cellular process
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G13550 AT4G13550 AT4G13550 |
| fragaria_vesca | FvH4_4g05250 FvH4_4g05250 |
| malus_domestica | MD13G1226600.v1.1 |
| prunus_persica | Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 |
| pyrus_communis | pycom13g19960 |
| rosa_chinensis | RchiOBHm_Chr4g0396161 |
| rosa_laevigata | RLG00000009564 |
| rosa_multiflora | Rmu_sc0006325.1_g000041 |
| rosa_roxburghii | Rroxscaffold_5G00341010 |
| rosa_rugosa | Rorug03G0351200 Rorug03G0351300 Rorug03G0351300 |
| rosa_samantha | Rh4BG065200 Rh4CG072000 Rh4DG062000 |
| rosa_wichuraiana | Rw4G005390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1718, 2199 |
| AarI | CACCTGC | 1 cut(s) | 1762 |
| Acc36I | ACCTGC | 3 cut(s) | 448, 583, 1762 |
| AccII | CGCG | 1 cut(s) | 2127 |
| AciI | CCGC | 4 cut(s) | 43, 2027, 2127, 2263 |
| AclWI | GGATC | 6 cut(s) | 443, 456, 461, 1976, 1982, 2167 |
| AcoI | YGGCCR | 1 cut(s) | 267 |
| AcsI | RAATTY | 8 cut(s) | 171, 679, 884, 1180, 1229, 1727, 2183, 2408 |
| AcuI | CTGAAG | 1 cut(s) | 538 |
| AcvI | CACGTG | 1 cut(s) | 881 |
| AfaI | GTAC | 3 cut(s) | 384, 693, 2384 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1033, 2171, 2269 |
| AflII | CTTAAG | 1 cut(s) | 1945 |
| AjiI | CACGTC | 1 cut(s) | 1018 |
| AjnI | CCWGG | 2 cut(s) | 1620, 2361 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 885, 917 |
| AleI | CACNNNNGTG | 2 cut(s) | 45, 1772 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 451, 483 |
| Alw21I | GWGCWC | 1 cut(s) | 1630 |
| Alw26I | GTCTC | 4 cut(s) | 1902, 2235, 2307, 2444 |
| AlwI | GGATC | 6 cut(s) | 443, 456, 461, 1976, 1982, 2167 |
| AoxI | GGCC | 7 cut(s) | 76, 245, 267, 297, 427, 664, 1384 |
| ApoI | RAATTY | 8 cut(s) | 171, 679, 884, 1180, 1229, 1727, 2183, 2408 |
| AseI | ATTAAT | 1 cut(s) | 1209 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1923 |
| AspA2I | CCTAGG | 1 cut(s) | 2165 |
| AspLEI | GCGC | 3 cut(s) | 105, 2127, 2398 |
| AspS9I | GGNCC | 3 cut(s) | 796, 1385, 1444 |
| AsuC2I | CCSGG | 2 cut(s) | 124, 1798 |
| AsuHPI | GGTGA | 3 cut(s) | 1169, 2378, 2432 |
| AsuNHI | GCTAGC | 2 cut(s) | 1613, 1870 |
| AvaII | GGWCC | 2 cut(s) | 796, 1444 |
| AvrII | CCTAGG | 1 cut(s) | 2165 |
| BamHI | GGATCC | 1 cut(s) | 448 |
| BanII | GRGCYC | 1 cut(s) | 1630 |
| BbrPI | CACGTG | 1 cut(s) | 881 |
| BbsI | GAAGAC | 1 cut(s) | 1404 |
| Bbv12I | GWGCWC | 1 cut(s) | 1630 |
| BbvCI | CCTCAGC | 1 cut(s) | 228 |
| BceAI | ACGGC | 2 cut(s) | 91, 254 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1592, 1626 |
| BciT130I | CCWGG | 2 cut(s) | 1622, 2363 |
