Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008343

Physical Location & Seq

Genomic Coordinates Reverse (-)

42932828 .. 42935865

Gene Structure 3038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0351200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCTTCACTGGTGATTTACTATTTGTCTCAGCAGCGTCTTCCCAGAAGCTTTTTCTTGATACCCACCAGCTTGGCCCTCGTAACCTCTCTTCTCATCCTCTTTTACATTTCCACAACCTCAAATCTCTTCCCTCATCATCCTCCCCAACCCAGTCTATCTTCCTTTGCTCATCATCTCATCATCCCATCTCAAAGTCAACGCTCACTACCACCTAACTCGGCCCCAAATGGAAACAACGAGGTGTTCCATGATACAGATATCTTTCTTCAAGACTATAAAGAAATGAAAAGGAGCTTTAAGATATATGTTTATCCTCACAGGAAAGATGATCCCTTTGCAAATGCACTTTTGCCTGTGGATTTCGAACCTGCGGGTAATTATGCCAGTGAAAGTTACTTCAAGAAGGTCCTGTTGAAGAGTCATTTCATCACAAAAGATCCAACCAAGGCACATCTTTTCTTTTTACCTTTCTCTATTGCAAGGTTGCGGCACGACACCAGAGTTGGAGTGGCAGGTATCCAAGATTTTGTAAGAGATTACATCTTCAATATTAGTCACAAGTACGAATATTGGAACCGGACTGGTGGAGCAGATCATTTTTATGTTGCTTGTCATTCTATTGGACGCTCAGCTATGGAAAAAGCAACCCAAGTCAAATTTAATGCCATTCAAGTTGTGTGCTCTTCTAGTTACTTCCTATCTGGGTACATTACTCACAAGGATGCATGTCTGCCTCAAATATGGCCCAGAAAAGAAGAGCCCCCTAATCTTCTATCATCAAATAGAACAAAACTTGCATTCTTTGCCGGAGGAATTAACTCCCCAGTACGGGAAAGGCTTCTTCAAGTTTGGAGAAATGACCCTGAGATTTTTGTGCACTTTGGTCGGCTTAAAACATCTTATGCTGATGCGATGCTTGGTAGCATGTTCTGTCTCCACGTTAAAGGATTTGAAGTAAATACAGCTCGTATTGCAGATTCATTGTATTATGGCTGTGTCCCAGTGATAATTGCCAACTACTATGATTTACCATTTGCAGACATACTAAACTGGAAGAGCTTCTCAGTCGTTGTTGCCACTCTAGATATCCCGTTGCTTAAGAAGATCCTTAAAGGAATCAGCTCCAACGAATACATGAGGTTGAAAAGCAATGTGTTGAAGGTGCGCAAACAGTTCCAATGGCACCTTTTACCTACTGATTATGATGCTTTTAACATGGTTATGTACGAGTTGTGGCTCCGTCGGAGTTTTTCAACAGTTTCCTTGAGCACTTTTGAACATTCCAAATCAACAAATGATTTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Lipase_3

Protein Analysis

436

Amino Acids

50.18

Weight (kDa)

