Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008343

Physical Location & Seq

Genomic Coordinates Forward (+)

9486100 .. 9496752

Gene Structure 10653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00341010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2580 bp

ATGGCGGCTTCTCTCCACACCCACCACTACCATCTTCATCTCCGCCGCTCTACCCCCTCCAAGCTCCACACCCATCAAGCCCCCATATTCTCACGGCGTTTTTTCCCAACCCGAAAACAAAGGGCTCTTACTCGTAGACAAAACCGCAAGGGTAGTAGAGATGGAACAACCGACTCATTTTGCTGGGTGTGCAGAGCTGGTTTGGAGATTGATAAGGTCTCGCCTGATGATGAAGGAAGTGAAAGGCCTCCTTTCGATATCAATTTGGCCGTCATTCTCGCCGGTTTCGCTTTCGAGGCCTATTCTAGTCCACCTGCTAATATTGGAAGGCGTGAAATTGATGCTGCAGATTGTAAGACAGTGTACCTTTCAGAGTCATTTGTGCGTGAGATATACGATGGCCAACTATCCGTGAAATTGAAAAAAGGCGTCAATCTTCCTGCCATGGATCCATGGGGAACAAGTGATCCATATGTGATCATGCAATTAGATGGTCAAGTTGGTAAAAGCAAGGTTAAATGGGGGACAAAAGAACCAACTTGGAACGAGGACTTCAATTTTAATATCAAGCAGCCTCCAACCAAAAATCTTCAGGTTGCTGCTTGGGATGCAAACCTTGTAACTCCACATAAGCGCATGGGGAATGCAGGCATCAATCTAGAATGCCTTTGTGATGGGAATTTACATGAAATACTGGTGGAATTGGAAGGAATGGGAGGTGGTGGGAAATTACTTATAGAGGTCAGATATGAAACTTTTGAAGAAATTGATGAGGGGAAAAAGTGGTGGATGCGGGTCCCCATTGTTTCTGAATTTCTCCGTAATAAGGGTTTTGAACCTGCTCTGAAAAAGTTTGTTGGCTCTGACACTGTGCAAGCACGTCAGTTTGCAGAATATGCTTTTGGGCAGTTAAAGTCATTCAATAATAATGCTTACCTTTGGAAGAATCTGATTTCAAGTAATGATGAAAGTGATAGGAAGGGCCCGGGGAAACCTAATAATTCTGCTGTTGTGTCAGGCGTGCCTTCCCAGATGGAGGGTATCGAGGGTTCTTTAGATAATGCAGACTGCAATGAAGTGAGCAATTTAGACGAGTCTAACAGAGATAATGGTGATGTGGAGAATGGAAATGCCTCTCAGCCAGTGAAAATACTCGATGATGAAATGCAGTCAGATAAGAACTTTTGGAAGAACTTTGCTAATGAGATCAATCAAAATGTTGTAGAGAAATTTGGGTTGCCAGTGCCAGGAAAATTAAAGTGGGATGGGTTTGATTTATTAGACAGAGTTGGTTTGCAGTCACAAAAGATAGCAGAAGCAACTTATGTTGAATCGGGGCTTGCAACTCCAGAAGTGTTAGATGTTGATAACGATAAAACAACAGCCCCACTTCCCATTAGCATTATGCAGTCTTCATTTCCAGATATAAAGGAAGCAACAAGGGAACTATTAAAGCAAACTGATTCTGTTTTAGGAATATTAATGGTTCTAACTGCAACAGTATCTCAAGCAAAGAAGGAAGAAAATATTGTAGGAGGGAGTGCAACTAAGGAAGAGGATGATGTCGTAACTGAGAAGCTTGCTAACTCACAGGGAGCCGAGGAGATGAAAGCACTGTTCTCAACTGCAGAAACTGCCATGGAGGCTTGGGCGATGCTCGCTACTTCTTTAGGACATCCAAGTTTTATAAAGTCTGAATTTGAGAAACTATGTTTCTTAGATAATGAGACGACAGACACACAGGTTGCAATTTGGCGTGATTCTGCACGGAAAAGATTAGTGATCGCTTTCAGGGGAACGGAGCAGGCAAGATGGAAGGACTTGCGAACGGATTTGATGCTAGCTCCTGCTGGGCTGAATCCAGAAAGGATAGGAGGAGACTTTAAGCAAGAAATTCAAGTTCATAGTGGCTTCTTAGGTGCATATGATTCTGTCAGAATAAGGATAATCTCTCTAATTAAATTGGCAATCGGTTATATTGATGATCTTGCTGAGCCGCTGCACAGATGGCATGTTTATGTAACTGGTCATAGTCTTGGTGGTGCATTGGCTACTCTCCTAGCTCTCGAACTTGCATCAAGTCAATTAGCAAAGCACGGAGTGATCACTATAAGCATGTATAATTTCGGATCTCCTAGGGTTGGGAACAAAAGATTTGCTGATGTTTATAATGAGAAAGTCAAAGATAGTTGGAGAGTTGTAAATCACAGAGACATTATCCCAACTGTGCCCCGCTTGATGGGTTACTGCCATGTAGCTCAACCTGTTTATCTAGCAACAGGAGACCTAACGAATGCCTTGGAAAATATGGAGCTCTCTGGAGATGGTTACCAAGCTGATATGATCGGGGAGTCCACACCAGATGTTCTTGTCAGTGAATTTATGAAGGGTGAGAAGGAACTTATACAGAAGATTTTACAGACTGAAATAAATATATTCCGTTCAATCAGAGATGGAACTGCACTTATGCAACATATGGAAGATTTTTACTACATCACGTTGCTTGAGAATGTGAGATCAAATTACCAACCTGTTGTCAAGTCGTTATCCGACGAACAATCCAACAAAACAATCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Lipase_3

Protein Analysis

859

Amino Acids

95.94

Weight (kDa)

5.44

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	134 - 229	3.5e-20	C2 domain
Lipase_3	PF01764	594 - 745	3.5e-28	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13550 AT4G13550 AT4G13550
fragaria_vesca	FvH4_4g05250 FvH4_4g05250
malus_domestica	MD13G1226600.v1.1
prunus_persica	Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1 Prupe.1G054000_v2.0.a1
pyrus_communis	pycom13g19960
rosa_chinensis	RchiOBHm_Chr4g0396161
rosa_laevigata	RLG00000009564
rosa_multiflora	Rmu_sc0006325.1_g000041
rosa_roxburghii	Rroxscaffold_5G00341010
rosa_rugosa	Rorug03G0351200 Rorug03G0351300 Rorug03G0351300
rosa_samantha	Rh4BG065200 Rh4CG072000 Rh4DG062000
rosa_wichuraiana	Rw4G005390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1688, 2169
AarI	CACCTGC	1 cut(s)	322
Acc36I	ACCTGC	2 cut(s)	322, 847
AccBSI	CCGCTC	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	136
AciI	CCGC	7 cut(s)	5, 43, 46, 145, 793, 1997, 2233
AclWI	GGATC	4 cut(s)	443, 456, 461, 2137
AcoI	YGGCCR	2 cut(s)	267, 400
AcsI	RAATTY	6 cut(s)	679, 812, 1229, 1697, 1893, 2378
AcuI	CTGAAG	1 cut(s)	575
AcyI	GRCGYC	1 cut(s)	429
AdeI	CACNNNGTG	1 cut(s)	2101
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	5 cut(s)	826, 1036, 1247, 2141, 2239
AgsI	TTSAA	9 cut(s)	421, 556, 761, 836, 922, 957, 1331, 1898, 2445
AjiI	CACGTC	1 cut(s)	881
AjnI	CCWGG	1 cut(s)	1246
AjuI	GAANNNNNNNTTGG	2 cut(s)	885, 917
AloI	GAACNNNNNNTCC	2 cut(s)	451, 483
AluBI	AGCT	9 cut(s)	64, 197, 1579, 1844, 2063, 2258, 2314, 2336, 2577
AluI	AGCT	9 cut(s)	64, 197, 1579, 1844, 2063, 2258, 2314, 2336, 2577
Alw21I	GWGCWC	1 cut(s)	2316
Alw26I	GTCTC	5 cut(s)	223, 1721, 1872, 2205, 2277
AlwI	GGATC	4 cut(s)	443, 456, 461, 2137
AlwNI	CAGNNNCTG	1 cut(s)	1634
Ama87I	CYCGRG	1 cut(s)	985
AoxI	GGCC	5 cut(s)	245, 267, 297, 400, 982
