Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006325.1

Orthogroup ID

OG0008343

Physical Location & Seq

Genomic Coordinates Forward (+)

145134 .. 157221

Gene Structure 12088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006325.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3141 bp

atggtaagtgcccccttcctctttaatggtaaaagtcattatgatgcacagagccgattcaaagaagtcggaggctcaaggcgaactaaattagagcaagtgcaccggttgcactttgactgggcaaagggagggaatgatgatgtggtgaccggccacaagcaaaattgcttgactgacgccacagagcggccggacgatttgctccgcctgggggcagcttctgggcggtttgacgccacagagaggcaggacgaggggctgccagctcggcccaaggattcacgtgggcgacgtcatcaccagaccctccactgcgacgcgctgaaggcagcgactggctcacgaacgcatgactcgtggcgccgcaaaggcagctcgactgactccacagagcggccggacgatttgctctgcctgggttgcttcgatctcggcttgggggcagcttctgggcggtttgacgccacagagaggcaggacgagctttctgctttcctttcctgtccaccacaaaaattacacaaactgccactctccaactccaccacccatatggcggcttctctccacacccaccactaccatcttcatctccgccgctctaccccctccaagctccacacccatcaagcccccatattctcacggcgtttcccgaccggaaaacaaagggctcttactcgtagacagaacaaccgcaagggtggtagaggtggaacaactgacagctcgttctgctgggtgtgcagagctggtttggagattgataaggtctcgcctgatgatgaaggaagtgaaaggcctccttttgatatcaatttggccgtcattctcgccggtttcgctttcgaggcctattctagcccacctgctaatgttggaaggcgtgaaattgatgctgcagattgtaagacagtgtacctttcagagtcatttgtgcgtgagatatacgatggccaactatctgtgaaattgaaaaaaggcgtcaatcttcctgccatggatccatggggaacaagtgatccatatgtgatcatgcaattagatggtcaagttaataaaagcaagattaaatgggggacaaaagaaccaacttggaacgaagacttcaattttaatatcaagcagcctccaaccaaaaatcttcaggttgctgcttgggatgcaaaccttgtaactccacataagcgcatggggaatgcaggcatcaatctagaatgcctttgtgatgggaatttgcatgaaatactggtggaattggaaggaatgggaggtggtgggaaattacttatagaggtcagatatgaaacttttgaagaaattgatgaggggaaaaagtggtggatgagggtccccattgtttctgaatttctccgtaataagggttttgaacctgctctgaaaaagtttgttggctctgacactgtgcaagcacgtcagtttgcagaatatgcttttgggcagttaaagtcattcaataataatgcttacctttggaagaatctgatttcaagtaatgatgaaagtgataggaagggccctgggaaacctaataattctgctgttgtgtcaggcgtgccttcccagatggagggtatcgcagagggttctttagataatgcagactgcaatgaagtgagcaatttagacgagtctaacagagataatggtgatgtggagaatggaaatgcctctcagccagtgaaaaaactcgatgatgaaatgcagtcagataagaacttttggaagaactttgctaatgagatcaatcaaaatgttgtagagaaatttggattgccagtgccaggaaaattaaagtgggatgggtttgatttattagacagagttggtttgcagtcacaaaagatagcagaagcaacttatgttgaatcagggcttgcaactccagaagtcttagatgttgataacgataaaacaacagccccacttcccattagcattatgcagtcttcatttccagatataaaggaagcaacaagggaactattaaagcaaactgattctgttttaggaatattaatggttctaactgcaacagtatctcaagcaaagaaggaagaaaatattgtaggagggagtgcaactaaggaagaggatgatgtcgtaactgagaagcttgctaactcacagggagccgaggagatgaaagcactgttcttaactgcagaaactgccatggaggcttgggcgatgctcgctacttctttaggacatccaagttttataaagtctgaatttgagaaactatgtttcttagataatgagacaacagacacacaggttgcaatttggcgtgattctgcacggaaaagattagtgatcgctttcaggggaacagagcaggcaagatggaaggacttgcgaacggatttgatgctagctcctgctgggctgaatccagaaaggataggaggaaactttaagcaagaaattcaagttcatagtggcttcttaggtgcatatgattctgtcagaataaggatcatctctctaattaaattagcaatcggttatattgatgatcttgctgagccggtgcacaaatggcatgtttatgtaactggtcatagtcttggtggtgcattggctactctcctagctctcgaacttgcatcaagtcaattagcaaagcatggagtgatcactataagcatgtataatttcggatctcctagggttgggaacaaaagatttgctgatgtttataatgagaaagtcaaagatagttggagagttgtaaatcacagagacattataccaactgtgccccgcttgatgggttactgccatgtagctcaacctgtttatctagcaacaggagacctagcgaatgccttggaaaatatggagctctctggagatggttaccaagctgatatgatcggggagtccacaccggatgttctcgtcagtgaattcatgaagggtgagaaggaacttatacagaaaattttacagactgaaataaatatattccgttcaatcagagatggaactgcacttatgcaacatatggaagatttttactacatcacgttgcttgagaatgtgagatcaaattaccaacctgttgccaagtcgttatccgacgaacaatccaacaaaacaatcagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Lipase_3

Protein Analysis

1046

Amino Acids

116.38

Weight (kDa)

5.93

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13550 AT4G13550 AT4G13550
fragaria_vesca	FvH4_4g05250 FvH4_4g05250
malus_domestica	MD13G1226600.v1.1
prunus_persica	Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1
pyrus_communis	pycom13g19960
rosa_chinensis	RchiOBHm_Chr4g0396161
rosa_laevigata	RLG00000009564
rosa_multiflora	Rmu_sc0006325.1_g000041
rosa_roxburghii	Rroxscaffold_5G00341010
rosa_rugosa	Rorug03G0351200 Rorug03G0351300 Rorug03G0351300
rosa_samantha	Rh4BG065200 Rh4CG072000 Rh4DG062000
rosa_wichuraiana	Rw4G005390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2249, 2730
AarI	CACCTGC	1 cut(s)	880
AatII	GACGTC	1 cut(s)	298
Acc36I	ACCTGC	2 cut(s)	880, 1405
AccB1I	GGYRCC	1 cut(s)	363
AccBSI	CCGCTC	3 cut(s)	190, 397, 603
AccI	GTMKAC	1 cut(s)	688
AccII	CGCG	1 cut(s)	323
AclWI	GGATC	5 cut(s)	1001, 1014, 1019, 2513, 2698
AcoI	YGGCCR	5 cut(s)	154, 191, 398, 825, 958
