Prupe.1G498400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018526
Physical Location & Seq
Forward (+)
41296717 .. 41297197
481 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G498400.1

Sequence Viewer

Length: 258 bp
ATGGCTGGAACCAATGATATTAAAATTAAAGGGTTCGATTTGAGCAAAAACAGCGGCAACACGTCCGGATTAACCCACTTCGCCAACAGAGCTGACGAGGGCGACAAGGGCGACAATAAAATCGAGGTTGAGGATGCTAAAGCGCAAGATAACAAGGGAAACTTGAAAGTACTGACCGACTTCGCCCAACGTGGTAAGGTGGGCCAGTCGGATCGCCAAGAAATCACGGGGAGCAAGCCACTTCAGACGGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.06

Weight (kDa)

6.56

Isoelectric Point (pI)

18.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 65
AciI CCGC 1 cut(s) 54
AclWI GGATC 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 227
AfaI GTAC 1 cut(s) 171
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 1 cut(s) 166
AjiI CACGTC 1 cut(s) 63
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
AlwI GGATC 1 cut(s) 219
Aor13HI TCCGGA 1 cut(s) 65
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 202
BisI GCNGC 2 cut(s) 55, 252
BlsI GCNGC 2 cut(s) 56, 253
BmcAI AGTACT 1 cut(s) 171
BmgBI CACGTC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 10
BmsI GCATC 1 cut(s) 124
BsaWI WCCGGW 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 205
BseAI TCCGGA 1 cut(s) 65
BseGI GGATG 1 cut(s) 139
BseNI ACTGG 1 cut(s) 205
BshFI GGCC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 66
BsnI GGCC 1 cut(s) 204
Bsp13I TCCGGA 1 cut(s) 65
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 1 cut(s) 54
BspANI GGCC 1 cut(s) 204
BspEI TCCGGA 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 10
BspPI GGATC 1 cut(s) 219
BsrI ACTGG 1 cut(s) 205
BssMI GATC 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 236
BstF5I GGATG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 3 cut(s) 51, 89, 108
BsuRI GGCC 1 cut(s) 204
BtrI CACGTC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 236
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 170
CviAII CATG 1 cut(s) 255
CviJI RGCY 4 cut(s) 5, 92, 204, 238
CviKI_1 RGCY 4 cut(s) 5, 92, 204, 238
CviQI GTAC 1 cut(s) 170
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 227
FaeI CATG 1 cut(s) 258
FaiI YATR 1 cut(s) 256
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 1 cut(s) 254
Fnu4HI GCNGC 2 cut(s) 55, 252
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 55, 252
GlaI GCGC 1 cut(s) 144
GluI GCNGC 2 cut(s) 55, 252
HaeIII GGCC 1 cut(s) 204
HapII CCGG 1 cut(s) 66
HhaI GCGC 1 cut(s) 145
Hin1II CATG 1 cut(s) 258
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HpaII CCGG 1 cut(s) 66
Hpy188I TCNGA 2 cut(s) 211, 246
Hpy188III TCNNGA 1 cut(s) 66
HpyCH4IV ACGT 2 cut(s) 62, 190
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 89, 108
HpySE526I ACGT 2 cut(s) 62, 190
Hsp92II CATG 1 cut(s) 258
HspAI GCGC 1 cut(s) 143
Kpn2I TCCGGA 1 cut(s) 65
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 2 cut(s) 79, 218
LweI GCATC 1 cut(s) 124
MaeII ACGT 2 cut(s) 62, 190
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MluCI AATT 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 3 cut(s) 91, 118, 124
MroI TCCGGA 1 cut(s) 65
MseI TTAA 3 cut(s) 21, 27, 71
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 1 cut(s) 66
MwoI GCNNNNNNNGC 3 cut(s) 51, 89, 108
NdeII GATC 1 cut(s) 211
NlaIII CATG 1 cut(s) 258
NlaIV GGNNCC 1 cut(s) 10
PkrI GCNGC 2 cut(s) 56, 253
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 202
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SaqAI TTAA 3 cut(s) 21, 27, 71
SatI GCNGC 2 cut(s) 55, 252
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 202
ScaI AGTACT 1 cut(s) 171
SetI ASST 5 cut(s) 65, 94, 129, 193, 201
SfaNI GCATC 1 cut(s) 124
Sse9I AATT 1 cut(s) 24
SsiI CCGC 1 cut(s) 54
TaiI ACGT 2 cut(s) 65, 193
TaqI TCGA 2 cut(s) 36, 123
TaqII GACCGA 1 cut(s) 191
TasI AATT 1 cut(s) 24
TatI WGTACW 1 cut(s) 169
TauI GCSGC 1 cut(s) 57
Tru1I TTAA 3 cut(s) 21, 27, 71
Tru9I TTAA 3 cut(s) 21, 27, 71
TseI GCWGC 1 cut(s) 251
ZrmI AGTACT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.