ApaI	GGGCCC	1 cut(s)	986
ApeKI	GCWGC	4 cut(s)	344, 571, 599, 1999
ApoI	RAATTY	6 cut(s)	679, 812, 1229, 1697, 1893, 2378
AseI	ATTAAT	1 cut(s)	1481
AspA2I	CCTAGG	1 cut(s)	2135
AspLEI	GCGC	1 cut(s)	636
AspS9I	GGNCC	3 cut(s)	796, 982, 983
AsuC2I	CCSGG	2 cut(s)	986, 987
AsuHPI	GGTGA	2 cut(s)	1124, 2402
AsuNHI	GCTAGC	1 cut(s)	1840
AvaI	CYCGRG	1 cut(s)	985
AvaII	GGWCC	1 cut(s)	796
AvrII	CCTAGG	1 cut(s)	2135
BaeGI	GKGCMC	2 cut(s)	986, 2232
BalI	TGGCCA	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	448
BanII	GRGCYC	3 cut(s)	127, 986, 2316
BbsI	GAAGAC	1 cut(s)	1404
Bbv12I	GWGCWC	1 cut(s)	2316
BbvI	GCAGC	4 cut(s)	331, 583, 586, 1986
BceAI	ACGGC	2 cut(s)	110, 254
BciT130I	CCWGG	1 cut(s)	1248
BclI	TGATCA	2 cut(s)	477, 2103
BcnI	CCSGG	2 cut(s)	986, 987
BcoDI	GTCTC	5 cut(s)	223, 1721, 1872, 2205, 2277
BfaI	CTAG	6 cut(s)	306, 659, 1841, 2060, 2136, 2273
BfmI	CTRYAG	2 cut(s)	345, 1626
BfuAI	ACCTGC	2 cut(s)	322, 847
BglI	GCCNNNNNGGC	1 cut(s)	1643
BisI	GCNGC	7 cut(s)	6, 46, 345, 572, 600, 1997, 2000
BlnI	CCTAGG	1 cut(s)	2135
BlpI	GCTNAGC	1 cut(s)	1992
BlsI	GCNGC	7 cut(s)	7, 47, 346, 573, 601, 1998, 2001
Bme1390I	CCNGG	3 cut(s)	986, 987, 1248
Bme18I	GGWCC	1 cut(s)	796
BmeT110I	CYCGRG	1 cut(s)	985
BmgBI	CACGTC	1 cut(s)	881
BmgT120I	GGNCC	3 cut(s)	796, 982, 983
BmiI	GGNNCC	5 cut(s)	450, 797, 798, 984, 1597
BmrFI	CCNGG	3 cut(s)	986, 987, 1248
BmsI	GCATC	7 cut(s)	331, 598, 660, 780, 1644, 1827, 2084
BmtI	GCTAGC	1 cut(s)	1844
BpiI	GAAGAC	1 cut(s)	1404
BpmI	CTGGAG	2 cut(s)	1332, 2340
Bpu1102I	GCTNAGC	1 cut(s)	1992
BpuEI	CTTGAG	2 cut(s)	1491, 2525
BpuMI	CCSGG	2 cut(s)	986, 987
BsaHI	GRCGYC	1 cut(s)	429
BsaI	GGTCTC	2 cut(s)	223, 2277
BsaJI	CCNNGG	8 cut(s)	444, 452, 985, 986, 1599, 1638, 2135, 2298
Bsc4I	CCNNNNNNNGG	5 cut(s)	826, 1036, 1247, 2141, 2239
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	4 cut(s)	699, 1142, 1241, 2029
Bse3DI	GCAATG	1 cut(s)	1078
BseBI	CCWGG	1 cut(s)	1248
BseDI	CCNNGG	8 cut(s)	444, 452, 985, 986, 1599, 1638, 2135, 2298
BseGI	GGATG	5 cut(s)	613, 795, 1270, 1564, 1675
BseLI	CCNNNNNNNGG	5 cut(s)	826, 1036, 1247, 2141, 2239
BseMI	GCAATG	1 cut(s)	1078
BseMII	CTCAG	3 cut(s)	1151, 1563, 1983
BseNI	ACTGG	4 cut(s)	699, 1142, 1241, 2029
BseRI	GAGGAG	2 cut(s)	1616, 1890
BseSI	GKGCMC	2 cut(s)	986, 2232
BseXI	GCAGC	4 cut(s)	331, 583, 586, 1986
BseYI	CCCAGC	2 cut(s)	183, 1850
BsgI	GTGCAG	4 cut(s)	211, 1749, 1985, 2445