AcsI	RAATTY	7 cut(s)	1237, 1370, 1790, 2258, 2454, 2939, 2973
AcuI	CTGAAG	2 cut(s)	347, 1133
AcvI	CACGTG	1 cut(s)	287
AcyI	GRCGYC	6 cut(s)	180, 237, 295, 364, 465, 987
AfaI	GTAC	1 cut(s)	923
AgeI	ACCGGT	1 cut(s)	105
AjiI	CACGTC	1 cut(s)	1439
AjnI	CCWGG	4 cut(s)	210, 417, 1543, 1807
AjuI	GAANNNNNNNTTGG	2 cut(s)	1443, 1475
AloI	GAACNNNNNNTCC	2 cut(s)	1009, 1041
Alw21I	GWGCWC	3 cut(s)	105, 2565, 2877
Alw26I	GTCTC	4 cut(s)	781, 2282, 2766, 2838
Alw44I	GTGCAC	2 cut(s)	101, 2561
AlwI	GGATC	5 cut(s)	1001, 1014, 1019, 2513, 2698
AlwNI	CAGNNNCTG	4 cut(s)	224, 338, 452, 2195
AoxI	GGCC	9 cut(s)	154, 191, 272, 398, 803, 825, 855, 958, 1540
ApaI	GGGCCC	1 cut(s)	1544
ApaLI	GTGCAC	2 cut(s)	101, 2561
ApeKI	GCWGC	8 cut(s)	218, 262, 332, 375, 446, 902, 1129, 1157
ApoI	RAATTY	7 cut(s)	1237, 1370, 1790, 2258, 2454, 2939, 2973
AseI	ATTAAT	1 cut(s)	2042
AsiGI	ACCGGT	1 cut(s)	105
AspA2I	CCTAGG	1 cut(s)	2696
AspLEI	GCGC	3 cut(s)	325, 366, 1194
AspS9I	GGNCC	4 cut(s)	273, 1354, 1540, 1541
AsuHPI	GGTGA	4 cut(s)	160, 293, 1685, 2963
AsuNHI	GCTAGC	1 cut(s)	2401
AvaII	GGWCC	1 cut(s)	1354
AvrII	CCTAGG	1 cut(s)	2696
BaeGI	GKGCMC	5 cut(s)	13, 105, 1544, 2565, 2793
BalI	TGGCCA	1 cut(s)	960
BamHI	GGATCC	1 cut(s)	1006
BanI	GGYRCC	1 cut(s)	363
BanII	GRGCYC	3 cut(s)	679, 1544, 2877
BauI	CACGAG	1 cut(s)	358
BbrPI	CACGTG	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	1113, 1965
Bbv12I	GWGCWC	3 cut(s)	105, 2565, 2877
BbvI	GCAGC	8 cut(s)	230, 249, 344, 387, 458, 889, 1141, 1144
BceAI	ACGGC	2 cut(s)	665, 812
BcgI	CGANNNNNNTGC	2 cut(s)	473, 507
BciT130I	CCWGG	4 cut(s)	212, 419, 1545, 1809
BclI	TGATCA	2 cut(s)	1035, 2664
BcoDI	GTCTC	4 cut(s)	781, 2282, 2766, 2838
BfaI	CTAG	7 cut(s)	864, 1217, 2402, 2621, 2697, 2834, 2849
BfmI	CTRYAG	2 cut(s)	903, 2187
BfoI	RGCGCY	1 cut(s)	367
BfuAI	ACCTGC	2 cut(s)	880, 1405
BglI	GCCNNNNNGGC	3 cut(s)	271, 372, 2204
BlnI	CCTAGG	1 cut(s)	2696
BlpI	GCTNAGC	1 cut(s)	2553
Bme1390I	CCNGG	4 cut(s)	212, 419, 1545, 1809
Bme18I	GGWCC	1 cut(s)	1354
BmgBI	CACGTC	1 cut(s)	1439
BmgT120I	GGNCC	4 cut(s)	273, 1354, 1540, 1541
BmiI	GGNNCC	6 cut(s)	365, 1008, 1355, 1356, 1542, 2158
BmrFI	CCNGG	4 cut(s)	212, 419, 1545, 1809
BmrI	ACTGGG	1 cut(s)	130
BmsI	GCATC	7 cut(s)	34, 889, 1156, 1218, 2205, 2388, 2645
BmtI	GCTAGC	1 cut(s)	2405