| BciVI | GTATCC | 1 cut(s) | 1552 |
| BcnI | CCSGG | 2 cut(s) | 124, 1798 |
| BcoDI | GTCTC | 4 cut(s) | 1902, 2235, 2307, 2444 |
| BfmI | CTRYAG | 5 cut(s) | 301, 345, 590, 1494, 1656 |
| BfrI | CTTAAG | 1 cut(s) | 1945 |
| BfuAI | ACCTGC | 3 cut(s) | 448, 583, 1762 |
| BfuI | GTATCC | 1 cut(s) | 1552 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1673 |
| BglII | AGATCT | 1 cut(s) | 390 |
| BlnI | CCTAGG | 1 cut(s) | 2165 |
| BlpI | GCTNAGC | 1 cut(s) | 2022 |
| Bme1390I | CCNGG | 4 cut(s) | 124, 1622, 1798, 2363 |
| Bme18I | GGWCC | 2 cut(s) | 796, 1444 |
| BmgBI | CACGTC | 1 cut(s) | 1018 |
| BmgT120I | GGNCC | 3 cut(s) | 796, 1385, 1444 |
| BmiI | GGNNCC | 5 cut(s) | 450, 797, 798, 1051, 1445 |
| BmrFI | CCNGG | 4 cut(s) | 124, 1622, 1798, 2363 |
| BmsI | GCATC | 8 cut(s) | 331, 598, 660, 1328, 1570, 1674, 1714, 2383 |
| BmtI | GCTAGC | 2 cut(s) | 1617, 1874 |
| BpiI | GAAGAC | 1 cut(s) | 1404 |
| BpmI | CTGGAG | 3 cut(s) | 1332, 2242, 2370 |
| Bpu10I | CCTNAGC | 2 cut(s) | 228, 1629 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2022 |
| BpuMI | CCSGG | 2 cut(s) | 124, 1798 |
| BsaAI | YACGTR | 3 cut(s) | 386, 475, 881 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1973 |
| BsaI | GGTCTC | 1 cut(s) | 2307 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1033, 2171, 2269 |
| Bse118I | RCCGGY | 1 cut(s) | 281 |
| Bse1I | ACTGG | 3 cut(s) | 699, 832, 2059 |
| Bse3DI | GCAATG | 2 cut(s) | 1573, 2528 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1973 |
| BseBI | CCWGG | 2 cut(s) | 1622, 2363 |
| BseGI | GGATG | 3 cut(s) | 613, 1270, 1705 |
| BseJI | GATNNNNATC | 1 cut(s) | 1973 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1033, 2171, 2269 |
| BseMI | GCAATG | 2 cut(s) | 1573, 2528 |
| BseMII | CTCAG | 5 cut(s) | 198, 219, 1347, 1643, 2013 |
| BseNI | ACTGG | 3 cut(s) | 699, 832, 2059 |
| BseRI | GAGGAG | 2 cut(s) | 785, 805 |
| BseYI | CCCAGC | 1 cut(s) | 1880 |
| BsgI | GTGCAG | 2 cut(s) | 2015, 2475 |
| Bsh1236I | CGCG | 1 cut(s) | 2127 |
| BshFI | GGCC | 7 cut(s) | 78, 247, 269, 299, 429, 666, 1386 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1630 |
| BsiSI | CCGG | 3 cut(s) | 123, 282, 1798 |
| BslFI | GGGAC | 5 cut(s) | 538, 782, 1457, 2243, 2500 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1033, 2171, 2269 |
| BsmAI | GTCTC | 4 cut(s) | 1902, 2235, 2307, 2444 |
| BsmFI | GGGAC | 5 cut(s) | 538, 782, 1457, 2243, 2500 |
| BsmI | GAATGC | 2 cut(s) | 290, 649 |
| BsnI | GGCC | 7 cut(s) | 78, 247, 269, 299, 429, 666, 1386 |
| Bso31I | GGTCTC | 1 cut(s) | 2307 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1630 |
