(s) 480, 674
CseI GACGC 2 cut(s) 129, 325
Csp6I GTAC 2 cut(s) 262, 1101
CviAII CATG 8 cut(s) 259, 352, 741, 784, 826, 859, 895, 1098
CviQI GTAC 2 cut(s) 262, 1101
DdeI CTNAG 2 cut(s) 77, 229
DpnI GATC 5 cut(s) 488, 543, 566, 714, 978
DpnII GATC 5 cut(s) 486, 541, 564, 712, 976
EaeI YGGCCR 3 cut(s) 199, 897, 1050
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
Eco130I CCWWGG 2 cut(s) 144, 825
Eco147I AGGCCT 1 cut(s) 949
Eco32I GATATC 1 cut(s) 850
Eco47I GGWCC 2 cut(s) 480, 674
Eco57I CTGAAG 2 cut(s) 567, 894
EcoO109I RGGNCCY 1 cut(s) 674
EcoRII CCWGG 3 cut(s) 476, 524, 965
EcoRV GATATC 1 cut(s) 850
EcoT14I CCWWGG 2 cut(s) 144, 825
EcoT22I ATGCAT 1 cut(s) 746
ErhI CCWWGG 2 cut(s) 144, 825
FaeI CATG 8 cut(s) 262, 355, 744, 787, 829, 862, 898, 1101
FalI AAGNNNNNCTT 2 cut(s) 1109, 1141
FaqI GGGAC 3 cut(s) 150, 660, 668
FatI CATG 8 cut(s) 258, 351, 740, 783, 825, 858, 894, 1097
FauI CCCGC 1 cut(s) 685
Fnu4HI GCNGC 3 cut(s) 14, 320, 805
FokI GGATG 1 cut(s) 891
Fsp4HI GCNGC 3 cut(s) 14, 320, 805
GlaI GCGC 2 cut(s) 451, 681
GluI GCNGC 3 cut(s) 14, 320, 805
GsaI CCCAGC 1 cut(s) 399
GsuI CTGGAG 2 cut(s) 508, 825
HaeIII GGCC 4 cut(s) 201, 899, 949, 1052
HapII CCGG 2 cut(s) 265, 545
HgaI GACGC 2 cut(s) 129, 325
HhaI GCGC 2 cut(s) 452, 682
Hin1II CATG 8 cut(s) 262, 355, 744, 787, 829, 862, 898, 1101
Hin6I GCGC 2 cut(s) 450, 680
HinP1I GCGC 2 cut(s) 450, 680
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 9 cut(s) 79, 377, 637, 790, 821, 884, 941, 1067, 1076
HpaII CCGG 2 cut(s) 265, 545
HphI GGTGA 2 cut(s) 160, 515
Hpy166II GTNNAC 2 cut(s) 52, 277
Hpy188I TCNGA 3 cut(s) 255, 369, 759
Hpy188III TCNNGA 3 cut(s) 83, 929, 1030
Hpy8I GTNNAC 2 cut(s) 52, 277
Hpy99I CGWCG 1 cut(s) 319
HpyAV CCTTC 2 cut(s) 367, 989
HpyCH4III ACNGT 5 cut(s) 90, 250, 281, 992, 1015
HpyCH4IV ACGT 2 cut(s) 163, 389
HpyF10VI GCNNNNNNNGC 6 cut(s) 19, 243, 296, 392, 458, 888
HpyF3I CTNAG 2 cut(s) 77, 229
HpySE526I ACGT 2 cut(s) 163, 389
Hsp92II CATG 8 cut(s) 262, 355, 744, 787, 829, 862, 898, 1101
HspAI GCGC 2 cut(s) 450, 680
KflI GGGWCCC 1 cut(s) 674
Kzo9I GATC 5 cut(s) 486, 541, 564, 712, 976
LmnI GCTCC 3 cut(s) 223, 458, 844
Lsp1109I GCAGC 2 cut(s) 306, 791
LweI GCATC 4 cut(s) 127, 186, 470, 869
MaeII ACGT 2 cut(s) 163, 389
MaeIII GTNAC 2 cut(s) 727, 986
MalI GATC 5 cut(s) 488, 543, 566, 714, 978
MboI GATC 5 cut(s) 486, 541, 564, 712, 976
MboII GAAGA 9 cut(s) 137, 197, 340, 541, 573, 607, 900, 917, 986
MfeI CAATTG 3 cut(s) 111, 453, 687
MflI RGATCY 1 cut(s) 486
MhlI GDGCHC 2 cut(s) 39, 228
MluCI AATT 4 cut(s) 111, 453, 687, 921
MlyI GAGTC 6 cut(s) 88, 830, 878, 950, 1076, 1085
MmeI TCCRAC 1 cut(s) 918