BmuI	ACTGGG	1 cut(s)	130
BpiI	GAAGAC	2 cut(s)	1113, 1965
BpmI	CTGGAG	2 cut(s)	1893, 2901
Bpu1102I	GCTNAGC	1 cut(s)	2553
BpuEI	CTTGAG	3 cut(s)	61, 2052, 3086
BsaAI	YACGTR	1 cut(s)	287
BsaHI	GRCGYC	6 cut(s)	180, 237, 295, 364, 465, 987
BsaI	GGTCTC	2 cut(s)	781, 2838
BsaWI	WCCGGW	3 cut(s)	105, 662, 2920
Bse118I	RCCGGY	4 cut(s)	105, 152, 839, 2557
Bse1I	ACTGG	6 cut(s)	125, 343, 1257, 1703, 1802, 2590
Bse3DI	GCAATG	1 cut(s)	1639
BseBI	CCWGG	4 cut(s)	212, 419, 1545, 1809
BseGI	GGATG	6 cut(s)	1171, 1353, 1831, 2125, 2236, 2929
BseMI	GCAATG	1 cut(s)	1639
BseMII	CTCAG	3 cut(s)	1712, 2124, 2544
BseNI	ACTGG	6 cut(s)	125, 343, 1257, 1703, 1802, 2590
BseRI	GAGGAG	1 cut(s)	2177
BseSI	GKGCMC	5 cut(s)	13, 105, 1544, 2565, 2793
BseX3I	CGGCCG	2 cut(s)	191, 398
BseXI	GCAGC	8 cut(s)	230, 249, 344, 387, 458, 889, 1141, 1144
BseYI	CCCAGC	2 cut(s)	741, 2411
BsgI	GTGCAG	3 cut(s)	769, 2310, 3006
Bsh1236I	CGCG	1 cut(s)	323
Bsh1285I	CGRYCG	3 cut(s)	194, 401, 663
BshFI	GGCC	9 cut(s)	156, 193, 274, 400, 805, 827, 857, 960, 1542
BshNI	GGYRCC	1 cut(s)	363
BshTI	ACCGGT	1 cut(s)	105
BsiEI	CGRYCG	3 cut(s)	194, 401, 663
BsiHKAI	GWGCWC	3 cut(s)	105, 2565, 2877
BsiSI	CCGG	8 cut(s)	106, 153, 194, 401, 663, 840, 2558, 2921
BslFI	GGGAC	2 cut(s)	1096, 1340
BsmAI	GTCTC	4 cut(s)	781, 2282, 2766, 2838
BsmFI	GGGAC	2 cut(s)	1096, 1340
BsmI	GAATGC	3 cut(s)	1207, 1226, 2860
BsnI	GGCC	9 cut(s)	156, 193, 274, 400, 805, 827, 857, 960, 1542
Bso31I	GGTCTC	2 cut(s)	781, 2838
Bsp120I	GGGCCC	1 cut(s)	1540
Bsp1286I	GDGCHC	7 cut(s)	13, 105, 679, 1544, 2565, 2793, 2877
Bsp1720I	GCTNAGC	1 cut(s)	2553
Bsp19I	CCATGG	3 cut(s)	1002, 1010, 2199
BspANI	GGCC	9 cut(s)	156, 193, 274, 400, 805, 827, 857, 960, 1542
BspCNI	CTCAG	3 cut(s)	1711, 2125, 2545
BspFNI	CGCG	1 cut(s)	323
BspHI	TCATGA	1 cut(s)	2943
BspLI	GGNNCC	6 cut(s)	365, 1008, 1355, 1356, 1542, 2158
BspMAI	CTGCAG	2 cut(s)	907, 2191
BspMI	ACCTGC	2 cut(s)	880, 1405
BspOI	GCTAGC	1 cut(s)	2405
BspPI	GGATC	5 cut(s)	1001, 1014, 1019, 2513, 2698
BspT107I	GGYRCC	1 cut(s)	363
BspTNI	GGTCTC	2 cut(s)	781, 2838
BsrBI	CCGCTC	3 cut(s)	190, 397, 603
BsrDI	GCAATG	1 cut(s)	1639
BsrFI	RCCGGY	4 cut(s)	105, 152, 839, 2557
BsrI	ACTGG	6 cut(s)	125, 343, 1257, 1703, 1802, 2590
BssAI	RCCGGY	4 cut(s)	105, 152, 839, 2557