9.29

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	97 - 372	9.4e-68	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13550 AT4G13550 AT4G13550
fragaria_vesca	FvH4_4g05250 FvH4_4g05250
malus_domestica	MD13G1226600.v1.1
prunus_persica	Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1
pyrus_communis	pycom13g19960
rosa_chinensis	RchiOBHm_Chr4g0396161
rosa_laevigata	RLG00000009564
rosa_multiflora	Rmu_sc0006325.1_g000041
rosa_roxburghii	Rroxscaffold_5G00341010
rosa_rugosa	Rorug03G0351200 Rorug03G0351300 Rorug03G0351300
rosa_samantha	Rh4BG065200 Rh4CG072000 Rh4DG062000
rosa_wichuraiana	Rw4G005390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1169
Acc36I	ACCTGC	2 cut(s)	379, 506
AccB1I	GGYRCC	1 cut(s)	1185
AciI	CCGC	2 cut(s)	374, 490
AclWI	GGATC	3 cut(s)	326, 434, 1102
AcsI	RAATTY	1 cut(s)	659
AfaI	GTAC	4 cut(s)	566, 710, 831, 1229
AfiI	CCNNNNNNNGG	2 cut(s)	831, 832
AflII	CTTAAG	1 cut(s)	1100
AluBI	AGCT	7 cut(s)	51, 72, 297, 635, 968, 1062, 1125
AluI	AGCT	7 cut(s)	51, 72, 297, 635, 968, 1062, 1125
Alw21I	GWGCWC	3 cut(s)	686, 882, 1274
Alw26I	GTCTC	2 cut(s)	33, 941
Alw44I	GTGCAC	1 cut(s)	878
AlwI	GGATC	3 cut(s)	326, 434, 1102
AoxI	GGCC	3 cut(s)	75, 222, 746
ApaLI	GTGCAC	1 cut(s)	878
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	659
Asp700I	GAANNNNTTC	2 cut(s)	840, 1061
AspLEI	GCGC	1 cut(s)	1170
AspS9I	GGNCC	4 cut(s)	76, 223, 409, 747
AsuHPI	GGTGA	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	882
BanI	GGYRCC	1 cut(s)	1185
BanII	GRGCYC	1 cut(s)	765
BarI	GAAGNNNNNNTAC	2 cut(s)	75, 107
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	3 cut(s)	686, 882, 1274
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	196
BcgI	CGANNNNNNTGC	2 cut(s)	869, 903
BciVI	GTATCC	1 cut(s)	530
BcoDI	GTCTC	2 cut(s)	33, 941
BfaI	CTAG	2 cut(s)	690, 1085
BfrI	CTTAAG	1 cut(s)	1100
BfuAI	ACCTGC	2 cut(s)	379, 506
BfuI	GTATCC	1 cut(s)	530
BisI	GCNGC	2 cut(s)	35, 491
BlpI	GCTNAGC	1 cut(s)	631
BlsI	GCNGC	2 cut(s)	36, 492
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	4 cut(s)	76, 223, 409, 747
BmiI	GGNNCC	4 cut(s)	225, 578, 1187, 1241
BmrI	ACTGGG	3 cut(s)	147, 821, 998
BmsI	GCATC	4 cut(s)	715, 901, 906, 1198
BmuI	ACTGGG	3 cut(s)	147, 821, 998
BpiI	GAAGAC	1 cut(s)	32
Bpu1102I	GCTNAGC	1 cut(s)	631
Bpu14I	TTCGAA	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	1288
BsaJI	CCNNGG	1 cut(s)	447
BsaWI	WCCGGW	1 cut(s)	579
Bsc4I	CCNNNNNNNGG	2 cut(s)	831, 832
Bse1I	ACTGG	7 cut(s)	15, 153, 387, 589, 827, 1004, 1058
