Prupe.1G498700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018526
Physical Location & Seq
Forward (+)
41303566 .. 41304021
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G498700.1

Sequence Viewer

Length: 249 bp
ATGGCTGGAACTGGAACCAATGATATTAAAATTAAAGGGTTCGATTTGAGCAACAACAGCGGCAACACGTCGGGATTAACCCACTTCGCCAACAGAGCTGATGGGGGCGACAAGGGCGACAATAAAATCGAGGTTGAGGGTGCTAAAGCGCAAGATAACAAGGGAAACTTGAAAGTACTTACCGATTTCGCCCAACGCGGTGAAGTGGGCAGGTCGGATCGCCAAGAACTTCTCAAGCCTCAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.69

Weight (kDa)

6.56

Isoelectric Point (pI)

11.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 201
AccII CGCG 1 cut(s) 198
AciI CCGC 2 cut(s) 60, 198
AclWI GGATC 1 cut(s) 225
AfaI GTAC 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 1 cut(s) 172
AjiI CACGTC 1 cut(s) 69
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
AlwI GGATC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 240
BccI CCATC 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 201
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
BmcAI AGTACT 1 cut(s) 177
BmgBI CACGTC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 16
Bse21I CCTNAGG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 198
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 2 cut(s) 60, 198
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 16
BspMI ACCTGC 1 cut(s) 201
BspPI GGATC 1 cut(s) 225
BsrI ACTGG 1 cut(s) 16
BssMI GATC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 240
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 3 cut(s) 57, 95, 114
BstUI CGCG 1 cut(s) 198
Bsu36I CCTNAGG 1 cut(s) 240
BtrI CACGTC 1 cut(s) 69
BveI ACCTGC 1 cut(s) 201
CfoI GCGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 176
CviAII CATG 1 cut(s) 246
CviJI RGCY 3 cut(s) 5, 98, 238
CviKI_1 RGCY 3 cut(s) 5, 98, 238
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eco81I CCTNAGG 1 cut(s) 240
FaeI CATG 1 cut(s) 249
FaiI YATR 1 cut(s) 247
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 1 cut(s) 245
Fnu4HI GCNGC 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 61
GlaI GCGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 151
Hin1II CATG 1 cut(s) 249
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 72
Hpy99I CGWCG 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 95, 114
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 1 cut(s) 249
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 217
LpnPI CCDG 2 cut(s) 196, 227
MaeII ACGT 1 cut(s) 68
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MluCI AATT 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 3 cut(s) 124, 130, 249
MseI TTAA 3 cut(s) 27, 33, 77
MspA1I CMGCKG 1 cut(s) 60
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 57, 95, 114
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 249
NlaIV GGNNCC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 16
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SaqAI TTAA 3 cut(s) 27, 33, 77
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 1 cut(s) 217
ScaI AGTACT 1 cut(s) 177
SetI ASST 4 cut(s) 71, 100, 135, 215
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 30
SsiI CCGC 2 cut(s) 60, 198
TaiI ACGT 1 cut(s) 71
TaqI TCGA 2 cut(s) 42, 129
TasI AATT 1 cut(s) 30
TatI WGTACW 1 cut(s) 175
TauI GCSGC 1 cut(s) 63
Tru1I TTAA 3 cut(s) 27, 33, 77
Tru9I TTAA 3 cut(s) 27, 33, 77
ZrmI AGTACT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.