BssNI	GRCGYC	6 cut(s)	180, 237, 295, 364, 465, 987
BssSI	CACGAG	1 cut(s)	358
BssT1I	CCWWGG	6 cut(s)	276, 1002, 1010, 2199, 2696, 2859
Bst2BI	CACGAG	1 cut(s)	358
Bst2UI	CCWGG	4 cut(s)	212, 419, 1545, 1809
Bst4CI	ACNGT	5 cut(s)	919, 1429, 2062, 2178, 2788
Bst6I	CTCTTC	1 cut(s)	2109
BstACI	GRCGYC	6 cut(s)	180, 237, 295, 364, 465, 987
BstAPI	GCANNNNNTGC	3 cut(s)	109, 1454, 2195
BstBAI	YACGTR	1 cut(s)	287
BstC8I	GCNNGC	9 cut(s)	267, 1207, 1434, 1580, 1902, 2142, 2220, 2367, 2403
BstDEI	CTNAG	7 cut(s)	1698, 1918, 2109, 2133, 2278, 2476, 2553
BstDSI	CCRYGG	3 cut(s)	1002, 1010, 2199
BstEII	GGTNACC	2 cut(s)	148, 2888
BstF5I	GGATG	6 cut(s)	1171, 1353, 1831, 2125, 2236, 2929
BstFNI	CGCG	1 cut(s)	323
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	3 cut(s)	325, 366, 1194
BstMAI	GTCTC	4 cut(s)	781, 2282, 2766, 2838
BstMCI	CGRYCG	3 cut(s)	194, 401, 663
BstNI	CCWGG	4 cut(s)	212, 419, 1545, 1809
BstNSI	RCATGY	2 cut(s)	2576, 2680
BstPI	GGTNACC	2 cut(s)	148, 2888
BstSCI	CCNGG	4 cut(s)	210, 417, 1543, 1807
BstSFI	CTRYAG	2 cut(s)	903, 2187
BstSLI	GKGCMC	5 cut(s)	13, 105, 1544, 2565, 2793
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	8 cut(s)	230, 249, 344, 387, 458, 889, 1141, 1144
BstV2I	GAAGAC	2 cut(s)	1113, 1965
BstX2I	RGATCY	2 cut(s)	1006, 2690
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstYI	RGATCY	2 cut(s)	1006, 2690
BstZI	CGGCCG	2 cut(s)	191, 398
BsuRI	GGCC	9 cut(s)	156, 193, 274, 400, 805, 827, 857, 960, 1542
BtgI	CCRYGG	3 cut(s)	1002, 1010, 2199
BtgZI	GCGATG	1 cut(s)	2228
BtrI	CACGTC	1 cut(s)	1439
BtsCI	GGATG	6 cut(s)	1171, 1353, 1831, 2125, 2236, 2929
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	7 cut(s)	313, 924, 1425, 1710, 1809, 2174, 2941
BveI	ACCTGC	2 cut(s)	880, 1405
Cac8I	GCNNGC	9 cut(s)	267, 1207, 1434, 1580, 1902, 2142, 2220, 2367, 2403
CaiI	CAGNNNCTG	4 cut(s)	224, 338, 452, 2195
CciI	TCATGA	1 cut(s)	2943
CfoI	GCGC	3 cut(s)	325, 366, 1194
Cfr10I	RCCGGY	4 cut(s)	105, 152, 839, 2557
Cfr13I	GGNCC	4 cut(s)	273, 1354, 1540, 1541
CseI	GACGC	5 cut(s)	188, 245, 329, 473, 976
Csp6I	GTAC	1 cut(s)	922
CspAI	ACCGGT	1 cut(s)	105
CviQI	GTAC	1 cut(s)	922
DdeI	CTNAG	7 cut(s)	1698, 1918, 2109, 2133, 2278, 2476, 2553
DinI	GGCGCC	1 cut(s)	365
EaeI	YGGCCR	5 cut(s)	154, 191, 398, 825, 958