Bse3DI	GCAATG	1 cut(s)	1159
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	4 cut(s)	96, 139, 183, 730
BseLI	CCNNNNNNNGG	2 cut(s)	831, 832
BseMI	GCAATG	1 cut(s)	1159
BseMII	CTCAG	4 cut(s)	44, 645, 858, 1080
BseNI	ACTGG	7 cut(s)	15, 153, 387, 589, 827, 1004, 1058
BseSI	GKGCMC	1 cut(s)	882
BseXI	GCAGC	1 cut(s)	46
BshFI	GGCC	3 cut(s)	77, 224, 748
BshNI	GGYRCC	1 cut(s)	1185
BsiHKAI	GWGCWC	3 cut(s)	686, 882, 1274
BsiSI	CCGG	2 cut(s)	580, 810
BslFI	GGGAC	1 cut(s)	986
BslI	CCNNNNNNNGG	2 cut(s)	831, 832
BsmAI	GTCTC	2 cut(s)	33, 941
BsmFI	GGGAC	1 cut(s)	986
BsmI	GAATGC	1 cut(s)	800
BsnI	GGCC	3 cut(s)	77, 224, 748
Bsp119I	TTCGAA	1 cut(s)	366
Bsp1286I	GDGCHC	4 cut(s)	686, 765, 882, 1274
Bsp143I	GATC	4 cut(s)	331, 439, 595, 1107
Bsp1720I	GCTNAGC	1 cut(s)	631
BspACI	CCGC	2 cut(s)	374, 490
BspANI	GGCC	3 cut(s)	77, 224, 748
BspCNI	CTCAG	4 cut(s)	43, 644, 859, 1079
BspLI	GGNNCC	4 cut(s)	225, 578, 1187, 1241
BspMI	ACCTGC	2 cut(s)	379, 506
BspPI	GGATC	3 cut(s)	326, 434, 1102
BspQI	GCTCTTC	3 cut(s)	691, 753, 1052
BspT104I	TTCGAA	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	1185
BspTI	CTTAAG	1 cut(s)	1100
BsrDI	GCAATG	1 cut(s)	1159
BsrI	ACTGG	7 cut(s)	15, 153, 387, 589, 827, 1004, 1058
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	4 cut(s)	331, 439, 595, 1107
BssT1I	CCWWGG	1 cut(s)	447
Bst4CI	ACNGT	2 cut(s)	1176, 1261
Bst6I	CTCTTC	6 cut(s)	96, 134, 413, 691, 753, 1052
BstAFI	CTTAAG	1 cut(s)	1100
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstBI	TTCGAA	1 cut(s)	366
BstDEI	CTNAG	4 cut(s)	30, 631, 867, 1066
BstF5I	GGATG	4 cut(s)	96, 139, 183, 730
BstHHI	GCGC	1 cut(s)	1170
BstKTI	GATC	4 cut(s)	334, 442, 598, 1110
BstMAI	GTCTC	2 cut(s)	33, 941
BstMBI	GATC	4 cut(s)	331, 439, 595, 1107
BstMWI	GCNNNNNNNGC	2 cut(s)	806, 974
BstNSI	RCATGY	2 cut(s)	732, 931
BstSLI	GKGCMC	1 cut(s)	882
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	2 cut(s)	439, 1107
BstXI	CCANNNNNNTGG	1 cut(s)	73
BstYI	RGATCY	2 cut(s)	439, 1107
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	77, 224, 748
BtgZI	GCGATG	1 cut(s)	929
BtsCI	GGATG	4 cut(s)	96, 139, 183, 730
BtsIMutI	CAGTG	3 cut(s)	8, 394, 1011
BveI	ACCTGC	2 cut(s)	379, 506
CfoI	GCGC	1 cut(s)	1170
Cfr13I	GGNCC	4 cut(s)	76, 223, 409, 747
CseI	GACGC	2 cut(s)	26, 636
Csp6I	GTAC	4 cut(s)	565, 709, 830, 1228
CviAII	CATG	6 cut(s)	251, 729, 928, 1138, 1219, 1308
CviQI	GTAC	4 cut(s)	565, 709, 830, 1228
DdeI	CTNAG	4 cut(s)	30, 631, 867, 1066
DpnI	GATC	4 cut(s)	333, 441, 597, 1109