BshFI	GGCC	5 cut(s)	247, 269, 299, 402, 984
BsiHKAI	GWGCWC	1 cut(s)	2316
BsiHKCI	CYCGRG	1 cut(s)	985
BsiSI	CCGG	2 cut(s)	282, 986
BslFI	GGGAC	2 cut(s)	538, 782
BslI	CCNNNNNNNGG	5 cut(s)	826, 1036, 1247, 2141, 2239
BsmAI	GTCTC	5 cut(s)	223, 1721, 1872, 2205, 2277
BsmBI	CGTCTC	1 cut(s)	1721
BsmFI	GGGAC	2 cut(s)	538, 782
BsmI	GAATGC	3 cut(s)	649, 668, 2299
BsnI	GGCC	5 cut(s)	247, 269, 299, 402, 984
Bso31I	GGTCTC	2 cut(s)	223, 2277
BsoBI	CYCGRG	1 cut(s)	985
Bsp120I	GGGCCC	1 cut(s)	982
Bsp1286I	GDGCHC	4 cut(s)	127, 986, 2232, 2316
Bsp1720I	GCTNAGC	1 cut(s)	1992
Bsp19I	CCATGG	3 cut(s)	444, 452, 1638
BspACI	CCGC	7 cut(s)	5, 43, 46, 145, 793, 1997, 2233
BspANI	GGCC	5 cut(s)	247, 269, 299, 402, 984
BspCNI	CTCAG	3 cut(s)	1150, 1564, 1984
BspLI	GGNNCC	5 cut(s)	450, 797, 798, 984, 1597
BspMAI	CTGCAG	2 cut(s)	349, 1630
BspMI	ACCTGC	2 cut(s)	322, 847
BspOI	GCTAGC	1 cut(s)	1844
BspPI	GGATC	4 cut(s)	443, 456, 461, 2137
BspTNI	GGTCTC	2 cut(s)	223, 2277
BsrBI	CCGCTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	1078
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	4 cut(s)	699, 1142, 1241, 2029
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	8 cut(s)	444, 452, 985, 986, 1599, 1638, 2135, 2298
BssNI	GRCGYC	1 cut(s)	429
BssT1I	CCWWGG	5 cut(s)	444, 452, 1638, 2135, 2298
Bst2UI	CCWGG	1 cut(s)	1248
Bst4CI	ACNGT	5 cut(s)	361, 871, 1501, 1617, 2227
Bst6I	CTCTTC	1 cut(s)	1548
BstACI	GRCGYC	1 cut(s)	429
BstAPI	GCANNNNNTGC	2 cut(s)	896, 1634
BstC8I	GCNNGC	8 cut(s)	649, 876, 1022, 1341, 1581, 1659, 1806, 1842
BstDEI	CTNAG	6 cut(s)	1137, 1548, 1572, 1717, 1915, 1992
BstDSI	CCRYGG	3 cut(s)	444, 452, 1638
BstEII	GGTNACC	1 cut(s)	2327
BstF5I	GGATG	5 cut(s)	613, 795, 1270, 1564, 1675
BstHHI	GCGC	1 cut(s)	636
BstMAI	GTCTC	5 cut(s)	223, 1721, 1872, 2205, 2277
BstMWI	GCNNNNNNNGC	9 cut(s)	189, 287, 296, 608, 896, 1634, 1643, 1658, 2008
BstNI	CCWGG	1 cut(s)	1248
BstNSI	RCATGY	2 cut(s)	2015, 2119
BstPI	GGTNACC	1 cut(s)	2327
BstSCI	CCNGG	3 cut(s)	984, 985, 1246
BstSFI	CTRYAG	2 cut(s)	345, 1626
BstSLI	GKGCMC	2 cut(s)	986, 2232
BstV1I	GCAGC	4 cut(s)	331, 583, 586, 1986
BstV2I	GAAGAC	1 cut(s)	1404
BstX2I	RGATCY	2 cut(s)	448, 2129
BstYI	RGATCY	2 cut(s)	448, 2129
BsuRI	GGCC	5 cut(s)	247, 269, 299, 402, 984
BtgI	CCRYGG	3 cut(s)	444, 452, 1638
BtgZI	GCGATG	1 cut(s)	1667
BtrI	CACGTC	1 cut(s)	881
BtsCI	GGATG	5 cut(s)	613, 795, 1270, 1564, 1675
BtsIMutI	CAGTG	6 cut(s)	366, 867, 1149, 1248, 1613, 2380