EagI	CGGCCG	2 cut(s)	191, 398
Eam1104I	CTCTTC	1 cut(s)	2109
EarI	CTCTTC	1 cut(s)	2109
EciI	GGCGGA	2 cut(s)	197, 587
Ecl136II	GAGCTC	1 cut(s)	2875
EclXI	CGGCCG	2 cut(s)	191, 398
Eco130I	CCWWGG	6 cut(s)	276, 1002, 1010, 2199, 2696, 2859
Eco147I	AGGCCT	2 cut(s)	805, 857
Eco24I	GRGCYC	3 cut(s)	679, 1544, 2877
Eco31I	GGTCTC	2 cut(s)	781, 2838
Eco32I	GATATC	1 cut(s)	817
Eco47I	GGWCC	1 cut(s)	1354
Eco52I	CGGCCG	2 cut(s)	191, 398
Eco53kI	GAGCTC	1 cut(s)	2875
Eco57I	CTGAAG	2 cut(s)	347, 1133
Eco72I	CACGTG	1 cut(s)	287
Eco91I	GGTNACC	2 cut(s)	148, 2888
EcoICRI	GAGCTC	1 cut(s)	2875
EcoO109I	RGGNCCY	3 cut(s)	1354, 1540, 1541
EcoO65I	GGTNACC	2 cut(s)	148, 2888
EcoRI	GAATTC	1 cut(s)	2939
EcoRII	CCWGG	4 cut(s)	210, 417, 1543, 1807
EcoRV	GATATC	1 cut(s)	817
EcoT14I	CCWWGG	6 cut(s)	276, 1002, 1010, 2199, 2696, 2859
EcoT38I	GRGCYC	3 cut(s)	679, 1544, 2877
EgeI	GGCGCC	1 cut(s)	365
EheI	GGCGCC	1 cut(s)	365
ErhI	CCWWGG	6 cut(s)	276, 1002, 1010, 2199, 2696, 2859
FalI	AAGNNNNNCTT	2 cut(s)	793, 825
FaqI	GGGAC	2 cut(s)	1096, 1340
FauI	CCCGC	1 cut(s)	2801
FauNDI	CATATG	4 cut(s)	555, 1030, 2485, 3036
FbaI	TGATCA	2 cut(s)	1035, 2664
FblI	GTMKAC	1 cut(s)	688
FokI	GGATG	6 cut(s)	1178, 1360, 1838, 2132, 2223, 2936
FriOI	GRGCYC	3 cut(s)	679, 1544, 2877
FspBI	CTAG	7 cut(s)	864, 1217, 2402, 2621, 2697, 2834, 2849
GlaI	GCGC	3 cut(s)	324, 365, 1193
GsaI	CCCAGC	2 cut(s)	745, 2415
GsuI	CTGGAG	2 cut(s)	1893, 2901
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	9 cut(s)	156, 193, 274, 400, 805, 827, 857, 960, 1542
HapII	CCGG	8 cut(s)	106, 153, 194, 401, 663, 840, 2558, 2921
HgaI	GACGC	5 cut(s)	188, 245, 329, 473, 976
HhaI	GCGC	3 cut(s)	325, 366, 1194
Hin1I	GRCGYC	6 cut(s)	180, 237, 295, 364, 465, 987
Hin6I	GCGC	3 cut(s)	323, 364, 1192
HinP1I	GCGC	3 cut(s)	323, 364, 1192
HindIII	AAGCTT	1 cut(s)	2138
HpaII	CCGG	8 cut(s)	106, 153, 194, 401, 663, 840, 2558, 2921
HphI	GGTGA	4 cut(s)	160, 293, 1685, 2963
Hpy166II	GTNNAC	6 cut(s)	103, 509, 689, 922, 2563, 2916
Hpy188III	TCNNGA	9 cut(s)	345, 658, 1217, 1910, 1982, 2423, 2627, 2880, 2944
Hpy8I	GTNNAC	6 cut(s)	103, 509, 689, 922, 2563, 2916
Hpy99I	CGWCG	3 cut(s)	297, 323, 3116
HpyCH4III	ACNGT	5 cut(s)	919, 1429, 2062, 2178, 2788
HpyCH4IV	ACGT	4 cut(s)	286, 295, 1438, 3059