DpnII	GATC	4 cut(s)	331, 439, 595, 1107
Eam1104I	CTCTTC	6 cut(s)	96, 134, 413, 691, 753, 1052
EarI	CTCTTC	6 cut(s)	96, 134, 413, 691, 753, 1052
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	765
Eco32I	GATATC	2 cut(s)	262, 1090
Eco47I	GGWCC	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	409
EcoRV	GATATC	2 cut(s)	262, 1090
EcoT14I	CCWWGG	1 cut(s)	447
EcoT22I	ATGCAT	1 cut(s)	730
EcoT38I	GRGCYC	1 cut(s)	765
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	6 cut(s)	254, 732, 931, 1141, 1222, 1311
FaqI	GGGAC	1 cut(s)	986
FatI	CATG	6 cut(s)	250, 728, 927, 1137, 1218, 1307
FauI	CCCGC	1 cut(s)	367
Fnu4HI	GCNGC	2 cut(s)	35, 491
FokI	GGATG	4 cut(s)	83, 126, 170, 737
FriOI	GRGCYC	1 cut(s)	765
Fsp4HI	GCNGC	2 cut(s)	35, 491
FspBI	CTAG	2 cut(s)	690, 1085
FspI	TGCGCA	1 cut(s)	1169
GlaI	GCGC	1 cut(s)	1169
GluI	GCNGC	2 cut(s)	35, 491
HaeIII	GGCC	3 cut(s)	77, 224, 748
HapII	CCGG	2 cut(s)	580, 810
HgaI	GACGC	2 cut(s)	26, 636
HhaI	GCGC	1 cut(s)	1170
Hin1II	CATG	6 cut(s)	254, 732, 931, 1141, 1222, 1311
Hin6I	GCGC	1 cut(s)	1168
HinP1I	GCGC	1 cut(s)	1168
HincII	GTYRAC	1 cut(s)	200
HindII	GTYRAC	1 cut(s)	200
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	3 cut(s)	421, 980, 1119
HpaII	CCGG	2 cut(s)	580, 810
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	200, 880
Hpy188I	TCNGA	1 cut(s)	1248
Hpy188III	TCNNGA	4 cut(s)	58, 272, 403, 1085
Hpy8I	GTNNAC	2 cut(s)	200, 880
Hpy99I	CGWCG	1 cut(s)	1248
HpyAV	CCTTC	2 cut(s)	400, 1156
HpyCH4III	ACNGT	2 cut(s)	1176, 1261
HpyCH4IV	ACGT	1 cut(s)	942
HpyCH4V	TGCA	8 cut(s)	341, 347, 482, 728, 800, 880, 977, 1040
HpyF10VI	GCNNNNNNNGC	2 cut(s)	806, 974
HpyF3I	CTNAG	4 cut(s)	30, 631, 867, 1066
HpySE526I	ACGT	1 cut(s)	942
Hsp92II	CATG	6 cut(s)	254, 732, 931, 1141, 1222, 1311
HspAI	GCGC	1 cut(s)	1168
Kzo9I	GATC	4 cut(s)	331, 439, 595, 1107
LguI	GCTCTTC	3 cut(s)	691, 753, 1052
LmnI	GCTCC	4 cut(s)	294, 590, 1130, 1245
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	4 cut(s)	715, 901, 906, 1198
MaeI	CTAG	2 cut(s)	690, 1085
MaeII	ACGT	1 cut(s)	942
MaeIII	GTNAC	4 cut(s)	82, 395, 557, 692
MalI	GATC	4 cut(s)	333, 441, 597, 1109
MboI	GATC	4 cut(s)	331, 439, 595, 1107
MflI	RGATCY	2 cut(s)	439, 1107
MhlI	GDGCHC	4 cut(s)	686, 765, 882, 1274
MluCI	AATT	4 cut(s)	379, 659, 816, 1011
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	4 cut(s)	467, 487, 1152, 1226
Mph1103I	ATGCAT	1 cut(s)	730
MroXI	GAANNNNTTC	2 cut(s)	840, 1061
MseI	TTAA	8 cut(s)	300, 663, 819, 894, 945, 1101, 1113, 1215