BveI	ACCTGC	2 cut(s)	322, 847
Cac8I	GCNNGC	8 cut(s)	649, 876, 1022, 1341, 1581, 1659, 1806, 1842
CaiI	CAGNNNCTG	1 cut(s)	1634
CfoI	GCGC	1 cut(s)	636
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	3 cut(s)	796, 982, 983
Cfr9I	CCCGGG	1 cut(s)	985
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	9 cut(s)	445, 453, 481, 637, 686, 1639, 2012, 2116, 2252
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	6 cut(s)	1137, 1548, 1572, 1717, 1915, 1992
DraIII	CACNNNGTG	1 cut(s)	2101
EaeI	YGGCCR	2 cut(s)	267, 400
Eam1104I	CTCTTC	1 cut(s)	1548
EarI	CTCTTC	1 cut(s)	1548
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	2314
Eco130I	CCWWGG	5 cut(s)	444, 452, 1638, 2135, 2298
Eco147I	AGGCCT	2 cut(s)	247, 299
Eco24I	GRGCYC	3 cut(s)	127, 986, 2316
Eco31I	GGTCTC	2 cut(s)	223, 2277
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	796
Eco53kI	GAGCTC	1 cut(s)	2314
Eco57I	CTGAAG	1 cut(s)	575
Eco88I	CYCGRG	1 cut(s)	985
Eco91I	GGTNACC	1 cut(s)	2327
EcoICRI	GAGCTC	1 cut(s)	2314
EcoO109I	RGGNCCY	2 cut(s)	796, 982
EcoO65I	GGTNACC	1 cut(s)	2327
EcoRII	CCWGG	1 cut(s)	1246
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	5 cut(s)	444, 452, 1638, 2135, 2298
EcoT38I	GRGCYC	3 cut(s)	127, 986, 2316
ErhI	CCWWGG	5 cut(s)	444, 452, 1638, 2135, 2298
Esp3I	CGTCTC	1 cut(s)	1721
FaeI	CATG	9 cut(s)	448, 456, 484, 640, 689, 1642, 2015, 2119, 2255
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FaqI	GGGAC	2 cut(s)	538, 782
FatI	CATG	9 cut(s)	444, 452, 480, 636, 685, 1638, 2011, 2115, 2251
FauI	CCCGC	2 cut(s)	786, 2240
FauNDI	CATATG	3 cut(s)	472, 1924, 2475
FbaI	TGATCA	2 cut(s)	477, 2103
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	7 cut(s)	6, 46, 345, 572, 600, 1997, 2000
FokI	GGATG	5 cut(s)	620, 802, 1277, 1571, 1662
FriOI	GRGCYC	3 cut(s)	127, 986, 2316
Fsp4HI	GCNGC	7 cut(s)	6, 46, 345, 572, 600, 1997, 2000
FspBI	CTAG	6 cut(s)	306, 659, 1841, 2060, 2136, 2273
GlaI	GCGC	1 cut(s)	635
GluI	GCNGC	7 cut(s)	6, 46, 345, 572, 600, 1997, 2000
GsaI	CCCAGC	2 cut(s)	187, 1854
GsuI	CTGGAG	2 cut(s)	1332, 2340
HaeIII	GGCC	5 cut(s)	247, 269, 299, 402, 984
HapII	CCGG	2 cut(s)	282, 986
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	1 cut(s)	636
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	9 cut(s)	448, 456, 484, 640, 689, 1642, 2015, 2119, 2255
Hin6I	GCGC	1 cut(s)	634
HinP1I	GCGC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	1577
