Prupe.1G564700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0003950
Physical Location & Seq
Forward (+)
46118383 .. 46119497
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G564700.1

Sequence Viewer

Length: 363 bp
ATGGCAACAGCAGCAGCAGGAGCAAGCCCAAGCTGCCGCAGCAAGAGCAGAGAGAAGCCATTGATGATCCCAAATTCAATTAATTTCTTCTCAGAGTTGGAAGTGAACGCAATAGAGCTTCTCGTACAACTCAGCGGATCATCGTCCGGCAATGGCGGCAGCACTGAAGAAGAAAGCGATGTCAAAAGCAGAGCAGCTCCTCCTACATTATTCGTTGAAGACGAAGACGAAAACGAAGTGAGTTTCGGACCGAGGAAGAAAGGGTTTCGGTCAATTTCGGAACTGTACAAGTTGACAGAGCCTGTTAATCTTGTTATTGTTGCAGCAAAGGAAAATAAGAGAAAGAGGAAGAGGAGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.06

Weight (kDa)

7.83

Isoelectric Point (pI)

66.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 37, 135, 156
AclWI GGATC 2 cut(s) 61, 145
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 2 cut(s) 126, 287
AgsI TTSAA 2 cut(s) 78, 218
AluBI AGCT 3 cut(s) 33, 118, 197
AluI AGCT 3 cut(s) 33, 118, 197
AlwI GGATC 2 cut(s) 61, 145
AlwNI CAGNNNCTG 1 cut(s) 302
ApeKI GCWGC 7 cut(s) 11, 14, 33, 39, 159, 194, 323
ApoI RAATTY 1 cut(s) 73
AseI ATTAAT 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 248
AvaII GGWCC 1 cut(s) 248
BbsI GAAGAC 2 cut(s) 225, 231
BbvI GCAGC 7 cut(s) 20, 23, 26, 51, 171, 206, 335
BisI GCNGC 9 cut(s) 12, 15, 34, 37, 40, 157, 160, 195, 324
BlsI GCNGC 9 cut(s) 13, 16, 35, 38, 41, 158, 161, 196, 325
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BpiI GAAGAC 2 cut(s) 225, 231
BsaJI CCNNGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 105, 145
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 7 cut(s) 20, 23, 26, 51, 171, 206, 335
BsiSI CCGG 1 cut(s) 147
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 2 cut(s) 66, 137
BspACI CCGC 3 cut(s) 37, 135, 156
BspCNI CTCAG 2 cut(s) 104, 144
BspPI GGATC 2 cut(s) 61, 145
BsrDI GCAATG 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 2 cut(s) 66, 137
Bst4CI ACNGT 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 344
BstAUI TGTACA 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 2 cut(s) 91, 131
BstKTI GATC 2 cut(s) 69, 140
BstMBI GATC 2 cut(s) 66, 137
BstMWI GCNNNNNNNGC 6 cut(s) 11, 20, 33, 39, 45, 156
BstV1I GCAGC 7 cut(s) 20, 23, 26, 51, 171, 206, 335
BstV2I GAAGAC 2 cut(s) 225, 231
BtgZI GCGATG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 25
CaiI CAGNNNCTG 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 248
CpoI CGGWCCG 1 cut(s) 248
Csp6I GTAC 2 cut(s) 125, 286
CspI CGGWCCG 1 cut(s) 248
CviJI RGCY 6 cut(s) 27, 33, 58, 118, 197, 301
CviKI_1 RGCY 6 cut(s) 27, 33, 58, 118, 197, 301
CviQI GTAC 2 cut(s) 125, 286
DdeI CTNAG 2 cut(s) 91, 131
DpnI GATC 2 cut(s) 68, 139
DpnII GATC 2 cut(s) 66, 137
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 186
Fnu4HI GCNGC 9 cut(s) 12, 15, 34, 37, 40, 157, 160, 195, 324
Fsp4HI GCNGC 9 cut(s) 12, 15, 34, 37, 40, 157, 160, 195, 324
GluI GCNGC 9 cut(s) 12, 15, 34, 37, 40, 157, 160, 195, 324
HapII CCGG 1 cut(s) 147
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HpaII CCGG 1 cut(s) 147
Hpy166II GTNNAC 2 cut(s) 106, 294
Hpy188I TCNGA 3 cut(s) 94, 248, 280
Hpy8I GTNNAC 2 cut(s) 106, 294
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 20, 33, 39, 45, 156
HpyF3I CTNAG 2 cut(s) 91, 131
Kzo9I GATC 2 cut(s) 66, 137
LmnI GCTCC 3 cut(s) 20, 202, 354
LpnPI CCDG 3 cut(s) 3, 160, 315
Lsp1109I GCAGC 7 cut(s) 20, 23, 26, 51, 171, 206, 335
MalI GATC 2 cut(s) 68, 139
MboI GATC 2 cut(s) 66, 137
MboII GAAGA 7 cut(s) 79, 179, 182, 230, 236, 268, 361
MluCI AATT 4 cut(s) 73, 78, 82, 273
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 4 cut(s) 210, 246, 339, 345
MseI TTAA 2 cut(s) 81, 306
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 1 cut(s) 147
MwoI GCNNNNNNNGC 6 cut(s) 11, 20, 33, 39, 45, 156
NdeII GATC 2 cut(s) 66, 137
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PkrI GCNGC 9 cut(s) 13, 16, 35, 38, 41, 158, 161, 196, 325
PshBI ATTAAT 1 cut(s) 81
PspPI GGNCC 1 cut(s) 248
PstNI CAGNNNCTG 1 cut(s) 302
RsaI GTAC 2 cut(s) 126, 287
RsaNI GTAC 2 cut(s) 125, 286
Rsr2I CGGWCCG 1 cut(s) 248
RsrII CGGWCCG 1 cut(s) 248
SaqAI TTAA 2 cut(s) 81, 306
SatI GCNGC 9 cut(s) 12, 15, 34, 37, 40, 157, 160, 195, 324
Sau3AI GATC 2 cut(s) 66, 137
Sau96I GGNCC 1 cut(s) 248
SetI ASST 3 cut(s) 35, 120, 199
SinI GGWCC 1 cut(s) 248
Sse9I AATT 4 cut(s) 73, 78, 82, 273
SsiI CCGC 3 cut(s) 37, 135, 156
TaaI ACNGT 1 cut(s) 285
TaqII GACCGA 2 cut(s) 258, 265
TasI AATT 4 cut(s) 73, 78, 82, 273
TatI WGTACW 1 cut(s) 285
TauI GCSGC 2 cut(s) 39, 159
Tru1I TTAA 2 cut(s) 81, 306
Tru9I TTAA 2 cut(s) 81, 306
TscAI CASTG 1 cut(s) 169
TseI GCWGC 7 cut(s) 11, 14, 33, 39, 159, 194, 323
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 248
VspI ATTAAT 1 cut(s) 81
XapI RAATTY 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.