HpyF3I	CTNAG	7 cut(s)	1698, 1918, 2109, 2133, 2278, 2476, 2553
HpySE526I	ACGT	4 cut(s)	286, 295, 1438, 3059
Hsp92I	GRCGYC	6 cut(s)	180, 237, 295, 364, 465, 987
HspAI	GCGC	3 cut(s)	323, 364, 1192
KasI	GGCGCC	1 cut(s)	363
KflI	GGGWCCC	1 cut(s)	1354
Ksp22I	TGATCA	2 cut(s)	1035, 2664
LmnI	GCTCC	5 cut(s)	210, 624, 2156, 2410, 2872
Lsp1109I	GCAGC	8 cut(s)	230, 249, 344, 387, 458, 889, 1141, 1144
LweI	GCATC	7 cut(s)	34, 889, 1156, 1218, 2205, 2388, 2645
MaeI	CTAG	7 cut(s)	864, 1217, 2402, 2621, 2697, 2834, 2849
MaeII	ACGT	4 cut(s)	286, 295, 1438, 3059
MaeIII	GTNAC	7 cut(s)	148, 1177, 1860, 2128, 2581, 2804, 2888
MbiI	CCGCTC	3 cut(s)	190, 397, 603
MflI	RGATCY	2 cut(s)	1006, 2690
MhlI	GDGCHC	7 cut(s)	13, 105, 679, 1544, 2565, 2793, 2877
MlsI	TGGCCA	1 cut(s)	960
MluNI	TGGCCA	1 cut(s)	960
Mly113I	GGCGCC	1 cut(s)	364
MlyI	GAGTC	5 cut(s)	350, 380, 941, 1664, 2921
MmeI	TCCRAC	6 cut(s)	49, 564, 862, 1160, 2732, 3135
Mox20I	TGGCCA	1 cut(s)	960
MscI	TGGCCA	1 cut(s)	960
MslI	CAYNNNNRTG	3 cut(s)	42, 554, 2577
Msp20I	TGGCCA	1 cut(s)	960
MspA1I	CMGCKG	1 cut(s)	3138
MspI	CCGG	8 cut(s)	106, 153, 194, 401, 663, 840, 2558, 2921
MspR9I	CCNGG	4 cut(s)	212, 419, 1545, 1809
Mva1269I	GAATGC	3 cut(s)	1207, 1226, 2860
MvaI	CCWGG	4 cut(s)	212, 419, 1545, 1809
MvnI	CGCG	1 cut(s)	323
NarI	GGCGCC	1 cut(s)	364
NcoI	CCATGG	3 cut(s)	1002, 1010, 2199
NdeI	CATATG	4 cut(s)	555, 1030, 2485, 3036
NheI	GCTAGC	1 cut(s)	2401
NlaIV	GGNNCC	6 cut(s)	365, 1008, 1355, 1356, 1542, 2158
NmeAIII	GCCGAG	3 cut(s)	250, 414, 2185
NmuCI	GTSAC	2 cut(s)	148, 1860
NspI	RCATGY	2 cut(s)	2576, 2680
PagI	TCATGA	1 cut(s)	2943
PaqCI	CACCTGC	1 cut(s)	880
PasI	CCCWGGG	1 cut(s)	1544
PceI	AGGCCT	2 cut(s)	805, 857
PcsI	WCGNNNNNNNCGW	2 cut(s)	292, 356
PctI	GAATGC	3 cut(s)	1207, 1226, 2860
PfeI	GAWTC	8 cut(s)	57, 281, 1504, 1892, 2024, 2321, 2419, 2489
PinAI	ACCGGT	1 cut(s)	105
PleI	GAGTC	5 cut(s)	350, 380, 940, 1663, 2920
PluTI	GGCGCC	1 cut(s)	367
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
PpsI	GAGTC	5 cut(s)	350, 380, 940, 1663, 2920
Ppu21I	YACGTR	1 cut(s)	287
PpuMI	RGGWCCY	1 cut(s)	1354
PshBI	ATTAAT	1 cut(s)	2042
PsiI	TTATAA	2 cut(s)	2249, 2730
Psp124BI	GAGCTC	1 cut(s)	2877
Psp5II	RGGWCCY	1 cut(s)	1354
Psp6I	CCWGG	4 cut(s)	210, 417, 1543, 1807
PspCI	CACGTG	1 cut(s)	287
