Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008343

Physical Location & Seq

Genomic Coordinates Forward (+)

10888653 .. 10899074

Gene Structure 10422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G005390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGCAGTCAGATAAGAACTTTTGGAAGAACTTTGCTAATGAGATCAATCAAAATGTTGTAGAGAAATTTGGATTGCCAGTGCCAGGAAAATTAAAGTGGGATGGGTTTGATTTATTAGACAGATTTGGTTTGCAGTCACAAAAGATAGCAGAAGCAACTTATGTTGAATCAGGGCTTGCAACTCCAGAAGTCTTAGATGTTGATAACGATAAAACAACAGCCCCACTTCCCATTAGCATTATGCAGTCTTCATTTCCAGATATAAAGGAAGCAACAAGGGAACTATTAAAGCAAACTGATTCTGTTTTAGGAATATTAATGGTTCTAACTGCAACAGTATCTCAAGCAAAGAAGGAAGAAAATATTGTAGGAGGGAGTGCAACTAAGGAAGAGGATGATGTCGTAACTGAGAAGCTTGCTAACTCACAGGGAGCCGAGGAGATGAAAGCACTGTTCTTAACTGCAGAAACTGCCATGGAGGCTTGGGCGATGCTCGCTACTTCTTTAGGACATCCAAGTTTTATAAAGTCTGAATTTGAGAAACTATGTTTCTTAGATAATGAGACAACAGACACACAGGTTGCAATTTGGCGTGATTCTGCACGGAAAAGATTAGTGATCGCTTTCAGGGGAACAGAGCAGGCAAGATGGAAGGACTTGCGAACGGATTTGATGCTAGCTCCTGCTGGGCTGAATCCAGAAAGGATAGGAGGAAACTTTAAGCAAGAAATTCAAGTTCATAGTGGCTTCTTAGGTGCATATGATTCTGTCAGAATAAGGATCATCTCTCTAATTAAATTAGCAATCGGTTATATTGATGATCTTGCTGAGCCAGTGCACAGATGGCATGTTTATGTAACTGGTCATAGTCTTGGTGGTGCATTGGCTACTCTCCTAGCTCTCGAACTTGCATCAAGTCAATTAGCAAAGCATGGAGTGATCACTATAAGCATGTATAATTTCGGATCTCCTAGGGTTGGGAACAAAAGATTTGCTGATGTTTATAATGAGAAAGTCAAAGATAGTTGGAGAGTTGTAAATCACAGAGACATTATACCAACTGTGCCCCGCTTGATGGGTTACTGCCATGTAGCTCAACCTGTTTATCTAGCAACAGGAGACCTAGCGAATGCCTTGGAAAATATGGAGCTCTCTGGAGATGGTTACCAAGCTGATATGATCGGGGAGTCCACACCGGATGTTCTCGTCAGTGAATTCATGAAGGGTGAGAAGGAACTTATACAGAAAATTTTACAGACTGAAATAAATATATTCCGTTCAATCAGAGATGGAACTGCACTTATGCAACATATGGAAGATTTTTACTACATCACGTTGCTTGAGAATGTGAGATCAAATTACCAACCTGTTGCCAAGTCGTTATCCGACGAACAATCCAACAAAACAATCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Lipase_3

Protein Analysis

471

Amino Acids

52.52

Weight (kDa)