| Bsp143I | GATC | 8 cut(s) | 390, 448, 466, 1968, 1974, 2014, 2159, 2546 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2022 |
| Bsp19I | CCATGG | 3 cut(s) | 444, 452, 1668 |
| BspACI | CCGC | 4 cut(s) | 43, 2027, 2127, 2263 |
| BspANI | GGCC | 7 cut(s) | 78, 247, 269, 299, 429, 666, 1386 |
| BspCNI | CTCAG | 5 cut(s) | 199, 220, 1346, 1642, 2014 |
| BspFNI | CGCG | 1 cut(s) | 2127 |
| BspHI | TCATGA | 1 cut(s) | 1986 |
| BspLI | GGNNCC | 5 cut(s) | 450, 797, 798, 1051, 1445 |
| BspMAI | CTGCAG | 4 cut(s) | 349, 594, 1498, 1660 |
| BspMI | ACCTGC | 3 cut(s) | 448, 583, 1762 |
| BspOI | GCTAGC | 2 cut(s) | 1617, 1874 |
| BspPI | GGATC | 6 cut(s) | 443, 456, 461, 1976, 1982, 2167 |
| BspTI | CTTAAG | 1 cut(s) | 1945 |
| BspTNI | GGTCTC | 1 cut(s) | 2307 |
| BsrDI | GCAATG | 2 cut(s) | 1573, 2528 |
| BsrFI | RCCGGY | 1 cut(s) | 281 |
| BsrI | ACTGG | 3 cut(s) | 699, 832, 2059 |
| BssAI | RCCGGY | 1 cut(s) | 281 |
| BssMI | GATC | 8 cut(s) | 390, 448, 466, 1968, 1974, 2014, 2159, 2546 |
| BssT1I | CCWWGG | 5 cut(s) | 444, 452, 1668, 2165, 2328 |
| Bst2UI | CCWGG | 2 cut(s) | 1622, 2363 |
| Bst4CI | ACNGT | 5 cut(s) | 361, 871, 1937, 2257, 2279 |
| Bst6I | CTCTTC | 1 cut(s) | 1548 |
| BstAFI | CTTAAG | 1 cut(s) | 1945 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1529, 1664 |
| BstBAI | YACGTR | 3 cut(s) | 386, 475, 881 |
| BstDEI | CTNAG | 7 cut(s) | 207, 228, 1333, 1629, 1747, 2022, 2318 |
| BstDSI | CCRYGG | 5 cut(s) | 73, 270, 444, 452, 1668 |
| BstEII | GGTNACC | 1 cut(s) | 2357 |
| BstF5I | GGATG | 3 cut(s) | 613, 1270, 1705 |
| BstFNI | CGCG | 1 cut(s) | 2127 |
| BstHHI | GCGC | 3 cut(s) | 105, 2127, 2398 |
| BstKTI | GATC | 8 cut(s) | 393, 451, 469, 1971, 1977, 2017, 2162, 2549 |
| BstMAI | GTCTC | 4 cut(s) | 1902, 2235, 2307, 2444 |
| BstMBI | GATC | 8 cut(s) | 390, 448, 466, 1968, 1974, 2014, 2159, 2546 |
| BstNI | CCWGG | 2 cut(s) | 1622, 2363 |
| BstNSI | RCATGY | 1 cut(s) | 2045 |
| BstPI | GGTNACC | 1 cut(s) | 2357 |
| BstSCI | CCNGG | 4 cut(s) | 122, 1620, 1796, 2361 |
| BstSFI | CTRYAG | 5 cut(s) | 301, 345, 590, 1494, 1656 |
| BstUI | CGCG | 1 cut(s) | 2127 |
| BstV2I | GAAGAC | 1 cut(s) | 1404 |
| BstX2I | RGATCY | 3 cut(s) | 390, 448, 2159 |
| BstYI | RGATCY | 3 cut(s) | 390, 448, 2159 |
| BsuI | GTATCC | 1 cut(s) | 1552 |
| BsuRI | GGCC | 7 cut(s) | 78, 247, 269, 299, 429, 666, 1386 |
| BtgI | CCRYGG | 5 cut(s) | 73, 270, 444, 452, 1668 |
| BtgZI | GCGATG | 1 cut(s) | 1697 |
| BtrI | CACGTC | 1 cut(s) | 1018 |
| BtsCI | GGATG | 3 cut(s) | 613, 1270, 1705 |
| BtsI | GCAGTG | 2 cut(s) | 98, 2583 |