PspEI	GGTNACC	2 cut(s)	148, 2888
PspFI	CCCAGC	2 cut(s)	741, 2411
PspGI	CCWGG	4 cut(s)	210, 417, 1543, 1807
PspN4I	GGNNCC	6 cut(s)	365, 1008, 1355, 1356, 1542, 2158
PspOMI	GGGCCC	1 cut(s)	1540
PspPI	GGNCC	4 cut(s)	273, 1354, 1540, 1541
PspPPI	RGGWCCY	1 cut(s)	1354
PstI	CTGCAG	2 cut(s)	907, 2191
PstNI	CAGNNNCTG	4 cut(s)	224, 338, 452, 2195
PsuI	RGATCY	2 cut(s)	1006, 2690
PvuII	CAGCTG	1 cut(s)	3138
RsaI	GTAC	1 cut(s)	923
RsaNI	GTAC	1 cut(s)	922
RseI	CAYNNNNRTG	3 cut(s)	42, 554, 2577
SacI	GAGCTC	1 cut(s)	2877
Sau96I	GGNCC	4 cut(s)	273, 1354, 1540, 1541
SchI	GAGTC	5 cut(s)	350, 380, 941, 1664, 2921
ScrFI	CCNGG	4 cut(s)	212, 419, 1545, 1809
SduI	GDGCHC	7 cut(s)	13, 105, 679, 1544, 2565, 2793, 2877
SfaNI	GCATC	7 cut(s)	34, 889, 1156, 1218, 2205, 2388, 2645
SfcI	CTRYAG	2 cut(s)	903, 2187
SfoI	GGCGCC	1 cut(s)	365
SinI	GGWCC	1 cut(s)	1354
SmiMI	CAYNNNNRTG	3 cut(s)	42, 554, 2577
SmlI	CTYRAG	3 cut(s)	76, 2067, 3065
SmoI	CTYRAG	3 cut(s)	76, 2067, 3065
SseBI	AGGCCT	2 cut(s)	805, 857
SspDI	GGCGCC	1 cut(s)	363
SspI	AATATT	2 cut(s)	2040, 2089
SspMI	CTAG	7 cut(s)	864, 1217, 2402, 2621, 2697, 2834, 2849
SstI	GAGCTC	1 cut(s)	2877
StuI	AGGCCT	2 cut(s)	805, 857
StyD4I	CCNGG	4 cut(s)	210, 417, 1543, 1807
StyI	CCWWGG	6 cut(s)	276, 1002, 1010, 2199, 2696, 2859
TaaI	ACNGT	5 cut(s)	919, 1429, 2062, 2178, 2788
TaiI	ACGT	4 cut(s)	289, 298, 1441, 3062
TaqI	TCGA	5 cut(s)	380, 429, 852, 1716, 2628
TauI	GCSGC	5 cut(s)	193, 369, 400, 563, 603
TfiI	GAWTC	8 cut(s)	57, 281, 1504, 1892, 2024, 2321, 2419, 2489
TscAI	CASTG	7 cut(s)	320, 924, 1432, 1710, 1809, 2181, 2941
TseFI	GTSAC	2 cut(s)	148, 1860
TseI	GCWGC	8 cut(s)	218, 262, 332, 375, 446, 902, 1129, 1157
Tsp45I	GTSAC	2 cut(s)	148, 1860
TspGWI	ACGGA	4 cut(s)	1367, 2344, 2405, 2990
TspRI	CASTG	7 cut(s)	320, 924, 1432, 1710, 1809, 2181, 2941
VneI	GTGCAC	2 cut(s)	101, 2561
VpaK11BI	GGWCC	1 cut(s)	1354
VspI	ATTAAT	1 cut(s)	2042
XapI	RAATTY	7 cut(s)	1237, 1370, 1790, 2258, 2454, 2939, 2973
XbaI	TCTAGA	1 cut(s)	1216
XceI	RCATGY	2 cut(s)	2576, 2680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	553
XmaJI	CCTAGG	1 cut(s)	2696
XmiI	GTMKAC	1 cut(s)	688
XspI	CTAG	7 cut(s)	864, 1217, 2402, 2621, 2697, 2834, 2849
ZraI	GACGTC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.