Prupe.1G498800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018526
Physical Location & Seq
Forward (+)
41308014 .. 41308708
695 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G498800.1

Sequence Viewer

Length: 249 bp
ATGGCTGGAACTGGAACCAATGATATTAAAATTAAAGGGTTCGATGTGAGCAACAACAGCGGCAACACGTCGGGATTAACCCACTTCGCCAACAGAGCTGCCGAGGGCGACAAGGGCGACAATAAAATCGAGGTTGAGGATGCTAAAGGGCAAGGGAACACGGGAAACTTGAAAGTACTGACCGACTTCGCCCAACGCGGTAAAGTGGGCCAGTCGGATCGCCAAGAACTTGTCAAACCTCAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.62

Weight (kDa)

6.55

Isoelectric Point (pI)

5.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 198
AciI CCGC 2 cut(s) 60, 198
AclWI GGATC 1 cut(s) 225
AfaI GTAC 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 1 cut(s) 172
AjiI CACGTC 1 cut(s) 69
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
AlwI GGATC 1 cut(s) 225
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 208
AxyI CCTNAGG 1 cut(s) 240
BbvI GCAGC 1 cut(s) 85
BisI GCNGC 2 cut(s) 61, 99
BlsI GCNGC 2 cut(s) 62, 100
BmcAI AGTACT 1 cut(s) 177
BmgBI CACGTC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 102
Bse1I ACTGG 2 cut(s) 16, 211
Bse21I CCTNAGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 145
BseNI ACTGG 2 cut(s) 16, 211
BseXI GCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 210
BsnI GGCC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 2 cut(s) 60, 198
BspANI GGCC 1 cut(s) 210
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 1 cut(s) 225
BsrI ACTGG 2 cut(s) 16, 211
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 198
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 3 cut(s) 57, 95, 114
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 85
Bsu36I CCTNAGG 1 cut(s) 240
BsuRI GGCC 1 cut(s) 210
BtrI CACGTC 1 cut(s) 69
BtsCI GGATG 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 176
CviAII CATG 1 cut(s) 246
CviJI RGCY 3 cut(s) 5, 98, 210
CviKI_1 RGCY 3 cut(s) 5, 98, 210
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eco81I CCTNAGG 1 cut(s) 240
FaeI CATG 1 cut(s) 249
FaiI YATR 1 cut(s) 247
FatI CATG 1 cut(s) 245
Fnu4HI GCNGC 2 cut(s) 61, 99
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 61, 99
GluI GCNGC 2 cut(s) 61, 99
HaeIII GGCC 1 cut(s) 210
Hin1II CATG 1 cut(s) 249
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 72
Hpy99I CGWCG 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 95, 114
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 1 cut(s) 249
Kzo9I GATC 1 cut(s) 217
LpnPI CCDG 2 cut(s) 224, 227
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 130
MaeII ACGT 1 cut(s) 68
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MluCI AATT 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 4 cut(s) 97, 124, 130, 249
MseI TTAA 3 cut(s) 27, 33, 77
MspA1I CMGCKG 1 cut(s) 60
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 57, 95, 114
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 249
NlaIV GGNNCC 1 cut(s) 16
NmeAIII GCCGAG 1 cut(s) 127
PkrI GCNGC 2 cut(s) 62, 100
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 208
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SaqAI TTAA 3 cut(s) 27, 33, 77
SatI GCNGC 2 cut(s) 61, 99
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 208
ScaI AGTACT 1 cut(s) 177
SetI ASST 4 cut(s) 71, 100, 135, 241
SfaNI GCATC 1 cut(s) 130
Sse9I AATT 1 cut(s) 30
SsiI CCGC 2 cut(s) 60, 198
TaiI ACGT 1 cut(s) 71
TaqI TCGA 2 cut(s) 42, 129
TaqII GACCGA 1 cut(s) 197
TasI AATT 1 cut(s) 30
TatI WGTACW 1 cut(s) 175
TauI GCSGC 1 cut(s) 63
Tru1I TTAA 3 cut(s) 27, 33, 77
Tru9I TTAA 3 cut(s) 27, 33, 77
TseI GCWGC 1 cut(s) 98
ZrmI AGTACT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.