MslI	CAYNNNNRTG	3 cut(s)	603, 723, 1223
MspCI	CTTAAG	1 cut(s)	1100
MspI	CCGG	2 cut(s)	580, 810
Mva1269I	GAATGC	1 cut(s)	800
MwoI	GCNNNNNNNGC	2 cut(s)	806, 974
NdeII	GATC	4 cut(s)	331, 439, 595, 1107
NlaIII	CATG	6 cut(s)	254, 732, 931, 1141, 1222, 1311
NlaIV	GGNNCC	4 cut(s)	225, 578, 1187, 1241
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	557
NsbI	TGCGCA	1 cut(s)	1169
NsiI	ATGCAT	1 cut(s)	730
NspI	RCATGY	2 cut(s)	732, 931
NspV	TTCGAA	1 cut(s)	366
PciSI	GCTCTTC	3 cut(s)	691, 753, 1052
PctI	GAATGC	1 cut(s)	800
PdmI	GAANNNNTTC	2 cut(s)	840, 1061
PfeI	GAWTC	2 cut(s)	980, 1119
PkrI	GCNGC	2 cut(s)	36, 492
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
PpuMI	RGGWCCY	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	409
PspN4I	GGNNCC	4 cut(s)	225, 578, 1187, 1241
PspPI	GGNCC	4 cut(s)	76, 223, 409, 747
PspPPI	RGGWCCY	1 cut(s)	409
PsuI	RGATCY	2 cut(s)	439, 1107
RsaI	GTAC	4 cut(s)	566, 710, 831, 1229
RsaNI	GTAC	4 cut(s)	565, 709, 830, 1228
RseI	CAYNNNNRTG	3 cut(s)	603, 723, 1223
SapI	GCTCTTC	3 cut(s)	691, 753, 1052
SaqAI	TTAA	8 cut(s)	300, 663, 819, 894, 945, 1101, 1113, 1215
SatI	GCNGC	2 cut(s)	35, 491
Sau3AI	GATC	4 cut(s)	331, 439, 595, 1107
Sau96I	GGNCC	4 cut(s)	76, 223, 409, 747
SchI	GAGTC	1 cut(s)	430
SduI	GDGCHC	4 cut(s)	686, 765, 882, 1274
SfaNI	GCATC	4 cut(s)	715, 901, 906, 1198
SfuI	TTCGAA	1 cut(s)	366
SinI	GGWCC	1 cut(s)	409
SmiMI	CAYNNNNRTG	3 cut(s)	603, 723, 1223
SmlI	CTYRAG	2 cut(s)	1100, 1267
SmoI	CTYRAG	2 cut(s)	1100, 1267
Sse9I	AATT	4 cut(s)	379, 659, 816, 1011
SsiI	CCGC	2 cut(s)	374, 490
SspI	AATATT	2 cut(s)	553, 572
SspMI	CTAG	2 cut(s)	690, 1085
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	1176, 1261
TaiI	ACGT	1 cut(s)	945
TaqI	TCGA	1 cut(s)	366
TasI	AATT	4 cut(s)	379, 659, 816, 1011
TauI	GCSGC	1 cut(s)	493
TfiI	GAWTC	2 cut(s)	980, 1119
Tru1I	TTAA	8 cut(s)	300, 663, 819, 894, 945, 1101, 1113, 1215
Tru9I	TTAA	8 cut(s)	300, 663, 819, 894, 945, 1101, 1113, 1215
TscAI	CASTG	3 cut(s)	15, 394, 1011
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	3 cut(s)	302, 418, 972
TspGWI	ACGGA	1 cut(s)	1232
TspRI	CASTG	3 cut(s)	15, 394, 1011
Vha464I	CTTAAG	1 cut(s)	1100
VneI	GTGCAC	1 cut(s)	878
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	1 cut(s)	659
XbaI	TCTAGA	1 cut(s)	1084
XceI	RCATGY	2 cut(s)	732, 931
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XmnI	GAANNNNTTC	2 cut(s)	840, 1061
XspI	CTAG	2 cut(s)	690, 1085
Zsp2I	ATGCAT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.