Prupe.1G186100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0003950
Physical Location & Seq
Forward (+)
16905014 .. 16906019
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G186100.1

Sequence Viewer

Length: 351 bp
ATGTTAAAAATGGGCGCAGCAGCAGCAAGCAGAGAGAAGCCATTGATGATCCCAAATTCAAATAATTTCTTCTCAGAGTTGGAAGTAAACGCAATAGAGCTTCTCGTACAACTCAGCGGATCGTCGTGCTGCAATGGCGGCAGCACTGAAGAAGAAAGCGATGTCAAAAGCAGAGCAGCTCCGCCTACATTTTTCGCTGAAGACGAAGACGAAGAGGAAGTGAGTTTCGGACCGAGGAAGAAAAGGTTCCGGTCAATTTCGGAACTGTACAAGTTGATAGAGCCTCTTAATCTTGTCATTGTTGCAGCAAAGGAAAATAAGAGAAAGAGGAAGAGGAAGAGGAGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.01

Weight (kDa)

8.6

Isoelectric Point (pI)

72.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 117, 138, 182
AclWI GGATC 2 cut(s) 43, 127
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 2 cut(s) 168, 219
AfaI GTAC 2 cut(s) 108, 269
AgsI TTSAA 1 cut(s) 60
AluBI AGCT 2 cut(s) 100, 179
AluI AGCT 2 cut(s) 100, 179
AlwI GGATC 2 cut(s) 43, 127
ApeKI GCWGC 7 cut(s) 17, 20, 23, 129, 141, 176, 305
ApoI RAATTY 1 cut(s) 55
Asp700I GAANNNNTTC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 230
AvaII GGWCC 1 cut(s) 230
BbsI GAAGAC 2 cut(s) 207, 213
BbvI GCAGC 7 cut(s) 29, 32, 35, 116, 153, 188, 317
BisI GCNGC 8 cut(s) 18, 21, 24, 130, 139, 142, 177, 306
BlsI GCNGC 8 cut(s) 19, 22, 25, 131, 140, 143, 178, 307
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 248
BpiI GAAGAC 2 cut(s) 207, 213
BsaJI CCNNGG 1 cut(s) 233
BsaWI WCCGGW 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 87, 127
BseXI GCAGC 7 cut(s) 29, 32, 35, 116, 153, 188, 317
BsiSI CCGG 1 cut(s) 250
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 2 cut(s) 48, 119
BspACI CCGC 3 cut(s) 117, 138, 182
BspCNI CTCAG 2 cut(s) 86, 126
BspLI GGNNCC 1 cut(s) 248
BspPI GGATC 2 cut(s) 43, 127
BsrDI GCAATG 1 cut(s) 139
BsrGI TGTACA 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 2 cut(s) 48, 119
Bst4CI ACNGT 1 cut(s) 267
Bst6I CTCTTC 3 cut(s) 207, 326, 332
BstAUI TGTACA 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 73, 113
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 2 cut(s) 51, 122
BstMBI GATC 2 cut(s) 48, 119
BstMWI GCNNNNNNNGC 3 cut(s) 23, 135, 138
BstV1I GCAGC 7 cut(s) 29, 32, 35, 116, 153, 188, 317
BstV2I GAAGAC 2 cut(s) 207, 213
BtgZI GCGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 28
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 230
CpoI CGGWCCG 1 cut(s) 230
Csp6I GTAC 2 cut(s) 107, 268
CspI CGGWCCG 1 cut(s) 230
CviJI RGCY 4 cut(s) 40, 100, 179, 283
CviKI_1 RGCY 4 cut(s) 40, 100, 179, 283
CviQI GTAC 2 cut(s) 107, 268
DdeI CTNAG 2 cut(s) 73, 113
DpnI GATC 2 cut(s) 50, 121
DpnII GATC 2 cut(s) 48, 119
Eam1104I CTCTTC 3 cut(s) 207, 326, 332
EarI CTCTTC 3 cut(s) 207, 326, 332
EciI GGCGGA 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 2 cut(s) 168, 219
Fnu4HI GCNGC 8 cut(s) 18, 21, 24, 130, 139, 142, 177, 306
Fsp4HI GCNGC 8 cut(s) 18, 21, 24, 130, 139, 142, 177, 306
GlaI GCGC 1 cut(s) 16
GluI GCNGC 8 cut(s) 18, 21, 24, 130, 139, 142, 177, 306
HapII CCGG 1 cut(s) 250
HhaI GCGC 1 cut(s) 17
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HpaII CCGG 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 4 cut(s) 76, 230, 262, 350
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4V TGCA 2 cut(s) 132, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 135, 138
HpyF3I CTNAG 2 cut(s) 73, 113
HspAI GCGC 1 cut(s) 15
Kzo9I GATC 2 cut(s) 48, 119
LmnI GCTCC 2 cut(s) 184, 342
LpnPI CCDG 1 cut(s) 263
Lsp1109I GCAGC 7 cut(s) 29, 32, 35, 116, 153, 188, 317
MalI GATC 2 cut(s) 50, 121
MboI GATC 2 cut(s) 48, 119
MboII GAAGA 9 cut(s) 61, 161, 164, 212, 218, 224, 250, 343, 349
MluCI AATT 3 cut(s) 55, 64, 255
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 6 cut(s) 208, 228, 294, 321, 327, 333
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 2 cut(s) 5, 288
MspA1I CMGCKG 1 cut(s) 117
MspI CCGG 1 cut(s) 250
MwoI GCNNNNNNNGC 3 cut(s) 23, 135, 138
NdeII GATC 2 cut(s) 48, 119
NlaIV GGNNCC 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 245
PkrI GCNGC 8 cut(s) 19, 22, 25, 131, 140, 143, 178, 307
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 1 cut(s) 230
RsaI GTAC 2 cut(s) 108, 269
RsaNI GTAC 2 cut(s) 107, 268
Rsr2I CGGWCCG 1 cut(s) 230
RsrII CGGWCCG 1 cut(s) 230
SaqAI TTAA 2 cut(s) 5, 288
SatI GCNGC 8 cut(s) 18, 21, 24, 130, 139, 142, 177, 306
Sau3AI GATC 2 cut(s) 48, 119
Sau96I GGNCC 1 cut(s) 230
SetI ASST 3 cut(s) 102, 181, 248
SgeI CNNG 7 cut(s) 39, 116, 138, 246, 262, 283, 305
SinI GGWCC 1 cut(s) 230
Sse9I AATT 3 cut(s) 55, 64, 255
SsiI CCGC 3 cut(s) 117, 138, 182
TaaI ACNGT 1 cut(s) 267
TaqII GACCGA 1 cut(s) 247
TasI AATT 3 cut(s) 55, 64, 255
TatI WGTACW 1 cut(s) 267
TauI GCSGC 1 cut(s) 141
Tru1I TTAA 2 cut(s) 5, 288
Tru9I TTAA 2 cut(s) 5, 288
TscAI CASTG 1 cut(s) 151
TseI GCWGC 7 cut(s) 17, 20, 23, 129, 141, 176, 305
TspRI CASTG 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.