HpaII	CCGG	2 cut(s)	282, 986
HphI	GGTGA	2 cut(s)	1124, 2402
Hpy166II	GTNNAC	4 cut(s)	137, 311, 364, 2355
Hpy188III	TCNNGA	6 cut(s)	659, 1349, 1421, 1862, 2066, 2319
Hpy8I	GTNNAC	4 cut(s)	137, 311, 364, 2355
Hpy99I	CGWCG	1 cut(s)	2555
HpyAV	CCTTC	9 cut(s)	227, 321, 701, 973, 1035, 1510, 1810, 2380, 2389
HpyCH4III	ACNGT	5 cut(s)	361, 871, 1501, 1617, 2227
HpyCH4IV	ACGT	2 cut(s)	880, 2498
HpyF10VI	GCNNNNNNNGC	9 cut(s)	189, 287, 296, 608, 896, 1634, 1643, 1658, 2008
HpyF3I	CTNAG	6 cut(s)	1137, 1548, 1572, 1717, 1915, 1992
HpySE526I	ACGT	2 cut(s)	880, 2498
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	9 cut(s)	448, 456, 484, 640, 689, 1642, 2015, 2119, 2255
HspAI	GCGC	1 cut(s)	634
KflI	GGGWCCC	1 cut(s)	796
Ksp22I	TGATCA	2 cut(s)	477, 2103
LmnI	GCTCC	5 cut(s)	69, 1595, 1801, 1849, 2311
Lsp1109I	GCAGC	4 cut(s)	331, 583, 586, 1986
LweI	GCATC	7 cut(s)	331, 598, 660, 780, 1644, 1827, 2084
MaeI	CTAG	6 cut(s)	306, 659, 1841, 2060, 2136, 2273
MaeII	ACGT	2 cut(s)	880, 2498
MaeIII	GTNAC	6 cut(s)	619, 1299, 1567, 2020, 2243, 2327
MbiI	CCGCTC	1 cut(s)	48
MflI	RGATCY	2 cut(s)	448, 2129
MhlI	GDGCHC	4 cut(s)	127, 986, 2232, 2316
MlsI	TGGCCA	1 cut(s)	402
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	4 cut(s)	167, 383, 1103, 2360
MmeI	TCCRAC	3 cut(s)	602, 2171, 2574
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	8 cut(s)	516, 561, 911, 1256, 1451, 1481, 1884, 1959
MslI	CAYNNNNRTG	1 cut(s)	2016
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	2 cut(s)	1999, 2577
MspI	CCGG	2 cut(s)	282, 986
MspR9I	CCNGG	3 cut(s)	986, 987, 1248
Mva1269I	GAATGC	3 cut(s)	649, 668, 2299
MvaI	CCWGG	1 cut(s)	1248
MwoI	GCNNNNNNNGC	9 cut(s)	189, 287, 296, 608, 896, 1634, 1643, 1658, 2008
NciI	CCSGG	2 cut(s)	986, 987
NcoI	CCATGG	3 cut(s)	444, 452, 1638
NdeI	CATATG	3 cut(s)	472, 1924, 2475
NheI	GCTAGC	1 cut(s)	1840
NlaIII	CATG	9 cut(s)	448, 456, 484, 640, 689, 1642, 2015, 2119, 2255
NlaIV	GGNNCC	5 cut(s)	450, 797, 798, 984, 1597
NmeAIII	GCCGAG	1 cut(s)	1624
NmuCI	GTSAC	1 cut(s)	1299
NspI	RCATGY	2 cut(s)	2015, 2119
PaqCI	CACCTGC	1 cut(s)	322
PceI	AGGCCT	2 cut(s)	247, 299
PctI	GAATGC	3 cut(s)	649, 668, 2299
PfeI	GAWTC	6 cut(s)	946, 1331, 1463, 1760, 1858, 1928
PkrI	GCNGC	7 cut(s)	7, 47, 346, 573, 601, 1998, 2001
PleI	GAGTC	4 cut(s)	167, 382, 1102, 2359
PpsI	GAGTC	4 cut(s)	167, 382, 1102, 2359
PpuMI	RGGWCCY	1 cut(s)	796
PshBI	ATTAAT	1 cut(s)	1481
