Prupe.1G121300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018526
Physical Location & Seq
Forward (+)
9541635 .. 9542661
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G121300.1

Sequence Viewer

Length: 579 bp
ATGACGAGTAAACAAGTGAAAAATCAGGTGAGAGACACTGTTGAGGGAGGCTTCGACACCCTCCACAGGGTTGCCGATGTAGTGACTTTTCCTTTGGCCCCTCTGGACGGTGCCGTCCATGGCACGGCCCGAGGGGTCCTCAACTGGCTCACAGATAACCATCCTGAAGATAGATCCAAATCCAAGCAAAAATGTCTTCCCAAACCACAACAACACTGCAACAACGGCGGTGGCTACGGAGGCGGCTACGGAAACGGGGGCGGCTACGGAAATGGGGGTGGCTACGGAAACGGTGGCGGCTATGGAAACGGGGGCGGCTATGGCGGAGGAAACGATGGCTATGGGGGTGGTGGATATGGTGGAAATCCTGCTTCTGGAAATCCCAACCGCAGAAATTTCAATTTTAAAGGGAATGAGGTTAGCAACAACGAGGGCCCAGCTTTTGGATTTAACAACTTTGGCAACAGGCGTGGCGGCGGCCCCTACAGTGGCGATTCTGAATTCGGCTTTGAGAACAATAAACTGAACGGGAACAAGAACCGCGCTGAGGGATTTAACGGCTTTGGCAACGAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

19.87

Weight (kDa)

8.49

Isoelectric Point (pI)

