RchiOBHm_Chr7g0223261

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
44907165 .. 44907601
437 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19990

Sequence Viewer

Length: 333 bp
ATGGCGAAATCAGCAGCAGCAGCAGGCAGGAAGAGGAAGAGTTCAAGTGTTTCGGACGCGGAAATAATAGACGCAGCAAATCTGCTCATACAACTCAGCGGAAGCTCCGATACGATTTATTACGGCGCTGAAGAAGAAAGCGTTGGTAAAACAACGCCAACTGCTCATCTCGATGATCATGATCAGGTGTCTTCTTCTCCCTTTAAATATAGAGTGTTTGAAGAAGAAGATGAAGATGAATTGGGTTTCGGTAAGCGAATCGAGAAGAAACGATCTCGCTTGATTTCGGATCTGTACGAGCAGACGAAGCCTCTCAAAAGGAGGATGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.28

Weight (kDa)

5.72

Isoelectric Point (pI)

62.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 59
AciI CCGC 2 cut(s) 59, 99
AclWI GGATC 1 cut(s) 297
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 1 cut(s) 296
AgsI TTSAA 2 cut(s) 45, 221
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
AlwI GGATC 1 cut(s) 297
ApeKI GCWGC 4 cut(s) 14, 17, 20, 74
AspLEI GCGC 1 cut(s) 128
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 4 cut(s) 26, 29, 32, 86
BccI CCATC 1 cut(s) 319
BceAI ACGGC 1 cut(s) 139
BclI TGATCA 2 cut(s) 175, 181
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 4 cut(s) 15, 18, 21, 75
BlsI GCNGC 4 cut(s) 16, 19, 22, 76
BpiI GAAGAC 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 180
BseGI GGATG 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 180
BseMII CTCAG 1 cut(s) 109
BseXI GCAGC 4 cut(s) 26, 29, 32, 86
Bsh1236I CGCG 1 cut(s) 59
Bsp143I GATC 4 cut(s) 175, 181, 272, 289
BspACI CCGC 2 cut(s) 59, 99
BspCNI CTCAG 1 cut(s) 108
BspFNI CGCG 1 cut(s) 59
BspHI TCATGA 1 cut(s) 178
BspPI GGATC 1 cut(s) 297
BssMI GATC 4 cut(s) 175, 181, 272, 289
Bst6I CTCTTC 2 cut(s) 26, 32
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 4 cut(s) 178, 184, 275, 292
BstMBI GATC 4 cut(s) 175, 181, 272, 289
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 307
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 4 cut(s) 26, 29, 32, 86
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BtsCI GGATG 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 25
CciI TCATGA 1 cut(s) 178
CfoI GCGC 1 cut(s) 128
CseI GACGC 2 cut(s) 65, 80
Csp6I GTAC 1 cut(s) 295
CviAII CATG 1 cut(s) 179
CviJI RGCY 2 cut(s) 105, 310
CviKI_1 RGCY 2 cut(s) 105, 310
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 95
DpnI GATC 4 cut(s) 177, 183, 274, 291
DpnII GATC 4 cut(s) 175, 181, 272, 289
DraI TTTAAA 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 26, 32
EarI CTCTTC 2 cut(s) 26, 32
Eco57I CTGAAG 1 cut(s) 150
FaeI CATG 1 cut(s) 182
FaiI YATR 3 cut(s) 89, 180, 210
FatI CATG 1 cut(s) 178
FbaI TGATCA 2 cut(s) 175, 181
Fnu4HI GCNGC 4 cut(s) 15, 18, 21, 75
Fsp4HI GCNGC 4 cut(s) 15, 18, 21, 75
GlaI GCGC 1 cut(s) 127
GluI GCNGC 4 cut(s) 15, 18, 21, 75
HaeII RGCGCY 1 cut(s) 129
HgaI GACGC 2 cut(s) 65, 80
HhaI GCGC 1 cut(s) 128
Hin1II CATG 1 cut(s) 182
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 1 cut(s) 258
Hpy188I TCNGA 3 cut(s) 55, 109, 289
Hpy188III TCNNGA 3 cut(s) 170, 179, 262
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 307
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 1 cut(s) 182
HspAI GCGC 1 cut(s) 126
Ksp22I TGATCA 2 cut(s) 175, 181
Kzo9I GATC 4 cut(s) 175, 181, 272, 289
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 3 cut(s) 9, 13, 170
Lsp1109I GCAGC 4 cut(s) 26, 29, 32, 86
MalI GATC 4 cut(s) 177, 183, 274, 291
MboI GATC 4 cut(s) 175, 181, 272, 289
MflI RGATCY 1 cut(s) 289
MluCI AATT 1 cut(s) 239
MnlI CCTC 3 cut(s) 27, 315, 321
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 99
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 307
NdeII GATC 4 cut(s) 175, 181, 272, 289
NlaIII CATG 1 cut(s) 182
PagI TCATGA 1 cut(s) 178
PfeI GAWTC 1 cut(s) 258
PkrI GCNGC 4 cut(s) 16, 19, 22, 76
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 4 cut(s) 15, 18, 21, 75
Sau3AI GATC 4 cut(s) 175, 181, 272, 289
SetI ASST 2 cut(s) 107, 189
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 1 cut(s) 239
SsiI CCGC 2 cut(s) 59, 99
TaqI TCGA 2 cut(s) 171, 261
TasI AATT 1 cut(s) 239
TfiI GAWTC 1 cut(s) 258
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseI GCWGC 4 cut(s) 14, 17, 20, 74
TspDTI ATGAA 2 cut(s) 246, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.