MnlI CCTC 9 cut(s) 178, 532, 564, 623, 939, 974, 992, 1051, 1129
Mph1103I ATGCAT 1 cut(s) 746
MseI TTAA 2 cut(s) 665, 1116
MslI CAYNNNNRTG 1 cut(s) 857
MspI CCGG 2 cut(s) 265, 545
MspR9I CCNGG 4 cut(s) 478, 526, 546, 967
MunI CAATTG 3 cut(s) 111, 453, 687
MvaI CCWGG 3 cut(s) 478, 526, 967
MvnI CGCG 2 cut(s) 450, 680
MwoI GCNNNNNNNGC 6 cut(s) 19, 243, 296, 392, 458, 888
NciI CCSGG 1 cut(s) 546
NcoI CCATGG 1 cut(s) 825
NdeII GATC 5 cut(s) 486, 541, 564, 712, 976
NlaIII CATG 8 cut(s) 262, 355, 744, 787, 829, 862, 898, 1101
NlaIV GGNNCC 3 cut(s) 36, 675, 676
NmuCI GTSAC 1 cut(s) 986
NsiI ATGCAT 1 cut(s) 746
NspI RCATGY 2 cut(s) 787, 862
PaeI GCATGC 1 cut(s) 862
PceI AGGCCT 1 cut(s) 949
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PfeI GAWTC 3 cut(s) 377, 637, 790
PfoI TCCNGGA 2 cut(s) 524, 544
PkrI GCNGC 3 cut(s) 15, 321, 806
PleI GAGTC 6 cut(s) 87, 829, 878, 949, 1075, 1084
PpsI GAGTC 6 cut(s) 87, 829, 878, 949, 1075, 1084
PpuMI RGGWCCY 1 cut(s) 674
Psp5II RGGWCCY 1 cut(s) 674
Psp6I CCWGG 3 cut(s) 476, 524, 965
PspFI CCCAGC 1 cut(s) 395
PspGI CCWGG 3 cut(s) 476, 524, 965
PspN4I GGNNCC 3 cut(s) 36, 675, 676
PspPI GGNCC 2 cut(s) 480, 674
PspPPI RGGWCCY 1 cut(s) 674
PsuI RGATCY 1 cut(s) 486
RsaI GTAC 2 cut(s) 263, 1102
RsaNI GTAC 2 cut(s) 262, 1101
RseI CAYNNNNRTG 1 cut(s) 857
SaqAI TTAA 2 cut(s) 665, 1116
SatI GCNGC 3 cut(s) 14, 320, 805
Sau3AI GATC 5 cut(s) 486, 541, 564, 712, 976
Sau96I GGNCC 2 cut(s) 480, 674
SchI GAGTC 6 cut(s) 88, 830, 878, 950, 1076, 1085
ScrFI CCNGG 4 cut(s) 478, 526, 546, 967
SduI GDGCHC 2 cut(s) 39, 228
SfaNI GCATC 4 cut(s) 127, 186, 470, 869
SinI GGWCC 2 cut(s) 480, 674
SmiMI CAYNNNNRTG 1 cut(s) 857
SmlI CTYRAG 2 cut(s) 490, 886
SmoI CTYRAG 2 cut(s) 490, 886
SphI GCATGC 1 cut(s) 862
Sse9I AATT 4 cut(s) 111, 453, 687, 921
SseBI AGGCCT 1 cut(s) 949
SsiI CCGC 1 cut(s) 678
SspI AATATT 1 cut(s) 1114
StuI AGGCCT 1 cut(s) 949
StyD4I CCNGG 4 cut(s) 476, 524, 544, 965
StyI CCWWGG 2 cut(s) 144, 825
TaaI ACNGT 5 cut(s) 90, 250, 281, 992, 1015
TaiI ACGT 2 cut(s) 166, 392
TaqI TCGA 4 cut(s) 183, 618, 944, 979
TasI AATT 4 cut(s) 111, 453, 687, 921
TatI WGTACW 1 cut(s) 1100
TfiI GAWTC 3 cut(s) 377, 637, 790
Tru1I TTAA 2 cut(s) 665, 1116
Tru9I TTAA 2 cut(s) 665, 1116
TscAI CASTG 7 cut(s) 95, 286, 849, 859, 991, 997, 1136
TseFI GTSAC 1 cut(s) 986
TseI GCWGC 3 cut(s) 13, 319, 804
Tsp45I GTSAC 1 cut(s) 986
TspDTI ATGAA 3 cut(s) 340, 386, 779
TspRI CASTG 7 cut(s) 95, 286, 849, 859, 991, 997, 1136
VpaK11BI GGWCC 2 cut(s) 480, 674
XceI RCATGY 2 cut(s) 787, 862
XcmI CCANNNNNNNNNTGG 1 cut(s) 1060
Zsp2I ATGCAT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.