21.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 443
AccII CGCG 1 cut(s) 543
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 2 cut(s) 394, 500
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 8 cut(s) 66, 67, 107, 124, 374, 443, 488, 547
AgsI TTSAA 1 cut(s) 400
AluBI AGCT 1 cut(s) 440
AluI AGCT 1 cut(s) 440
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 4 cut(s) 96, 126, 433, 478
ApaI GGGCCC 1 cut(s) 437
ApoI RAATTY 2 cut(s) 394, 500
ArsI GACNNNNNNTTYG 2 cut(s) 76, 108
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 6 cut(s) 97, 127, 136, 433, 434, 479
AsuHPI GGTGA 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 437
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 437
BbsI GAAGAC 1 cut(s) 188
BbvCI CCTCAGC 1 cut(s) 546
BccI CCATC 2 cut(s) 168, 329
BceAI ACGGC 4 cut(s) 98, 141, 241, 574
BcoDI GTCTC 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 484
BisI GCNGC 6 cut(s) 244, 262, 298, 316, 475, 478
BlsI GCNGC 6 cut(s) 245, 263, 299, 317, 476, 479
BmcAI AGTACT 1 cut(s) 575
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 6 cut(s) 97, 127, 136, 433, 434, 479
BmiI GGNNCC 5 cut(s) 99, 112, 137, 435, 481
BpiI GAAGAC 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 123, 155
Bpu10I CCTNAGC 1 cut(s) 546
BsaBI GATNNNNATC 2 cut(s) 159, 178
BsaJI CCNNGG 2 cut(s) 118, 130
Bsc4I CCNNNNNNNGG 8 cut(s) 66, 67, 107, 124, 374, 443, 488, 547
Bse1I ACTGG 1 cut(s) 149
Bse8I GATNNNNATC 2 cut(s) 159, 178
BseDI CCNNGG 2 cut(s) 118, 130
BseGI GGATG 1 cut(s) 160
BseJI GATNNNNATC 2 cut(s) 159, 178
BseLI CCNNNNNNNGG 8 cut(s) 66, 67, 107, 124, 374, 443, 488, 547
BseMII CTCAG 1 cut(s) 537
BseNI ACTGG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 437
BseYI CCCAGC 1 cut(s) 436
Bsh1236I CGCG 1 cut(s) 543
BshFI GGCC 4 cut(s) 98, 128, 435, 480
BshNI GGYRCC 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 129
BslI CCNNNNNNNGG 8 cut(s) 66, 67, 107, 124, 374, 443, 488, 547
BsmAI GTCTC 1 cut(s) 27
BsnI GGCC 4 cut(s) 98, 128, 435, 480
BsoBI CYCGRG 1 cut(s) 129
Bsp120I GGGCCC 1 cut(s) 433
Bsp1286I GDGCHC 1 cut(s) 437
Bsp143I GATC 1 cut(s) 173
Bsp19I CCATGG 1 cut(s) 118
BspANI GGCC 4 cut(s) 98, 128, 435, 480
BspCNI CTCAG 1 cut(s) 538
BspFNI CGCG 1 cut(s) 543
BspLI GGNNCC 5 cut(s) 99, 112, 137, 435, 481
BspPI GGATC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 2 cut(s) 118, 130
BssMI GATC 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 118
Bst4CI ACNGT 4 cut(s) 40, 110, 293, 488
BstDEI CTNAG 1 cut(s) 546
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 543
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 1 cut(s) 176
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 3 cut(s) 225, 240, 321
BstSFI CTRYAG 1 cut(s) 484
BstSLI GKGCMC 1 cut(s) 437
BstUI CGCG 1 cut(s) 543
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 4 cut(s) 98, 128, 435, 480
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 3 cut(s) 36, 214, 493
CfoI GCGC 1 cut(s) 545
Cfr13I GGNCC 6 cut(s) 97, 127, 136, 433, 434, 479
Csp6I GTAC 1 cut(s) 574
CspCI CAANNNNNGTGG 4 cut(s) 211, 246, 451, 486
CviAII CATG 1 cut(s) 119
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 1 cut(s) 546
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
DraI TTTAAA 1 cut(s) 406
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
EciI GGCGGA 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 437
Eco47I GGWCC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 129
EcoO109I RGGNCCY 2 cut(s) 136, 433
EcoRI GAATTC 1 cut(s) 500
EcoT14I CCWWGG 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 1 cut(s) 122
FaiI YATR 5 cut(s) 120, 303, 321, 342, 357
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 6 cut(s) 244, 262, 298, 316, 475, 478
FokI GGATG 1 cut(s) 147
FriOI GRGCYC 1 cut(s) 437
Fsp4HI GCNGC 6 cut(s) 244, 262, 298, 316, 475, 478
GlaI GCGC 1 cut(s) 544
GluI GCNGC 6 cut(s) 244, 262, 298, 316, 475, 478
GsaI CCCAGC 1 cut(s) 440
HaeIII GGCC 4 cut(s) 98, 128, 435, 480
HhaI GCGC 1 cut(s) 545
Hin1II CATG 1 cut(s) 122
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HinfI GANTC 1 cut(s) 494
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 1 cut(s) 499
Hpy188III TCNNGA 3 cut(s) 104, 164, 375
Hpy8I GTNNAC 1 cut(s) 11
HpyCH4III ACNGT 4 cut(s) 40, 110, 293, 488
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 240, 321
HpyF3I CTNAG 1 cut(s) 546
Hsp92II CATG 1 cut(s) 122
HspAI GCGC 1 cut(s) 543
Kzo9I GATC 1 cut(s) 173
LpnPI CCDG 9 cut(s) 11, 52, 89, 130, 177, 360, 381, 450, 451
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MboII GAAGA 2 cut(s) 179, 188
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 437
MluCI AATT 3 cut(s) 394, 400, 500
MseI TTAA 3 cut(s) 405, 450, 555
MvnI CGCG 1 cut(s) 543
MwoI GCNNNNNNNGC 3 cut(s) 225, 240, 321
NcoI CCATGG 1 cut(s) 118
NdeII GATC 1 cut(s) 173
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 5 cut(s) 99, 112, 137, 435, 481
NmuCI GTSAC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 494
PflMI CCANNNNNTGG 1 cut(s) 443
PkrI GCNGC 6 cut(s) 245, 263, 299, 317, 476, 479
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 436
PspN4I GGNNCC 5 cut(s) 99, 112, 137, 435, 481
PspOMI GGGCCC 1 cut(s) 433
PspPI GGNCC 6 cut(s) 97, 127, 136, 433, 434, 479
PspPPI RGGWCCY 1 cut(s) 136
PsuI RGATCY 1 cut(s) 173
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
SaqAI TTAA 3 cut(s) 405, 450, 555
SatI GCNGC 6 cut(s) 244, 262, 298, 316, 475, 478
Sau3AI GATC 1 cut(s) 173
Sau96I GGNCC 6 cut(s) 97, 127, 136, 433, 434, 479
ScaI AGTACT 1 cut(s) 575
SduI GDGCHC 1 cut(s) 437
SetI ASST 3 cut(s) 30, 420, 442
SfcI CTRYAG 1 cut(s) 484
SinI GGWCC 1 cut(s) 136
Sse9I AATT 3 cut(s) 394, 400, 500
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 4 cut(s) 40, 110, 293, 488
TaqI TCGA 1 cut(s) 54
TasI AATT 3 cut(s) 394, 400, 500
TatI WGTACW 1 cut(s) 573
TauI GCSGC 6 cut(s) 246, 264, 300, 318, 477, 480
TfiI GAWTC 1 cut(s) 494
Tru1I TTAA 3 cut(s) 405, 450, 555
Tru9I TTAA 3 cut(s) 405, 450, 555
TscAI CASTG 3 cut(s) 43, 221, 493
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspGWI ACGGA 4 cut(s) 252, 264, 282, 300
TspRI CASTG 3 cut(s) 43, 221, 493
Van91I CCANNNNNTGG 1 cut(s) 443
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 2 cut(s) 394, 500
ZrmI AGTACT 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.