| BtsIMutI | CAGTG | 6 cut(s) | 98, 366, 867, 1942, 2410, 2583 |
| BveI | ACCTGC | 3 cut(s) | 448, 583, 1762 |
| CciI | TCATGA | 1 cut(s) | 1986 |
| CfoI | GCGC | 3 cut(s) | 105, 2127, 2398 |
| Cfr10I | RCCGGY | 1 cut(s) | 281 |
| Cfr13I | GGNCC | 3 cut(s) | 796, 1385, 1444 |
| Csp6I | GTAC | 3 cut(s) | 383, 692, 2383 |
| CviQI | GTAC | 3 cut(s) | 383, 692, 2383 |
| DdeI | CTNAG | 7 cut(s) | 207, 228, 1333, 1629, 1747, 2022, 2318 |
| DpnI | GATC | 8 cut(s) | 392, 450, 468, 1970, 1976, 2016, 2161, 2548 |
| DpnII | GATC | 8 cut(s) | 390, 448, 466, 1968, 1974, 2014, 2159, 2546 |
| EaeI | YGGCCR | 1 cut(s) | 267 |
| Eam1104I | CTCTTC | 1 cut(s) | 1548 |
| EarI | CTCTTC | 1 cut(s) | 1548 |
| Ecl136II | GAGCTC | 1 cut(s) | 1628 |
| Eco130I | CCWWGG | 5 cut(s) | 444, 452, 1668, 2165, 2328 |
| Eco147I | AGGCCT | 4 cut(s) | 247, 299, 429, 666 |
| Eco24I | GRGCYC | 1 cut(s) | 1630 |
| Eco31I | GGTCTC | 1 cut(s) | 2307 |
| Eco32I | GATATC | 1 cut(s) | 259 |
| Eco47I | GGWCC | 2 cut(s) | 796, 1444 |
| Eco53kI | GAGCTC | 1 cut(s) | 1628 |
| Eco57I | CTGAAG | 1 cut(s) | 538 |
| Eco72I | CACGTG | 1 cut(s) | 881 |
| Eco91I | GGTNACC | 1 cut(s) | 2357 |
| EcoICRI | GAGCTC | 1 cut(s) | 1628 |
| EcoO109I | RGGNCCY | 2 cut(s) | 796, 1444 |
| EcoO65I | GGTNACC | 1 cut(s) | 2357 |
| EcoRII | CCWGG | 2 cut(s) | 1620, 2361 |
| EcoRV | GATATC | 1 cut(s) | 259 |
| EcoT14I | CCWWGG | 5 cut(s) | 444, 452, 1668, 2165, 2328 |
| EcoT38I | GRGCYC | 1 cut(s) | 1630 |
| ErhI | CCWWGG | 5 cut(s) | 444, 452, 1668, 2165, 2328 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 235, 267, 1512, 1544 |
| FaqI | GGGAC | 5 cut(s) | 538, 782, 1457, 2243, 2500 |
| FauI | CCCGC | 1 cut(s) | 2270 |
| FauNDI | CATATG | 1 cut(s) | 1954 |
| FokI | GGATG | 3 cut(s) | 620, 1277, 1692 |
| FriOI | GRGCYC | 1 cut(s) | 1630 |
| GlaI | GCGC | 3 cut(s) | 104, 2126, 2397 |
| GsaI | CCCAGC | 1 cut(s) | 1884 |
| GsuI | CTGGAG | 3 cut(s) | 1332, 2242, 2370 |
| HaeIII | GGCC | 7 cut(s) | 78, 247, 269, 299, 429, 666, 1386 |
| HapII | CCGG | 3 cut(s) | 123, 282, 1798 |
| HhaI | GCGC | 3 cut(s) | 105, 2127, 2398 |
| Hin6I | GCGC | 3 cut(s) | 103, 2125, 2396 |
| HinP1I | GCGC | 3 cut(s) | 103, 2125, 2396 |
| HincII | GTYRAC | 1 cut(s) | 745 |
| HindII | GTYRAC | 1 cut(s) | 745 |
| HindIII | AAGCTT | 2 cut(s) | 92, 1607 |
| HinfI | GANTC | 9 cut(s) | 374, 943, 1094, 1331, 1345, 1405, 1463, 1790, 1958 |
| HpaII | CCGG | 3 cut(s) | 123, 282, 1798 |
| HphI | GGTGA | 3 cut(s) | 1169, 2378, 2432 |
| Hpy166II | GTNNAC | 5 cut(s) | 745, 1933, 2233, 2299, 2385 |
| Hpy8I | GTNNAC | 5 cut(s) | 745, 1933, 2233, 2299, 2385 |
| Hpy99I | CGWCG | 1 cut(s) | 1762 |