5.2

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	206 - 357	1e-28	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13550 AT4G13550 AT4G13550
fragaria_vesca	FvH4_4g05250 FvH4_4g05250
malus_domestica	MD13G1226600.v1.1
prunus_persica	Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1
pyrus_communis	pycom13g19960
rosa_chinensis	RchiOBHm_Chr4g0396161
rosa_laevigata	RLG00000009564
rosa_multiflora	Rmu_sc0006325.1_g000041
rosa_roxburghii	Rroxscaffold_5G00341010
rosa_rugosa	Rorug03G0351200 Rorug03G0351300 Rorug03G0351300
rosa_samantha	Rh4BG065200 Rh4CG072000 Rh4DG062000
rosa_wichuraiana	Rw4G005390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	524, 1005
AciI	CCGC	1 cut(s)	1069
AclWI	GGATC	2 cut(s)	788, 973
AcsI	RAATTY	5 cut(s)	65, 533, 729, 1214, 1248
AfiI	CCNNNNNNNGG	3 cut(s)	83, 977, 1075
AgsI	TTSAA	3 cut(s)	167, 734, 1281
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	7 cut(s)	415, 680, 899, 1094, 1150, 1172, 1413
AluI	AGCT	7 cut(s)	415, 680, 899, 1094, 1150, 1172, 1413
Alw21I	GWGCWC	2 cut(s)	840, 1152
Alw26I	GTCTC	3 cut(s)	557, 1041, 1113
Alw44I	GTGCAC	1 cut(s)	836
AlwI	GGATC	2 cut(s)	788, 973
AlwNI	CAGNNNCTG	1 cut(s)	470
ApaLI	GTGCAC	1 cut(s)	836
ApoI	RAATTY	5 cut(s)	65, 533, 729, 1214, 1248
AseI	ATTAAT	1 cut(s)	317
AspA2I	CCTAGG	1 cut(s)	971
AsuHPI	GGTGA	1 cut(s)	1238
AsuNHI	GCTAGC	1 cut(s)	676
AvrII	CCTAGG	1 cut(s)	971
BaeGI	GKGCMC	2 cut(s)	840, 1068
BanII	GRGCYC	1 cut(s)	1152
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	840, 1152
BccI	CCATC	6 cut(s)	95, 642, 837, 1069, 1154, 1283
BciT130I	CCWGG	1 cut(s)	84
BclI	TGATCA	1 cut(s)	939
BcoDI	GTCTC	3 cut(s)	557, 1041, 1113
BfaI	CTAG	5 cut(s)	677, 896, 972, 1109, 1124
BfmI	CTRYAG	1 cut(s)	462
BglI	GCCNNNNNGGC	1 cut(s)	479
BlnI	CCTAGG	1 cut(s)	971
BlpI	GCTNAGC	1 cut(s)	828
Bme1390I	CCNGG	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	3 cut(s)	480, 663, 920
BmtI	GCTAGC	1 cut(s)	680
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	2 cut(s)	168, 1176
Bpu1102I	GCTNAGC	1 cut(s)	828
BpuEI	CTTGAG	2 cut(s)	327, 1361
BsaI	GGTCTC	1 cut(s)	1113
BsaJI	CCNNGG	4 cut(s)	435, 474, 971, 1134
BsaWI	WCCGGW	1 cut(s)	1195
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 977, 1075
Bse1I	ACTGG	3 cut(s)	77, 833, 865
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	4 cut(s)	435, 474, 971, 1134
BseGI	GGATG	4 cut(s)	106, 400, 511, 1204
BseLI	CCNNNNNNNGG	3 cut(s)	83, 977, 1075
BseMII	CTCAG	2 cut(s)	399, 819
BseNI	ACTGG	3 cut(s)	77, 833, 865
BseRI	GAGGAG	1 cut(s)	452
BseSI	GKGCMC	2 cut(s)	840, 1068
BseYI	CCCAGC	1 cut(s)	686
BsgI	GTGCAG	2 cut(s)	585, 1281
BsiHKAI	GWGCWC	2 cut(s)	840, 1152
BsiSI	CCGG	1 cut(s)	1196
BslI	CCNNNNNNNGG	3 cut(s)	83, 977, 1075
BsmAI	GTCTC	3 cut(s)	557, 1041, 1113
BsmI	GAATGC	1 cut(s)	1135
Bso31I	GGTCTC	1 cut(s)	1113
Bsp1286I	GDGCHC	3 cut(s)	840, 1068, 1152
Bsp143I	GATC	8 cut(s)	42, 618, 780, 820, 939, 965, 1179, 1352
Bsp1720I	GCTNAGC	1 cut(s)	828
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	1 cut(s)	1069
BspCNI	CTCAG	2 cut(s)	400, 820
BspHI	TCATGA	1 cut(s)	1218
BspLI	GGNNCC	1 cut(s)	433
