Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003950

Physical Location & Seq

Genomic Coordinates Forward (+)

46116410 .. 46117030

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G564600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGATCTCGAATTCAATTAATTTCTTCTCAGAGTTGGAAGTAAATGCAATAGAGCTTCTCGTGCAACTCAGCGGATCATCGTGCTACAACGGCGGCAGCACTGAAGAAGAAACCGATGGCAAAAGCAGAGCACCTCCTCCTCCTCGGCCTCGGCCTTCGTCGTCGTCCTTCAAATACGAAACATTATCTGAAGATGGAGGCGAAGAGGAAGATGTATTGAGTTTCGGACAGAGGAAGAAAAAATTTCGGTCAATTTCGGATCTGTACAAACAAGTTGACAGAGCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.64

Weight (kDa)

4.83

Isoelectric Point (pI)

63.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29760
prunus_persica	Prupe.1G186100_v2.0.a1 Prupe.1G564600_v2.0.a1 Prupe.1G564700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0223261 RchiOBHm_Chr7g0223271
rosa_laevigata	RLG00000001992 RLG00000001993 RLG00000001995 RLG00000001996
rosa_roxburghii	Rroxscaffold_3G00235970 Rroxscaffold_3G00235980 Rroxscaffold_3G00235990 Rroxscaffold_3G00236000
rosa_rugosa	Rorug07G0213800 Rorug07G0213800 Rorug07G0213800 Rorug07G0213800
rosa_samantha	Rh7AG358900 Rh7AG359000 Rh7AG359100 Rh7AG359200 Rh7BG346800 Rh7BG346900 Rh7BG347100 Rh7BG347200 Rh7CG377300 Rh7CG377400 Rh7CG377600 Rh7CG377700 Rh7DG354300 Rh7DG354400 Rh7DG354500 Rh7DG354700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 93
AclWI	GGATC	2 cut(s)	82, 267
AcsI	RAATTY	2 cut(s)	10, 242
AcuI	CTGAAG	2 cut(s)	123, 210
AfaI	GTAC	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	15, 172
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw21I	GWGCWC	1 cut(s)	133
AlwI	GGATC	2 cut(s)	82, 267
AoxI	GGCC	2 cut(s)	146, 152
ApeKI	GCWGC	1 cut(s)	96
ApoI	RAATTY	2 cut(s)	10, 242
AseI	ATTAAT	1 cut(s)	18
BauI	CACGAG	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	2 cut(s)	110, 188
BceAI	ACGGC	1 cut(s)	106
BisI	GCNGC	2 cut(s)	94, 97
BlsI	GCNGC	2 cut(s)	95, 98
BsaJI	CCNNGG	2 cut(s)	143, 149
BseDI	CCNNGG	2 cut(s)	143, 149
BseMII	CTCAG	2 cut(s)	42, 82
BseRI	GAGGAG	3 cut(s)	126, 129, 132
BseXI	GCAGC	1 cut(s)	108
BshFI	GGCC	2 cut(s)	148, 154
BsiHKAI	GWGCWC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	148, 154
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	3 cut(s)	3, 74, 259
BspACI	CCGC	2 cut(s)	72, 93
BspANI	GGCC	2 cut(s)	148, 154
BspCNI	CTCAG	2 cut(s)	41, 81
BspPI	GGATC	2 cut(s)	82, 267
BsrGI	TGTACA	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	143, 149
BssMI	GATC	3 cut(s)	3, 74, 259
BssSI	CACGAG	1 cut(s)	59
Bst2BI	CACGAG	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	28, 68
BstKTI	GATC	3 cut(s)	6, 77, 262
BstMBI	GATC	3 cut(s)	3, 74, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 90
BstV1I	GCAGC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	148, 154
BtsIMutI	CAGTG	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	265
CviJI	RGCY	4 cut(s)	55, 148, 154, 284
CviKI_1	RGCY	4 cut(s)	55, 148, 154, 284
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	28, 68
DpnI	GATC	3 cut(s)	5, 76, 261
DpnII	GATC	3 cut(s)	3, 74, 259
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco57I	CTGAAG	2 cut(s)	123, 210
EcoRI	GAATTC	1 cut(s)	10
Fnu4HI	GCNGC	2 cut(s)	94, 97
Fsp4HI	GCNGC	2 cut(s)	94, 97
GluI	GCNGC	2 cut(s)	94, 97
HaeIII	GGCC	2 cut(s)	148, 154
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	4 cut(s)	31, 190, 227, 259
Hpy188III	TCNNGA	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	2 cut(s)	163, 166
HpyAV	CCTTC	2 cut(s)	165, 178
HpyCH4V	TGCA	2 cut(s)	47, 64
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 90
HpyF3I	CTNAG	2 cut(s)	28, 68
Kzo9I	GATC	3 cut(s)	3, 74, 259
Lsp1109I	GCAGC	1 cut(s)	108
MalI	GATC	3 cut(s)	5, 76, 261
MboI	GATC	3 cut(s)	3, 74, 259
MboII	GAAGA	7 cut(s)	16, 116, 119, 203, 215, 221, 247
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	5 cut(s)	10, 15, 19, 242, 252
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	8 cut(s)	144, 147, 150, 153, 159, 191, 199, 225
MseI	TTAA	2 cut(s)	18, 289
MspA1I	CMGCKG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	61, 90
NdeII	GATC	3 cut(s)	3, 74, 259
NmeAIII	GCCGAG	2 cut(s)	124, 130
PkrI	GCNGC	2 cut(s)	95, 98
PshBI	ATTAAT	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SaqAI	TTAA	2 cut(s)	18, 289
SatI	GCNGC	2 cut(s)	94, 97
Sau3AI	GATC	3 cut(s)	3, 74, 259
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	2 cut(s)	57, 136
SgeI	CNNG	7 cut(s)	19, 71, 73, 93, 156, 162, 284
Sse9I	AATT	5 cut(s)	10, 15, 19, 242, 252
SsiI	CCGC	2 cut(s)	72, 93
TaqI	TCGA	1 cut(s)	8
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	5 cut(s)	10, 15, 19, 242, 252
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	1 cut(s)	96
Tru1I	TTAA	2 cut(s)	18, 289
Tru9I	TTAA	2 cut(s)	18, 289
TscAI	CASTG	1 cut(s)	106
TseI	GCWGC	1 cut(s)	96
TspRI	CASTG	1 cut(s)	106
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	2 cut(s)	10, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.