| HpyCH4III | ACNGT | 5 cut(s) | 361, 871, 1937, 2257, 2279 |
| HpyCH4IV | ACGT | 4 cut(s) | 385, 474, 880, 1017 |
| HpyF3I | CTNAG | 7 cut(s) | 207, 228, 1333, 1629, 1747, 2022, 2318 |
| HpySE526I | ACGT | 4 cut(s) | 385, 474, 880, 1017 |
| HspAI | GCGC | 3 cut(s) | 103, 2125, 2396 |
| KflI | GGGWCCC | 1 cut(s) | 796 |
| Kzo9I | GATC | 8 cut(s) | 390, 448, 466, 1968, 1974, 2014, 2159, 2546 |
| LmnI | GCTCC | 6 cut(s) | 75, 1080, 1539, 1622, 1625, 1879 |
| LweI | GCATC | 8 cut(s) | 331, 598, 660, 1328, 1570, 1674, 1714, 2383 |
| MaeII | ACGT | 4 cut(s) | 385, 474, 880, 1017 |
| MaeIII | GTNAC | 9 cut(s) | 136, 619, 729, 1299, 2050, 2140, 2174, 2273, 2357 |
| MalI | GATC | 8 cut(s) | 392, 450, 468, 1970, 1976, 2016, 2161, 2548 |
| MboI | GATC | 8 cut(s) | 390, 448, 466, 1968, 1974, 2014, 2159, 2546 |
| MboII | GAAGA | 7 cut(s) | 952, 1404, 1565, 1586, 1785, 1931, 2522 |
| MfeI | CAATTG | 1 cut(s) | 1998 |
| MflI | RGATCY | 3 cut(s) | 390, 448, 2159 |
| MhlI | GDGCHC | 1 cut(s) | 1630 |
| MlyI | GAGTC | 3 cut(s) | 383, 1325, 1339 |
| MmeI | TCCRAC | 1 cut(s) | 602 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1923 |
| MslI | CAYNNNNRTG | 3 cut(s) | 45, 1772, 2046 |
| MspA1I | CMGCKG | 2 cut(s) | 45, 2029 |
| MspCI | CTTAAG | 1 cut(s) | 1945 |
| MspI | CCGG | 3 cut(s) | 123, 282, 1798 |
| MspR9I | CCNGG | 4 cut(s) | 124, 1622, 1798, 2363 |
| MunI | CAATTG | 1 cut(s) | 1998 |
| Mva1269I | GAATGC | 2 cut(s) | 290, 649 |
| MvaI | CCWGG | 2 cut(s) | 1622, 2363 |
| MvnI | CGCG | 1 cut(s) | 2127 |
| NciI | CCSGG | 2 cut(s) | 124, 1798 |
| NcoI | CCATGG | 3 cut(s) | 444, 452, 1668 |
| NdeI | CATATG | 1 cut(s) | 1954 |
| NdeII | GATC | 8 cut(s) | 390, 448, 466, 1968, 1974, 2014, 2159, 2546 |
| NheI | GCTAGC | 2 cut(s) | 1613, 1870 |
| NlaIV | GGNNCC | 5 cut(s) | 450, 797, 798, 1051, 1445 |
| NmuCI | GTSAC | 2 cut(s) | 1299, 2140 |
| NspI | RCATGY | 1 cut(s) | 2045 |
| OliI | CACNNNNGTG | 2 cut(s) | 45, 1772 |
| PagI | TCATGA | 1 cut(s) | 1986 |
| PaqCI | CACCTGC | 1 cut(s) | 1762 |
| PasI | CCCWGGG | 1 cut(s) | 1621 |
| PceI | AGGCCT | 4 cut(s) | 247, 299, 429, 666 |
| PctI | GAATGC | 2 cut(s) | 290, 649 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1923 |
| PfeI | GAWTC | 6 cut(s) | 943, 1094, 1405, 1463, 1790, 1958 |
| PfoI | TCCNGGA | 2 cut(s) | 122, 1796 |
| PleI | GAGTC | 3 cut(s) | 382, 1325, 1339 |
| PmaCI | CACGTG | 1 cut(s) | 881 |
| PmlI | CACGTG | 1 cut(s) | 881 |
| PpsI | GAGTC | 3 cut(s) | 382, 1325, 1339 |
| Ppu21I | YACGTR | 3 cut(s) | 386, 475, 881 |
| PpuMI | RGGWCCY | 2 cut(s) | 796, 1444 |
| PshBI | ATTAAT | 1 cut(s) | 1209 |