PsiI	TTATAA	2 cut(s)	1688, 2169
Psp124BI	GAGCTC	1 cut(s)	2316
Psp5II	RGGWCCY	1 cut(s)	796
Psp6I	CCWGG	1 cut(s)	1246
PspEI	GGTNACC	1 cut(s)	2327
PspFI	CCCAGC	2 cut(s)	183, 1850
PspGI	CCWGG	1 cut(s)	1246
PspN4I	GGNNCC	5 cut(s)	450, 797, 798, 984, 1597
PspOMI	GGGCCC	1 cut(s)	982
PspPI	GGNCC	3 cut(s)	796, 982, 983
PspPPI	RGGWCCY	1 cut(s)	796
PsrI	GAACNNNNNNTAC	2 cut(s)	1033, 1065
PstI	CTGCAG	2 cut(s)	349, 1630
PstNI	CAGNNNCTG	1 cut(s)	1634
PsuI	RGATCY	2 cut(s)	448, 2129
PvuII	CAGCTG	1 cut(s)	2577
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	2016
SacI	GAGCTC	1 cut(s)	2316
SaqAI	TTAA	8 cut(s)	516, 561, 911, 1256, 1451, 1481, 1884, 1959
SatI	GCNGC	7 cut(s)	6, 46, 345, 572, 600, 1997, 2000
Sau96I	GGNCC	3 cut(s)	796, 982, 983
SchI	GAGTC	4 cut(s)	167, 383, 1103, 2360
ScrFI	CCNGG	3 cut(s)	986, 987, 1248
SduI	GDGCHC	4 cut(s)	127, 986, 2232, 2316
SfaNI	GCATC	7 cut(s)	331, 598, 660, 780, 1644, 1827, 2084
SfcI	CTRYAG	2 cut(s)	345, 1626
SinI	GGWCC	1 cut(s)	796
SmaI	CCCGGG	1 cut(s)	987
SmiMI	CAYNNNNRTG	1 cut(s)	2016
SmlI	CTYRAG	2 cut(s)	1506, 2504
SmoI	CTYRAG	2 cut(s)	1506, 2504
SseBI	AGGCCT	2 cut(s)	247, 299
SsiI	CCGC	7 cut(s)	5, 43, 46, 145, 793, 1997, 2233
SspI	AATATT	3 cut(s)	322, 1479, 1528
SspMI	CTAG	6 cut(s)	306, 659, 1841, 2060, 2136, 2273
SstI	GAGCTC	1 cut(s)	2316
StuI	AGGCCT	2 cut(s)	247, 299
StyD4I	CCNGG	3 cut(s)	984, 985, 1246
StyI	CCWWGG	5 cut(s)	444, 452, 1638, 2135, 2298
TaaI	ACNGT	5 cut(s)	361, 871, 1501, 1617, 2227
TaiI	ACGT	2 cut(s)	883, 2501
TaqI	TCGA	5 cut(s)	255, 294, 1044, 1155, 2067
TauI	GCSGC	3 cut(s)	8, 48, 1999
TfiI	GAWTC	6 cut(s)	946, 1331, 1463, 1760, 1858, 1928
Tru1I	TTAA	8 cut(s)	516, 561, 911, 1256, 1451, 1481, 1884, 1959
Tru9I	TTAA	8 cut(s)	516, 561, 911, 1256, 1451, 1481, 1884, 1959
TscAI	CASTG	6 cut(s)	366, 874, 1149, 1248, 1620, 2380
TseFI	GTSAC	1 cut(s)	1299
TseI	GCWGC	4 cut(s)	344, 571, 599, 1999
Tsp45I	GTSAC	1 cut(s)	1299
TspGWI	ACGGA	7 cut(s)	400, 809, 1783, 1814, 1844, 2112, 2429
TspMI	CCCGGG	1 cut(s)	985
TspRI	CASTG	6 cut(s)	366, 874, 1149, 1248, 1620, 2380
VpaK11BI	GGWCC	1 cut(s)	796
VspI	ATTAAT	1 cut(s)	1481
XapI	RAATTY	6 cut(s)	679, 812, 1229, 1697, 1893, 2378
XbaI	TCTAGA	1 cut(s)	658
XceI	RCATGY	2 cut(s)	2015, 2119
XmaI	CCCGGG	1 cut(s)	985
XmaJI	CCTAGG	1 cut(s)	2135
XmiI	GTMKAC	1 cut(s)	136
XspI	CTAG	6 cut(s)	306, 659, 1841, 2060, 2136, 2273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.