BspMAI	CTGCAG	1 cut(s)	466
BspOI	GCTAGC	1 cut(s)	680
BspPI	GGATC	2 cut(s)	788, 973
BspTNI	GGTCTC	1 cut(s)	1113
BsrI	ACTGG	3 cut(s)	77, 833, 865
BssECI	CCNNGG	4 cut(s)	435, 474, 971, 1134
BssMI	GATC	8 cut(s)	42, 618, 780, 820, 939, 965, 1179, 1352
BssT1I	CCWWGG	3 cut(s)	474, 971, 1134
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	3 cut(s)	337, 453, 1063
Bst6I	CTCTTC	1 cut(s)	384
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	5 cut(s)	177, 417, 495, 642, 678
BstDEI	CTNAG	6 cut(s)	193, 384, 408, 553, 751, 828
BstDSI	CCRYGG	1 cut(s)	474
BstEII	GGTNACC	1 cut(s)	1163
BstF5I	GGATG	4 cut(s)	106, 400, 511, 1204
BstKTI	GATC	8 cut(s)	45, 621, 783, 823, 942, 968, 1182, 1355
BstMAI	GTCTC	3 cut(s)	557, 1041, 1113
BstMBI	GATC	8 cut(s)	42, 618, 780, 820, 939, 965, 1179, 1352
BstMWI	GCNNNNNNNGC	4 cut(s)	470, 479, 494, 844
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	2 cut(s)	851, 955
BstPI	GGTNACC	1 cut(s)	1163
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	2 cut(s)	840, 1068
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	965
BstYI	RGATCY	1 cut(s)	965
BtgI	CCRYGG	1 cut(s)	474
BtgZI	GCGATG	1 cut(s)	503
BtsCI	GGATG	4 cut(s)	106, 400, 511, 1204
BtsIMutI	CAGTG	4 cut(s)	84, 449, 840, 1216
Cac8I	GCNNGC	5 cut(s)	177, 417, 495, 642, 678
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	1218
CviAII	CATG	6 cut(s)	475, 848, 932, 952, 1088, 1219
DdeI	CTNAG	6 cut(s)	193, 384, 408, 553, 751, 828
DpnI	GATC	8 cut(s)	44, 620, 782, 822, 941, 967, 1181, 1354
DpnII	GATC	8 cut(s)	42, 618, 780, 820, 939, 965, 1179, 1352
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Ecl136II	GAGCTC	1 cut(s)	1150
Eco130I	CCWWGG	3 cut(s)	474, 971, 1134
Eco24I	GRGCYC	1 cut(s)	1152
Eco31I	GGTCTC	1 cut(s)	1113
Eco53kI	GAGCTC	1 cut(s)	1150
Eco91I	GGTNACC	1 cut(s)	1163
EcoICRI	GAGCTC	1 cut(s)	1150
EcoO65I	GGTNACC	1 cut(s)	1163
EcoRI	GAATTC	1 cut(s)	1214
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	3 cut(s)	474, 971, 1134
EcoT38I	GRGCYC	1 cut(s)	1152
ErhI	CCWWGG	3 cut(s)	474, 971, 1134
FaeI	CATG	6 cut(s)	478, 851, 935, 955, 1091, 1222
FatI	CATG	6 cut(s)	474, 847, 931, 951, 1087, 1218
FauI	CCCGC	1 cut(s)	1076
FauNDI	CATATG	2 cut(s)	760, 1311
FbaI	TGATCA	1 cut(s)	939
FokI	GGATG	4 cut(s)	113, 407, 498, 1211
FriOI	GRGCYC	1 cut(s)	1152
FspBI	CTAG	5 cut(s)	677, 896, 972, 1109, 1124
GsaI	CCCAGC	1 cut(s)	690
GsuI	CTGGAG	2 cut(s)	168, 1176
HapII	CCGG	1 cut(s)	1196
Hin1II	CATG	6 cut(s)	478, 851, 935, 955, 1091, 1222
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	6 cut(s)	167, 299, 596, 694, 764, 1187
HpaII	CCGG	1 cut(s)	1196
HphI	GGTGA	1 cut(s)	1238
Hpy166II	GTNNAC	2 cut(s)	838, 1191
Hpy188I	TCNGA	6 cut(s)	10, 532, 773, 965, 1286, 1387
Hpy188III	TCNNGA	6 cut(s)	185, 257, 698, 902, 1155, 1219
Hpy8I	GTNNAC	2 cut(s)	838, 1191
Hpy99I	CGWCG	1 cut(s)	1391
HpyAV	CCTTC	4 cut(s)	346, 646, 1216, 1225
HpyCH4III	ACNGT	3 cut(s)	337, 453, 1063
HpyCH4IV	ACGT	1 cut(s)	1334
HpyF10VI	GCNNNNNNNGC	4 cut(s)	470, 479, 494, 844
HpyF3I	CTNAG	6 cut(s)	193, 384, 408, 553, 751, 828
HpySE526I	ACGT	1 cut(s)	1334