| PsiI | TTATAA | 2 cut(s) | 1718, 2199 |
| Psp124BI | GAGCTC | 1 cut(s) | 1630 |
| Psp5II | RGGWCCY | 2 cut(s) | 796, 1444 |
| Psp6I | CCWGG | 2 cut(s) | 1620, 2361 |
| PspCI | CACGTG | 1 cut(s) | 881 |
| PspEI | GGTNACC | 1 cut(s) | 2357 |
| PspFI | CCCAGC | 1 cut(s) | 1880 |
| PspGI | CCWGG | 2 cut(s) | 1620, 2361 |
| PspN4I | GGNNCC | 5 cut(s) | 450, 797, 798, 1051, 1445 |
| PspPI | GGNCC | 3 cut(s) | 796, 1385, 1444 |
| PspPPI | RGGWCCY | 2 cut(s) | 796, 1444 |
| PstI | CTGCAG | 4 cut(s) | 349, 594, 1498, 1660 |
| PsuI | RGATCY | 3 cut(s) | 390, 448, 2159 |
| RsaI | GTAC | 3 cut(s) | 384, 693, 2384 |
| RsaNI | GTAC | 3 cut(s) | 383, 692, 2383 |
| RseI | CAYNNNNRTG | 3 cut(s) | 45, 1772, 2046 |
| SacI | GAGCTC | 1 cut(s) | 1630 |
| Sau3AI | GATC | 8 cut(s) | 390, 448, 466, 1968, 1974, 2014, 2159, 2546 |
| Sau96I | GGNCC | 3 cut(s) | 796, 1385, 1444 |
| SchI | GAGTC | 3 cut(s) | 383, 1325, 1339 |
| ScrFI | CCNGG | 4 cut(s) | 124, 1622, 1798, 2363 |
| SduI | GDGCHC | 1 cut(s) | 1630 |
| SfaNI | GCATC | 8 cut(s) | 331, 598, 660, 1328, 1570, 1674, 1714, 2383 |
| SfcI | CTRYAG | 5 cut(s) | 301, 345, 590, 1494, 1656 |
| SinI | GGWCC | 2 cut(s) | 796, 1444 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 45, 1772, 2046 |
| SmlI | CTYRAG | 1 cut(s) | 1945 |
| SmoI | CTYRAG | 1 cut(s) | 1945 |
| SseBI | AGGCCT | 4 cut(s) | 247, 299, 429, 666 |
| SsiI | CCGC | 4 cut(s) | 43, 2027, 2127, 2263 |
| SspI | AATATT | 3 cut(s) | 322, 2338, 2445 |
| SstI | GAGCTC | 1 cut(s) | 1630 |
| StuI | AGGCCT | 4 cut(s) | 247, 299, 429, 666 |
| StyD4I | CCNGG | 4 cut(s) | 122, 1620, 1796, 2361 |
| StyI | CCWWGG | 5 cut(s) | 444, 452, 1668, 2165, 2328 |
| TaaI | ACNGT | 5 cut(s) | 361, 871, 1937, 2257, 2279 |
| TaiI | ACGT | 4 cut(s) | 388, 477, 883, 1020 |
| TaqI | TCGA | 3 cut(s) | 294, 2436, 2549 |
| TatI | WGTACW | 2 cut(s) | 691, 2382 |
| TauI | GCSGC | 1 cut(s) | 2029 |
| TfiI | GAWTC | 6 cut(s) | 943, 1094, 1405, 1463, 1790, 1958 |
| TscAI | CASTG | 6 cut(s) | 105, 366, 874, 1942, 2410, 2583 |
| TseFI | GTSAC | 2 cut(s) | 1299, 2140 |
| Tsp45I | GTSAC | 2 cut(s) | 1299, 2140 |
| TspDTI | ATGAA | 8 cut(s) | 255, 777, 1218, 1652, 2003, 2094, 2429, 2601 |
| TspGWI | ACGGA | 1 cut(s) | 809 |
| TspRI | CASTG | 6 cut(s) | 105, 366, 874, 1942, 2410, 2583 |
| Vha464I | CTTAAG | 1 cut(s) | 1945 |
| VpaK11BI | GGWCC | 2 cut(s) | 796, 1444 |
| VspI | ATTAAT | 1 cut(s) | 1209 |
| XapI | RAATTY | 8 cut(s) | 171, 679, 884, 1180, 1229, 1727, 2183, 2408 |
| XceI | RCATGY | 1 cut(s) | 2045 |
| XmaJI | CCTAGG | 1 cut(s) | 2165 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1923 |