Hsp92II	CATG	6 cut(s)	478, 851, 935, 955, 1091, 1222
Ksp22I	TGATCA	1 cut(s)	939
Kzo9I	GATC	8 cut(s)	42, 618, 780, 820, 939, 965, 1179, 1352
LmnI	GCTCC	3 cut(s)	431, 685, 1147
LweI	GCATC	3 cut(s)	480, 663, 920
MaeI	CTAG	5 cut(s)	677, 896, 972, 1109, 1124
MaeII	ACGT	1 cut(s)	1334
MaeIII	GTNAC	5 cut(s)	135, 403, 856, 1079, 1163
MalI	GATC	8 cut(s)	44, 620, 782, 822, 941, 967, 1181, 1354
MboI	GATC	8 cut(s)	42, 618, 780, 820, 939, 965, 1179, 1352
MboII	GAAGA	5 cut(s)	37, 240, 368, 401, 1328
MflI	RGATCY	1 cut(s)	965
MhlI	GDGCHC	3 cut(s)	840, 1068, 1152
MlyI	GAGTC	1 cut(s)	1196
MmeI	TCCRAC	2 cut(s)	1007, 1410
MnlI	CCTC	5 cut(s)	365, 385, 430, 472, 704
MseI	TTAA	6 cut(s)	92, 287, 317, 458, 720, 795
MslI	CAYNNNNRTG	1 cut(s)	852
MspA1I	CMGCKG	1 cut(s)	1413
MspI	CCGG	1 cut(s)	1196
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	1135
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	4 cut(s)	470, 479, 494, 844
NcoI	CCATGG	1 cut(s)	474
NdeI	CATATG	2 cut(s)	760, 1311
NdeII	GATC	8 cut(s)	42, 618, 780, 820, 939, 965, 1179, 1352
NheI	GCTAGC	1 cut(s)	676
NlaIII	CATG	6 cut(s)	478, 851, 935, 955, 1091, 1222
NlaIV	GGNNCC	1 cut(s)	433
NmeAIII	GCCGAG	1 cut(s)	460
NmuCI	GTSAC	1 cut(s)	135
NspI	RCATGY	2 cut(s)	851, 955
PagI	TCATGA	1 cut(s)	1218
PctI	GAATGC	1 cut(s)	1135
PfeI	GAWTC	5 cut(s)	167, 299, 596, 694, 764
PleI	GAGTC	1 cut(s)	1195
PpsI	GAGTC	1 cut(s)	1195
PshBI	ATTAAT	1 cut(s)	317
PsiI	TTATAA	2 cut(s)	524, 1005
Psp124BI	GAGCTC	1 cut(s)	1152
Psp6I	CCWGG	1 cut(s)	82
PspEI	GGTNACC	1 cut(s)	1163
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	433
PstI	CTGCAG	1 cut(s)	466
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	965
PvuII	CAGCTG	1 cut(s)	1413
RseI	CAYNNNNRTG	1 cut(s)	852
SacI	GAGCTC	1 cut(s)	1152
SaqAI	TTAA	6 cut(s)	92, 287, 317, 458, 720, 795
Sau3AI	GATC	8 cut(s)	42, 618, 780, 820, 939, 965, 1179, 1352
SchI	GAGTC	1 cut(s)	1196
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	3 cut(s)	840, 1068, 1152
SfaNI	GCATC	3 cut(s)	480, 663, 920
SfcI	CTRYAG	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	852
SmlI	CTYRAG	2 cut(s)	342, 1340
SmoI	CTYRAG	2 cut(s)	342, 1340
SsiI	CCGC	1 cut(s)	1069
SspI	AATATT	2 cut(s)	315, 364
SspMI	CTAG	5 cut(s)	677, 896, 972, 1109, 1124
SstI	GAGCTC	1 cut(s)	1152
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	3 cut(s)	474, 971, 1134
TaaI	ACNGT	3 cut(s)	337, 453, 1063
TaiI	ACGT	1 cut(s)	1337
TaqI	TCGA	1 cut(s)	903
TfiI	GAWTC	5 cut(s)	167, 299, 596, 694, 764
Tru1I	TTAA	6 cut(s)	92, 287, 317, 458, 720, 795
Tru9I	TTAA	6 cut(s)	92, 287, 317, 458, 720, 795
TscAI	CASTG	4 cut(s)	84, 456, 840, 1216
TseFI	GTSAC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	5 cut(s)	240, 458, 728, 1207, 1235
TspGWI	ACGGA	3 cut(s)	619, 680, 1265
TspRI	CASTG	4 cut(s)	84, 456, 840, 1216
VneI	GTGCAC	1 cut(s)	836
VspI	ATTAAT	1 cut(s)	317
XapI	RAATTY	5 cut(s)	65, 533, 729, 1214, 1248
XceI	RCATGY	2 cut(s)	851, 955
XcmI	CCANNNNNNNNNTGG	1 cut(s)	840
XmaJI	CCTAGG	1 cut(s)	971
XspI	CTAG	5 cut(s)	677, 896, 972, 1109, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.