Rroxscaffold_3G00235980

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
23213152 .. 23213659
508 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00235980.1

Sequence Viewer

Length: 357 bp
ATGGCGAAATCAGCAGCAGCAGGCATGAAGAGGAACAGTTCGAGTGTTTCGGACACGGAAATAATAGACGCAGCAAATCTGCTCATACAACTCAGCGCAAGCTCCGATAAGATTTACTACGGCGCTGAAGAAGAAAGCGTTGGTAAAACAACGCCAACTGCTCATCACGATGATCACGATCAGGTGTCTTCTTCTCCCTTTAAATATAGAGTGTTTGAAGAGGAAGATGAAGATGAAGTGGGTTTCGGTAAGCCAATTGAGAAGAAACGATTTCGCTTGATTTCGTATCTGTACGAGCAAACGAAGCCTCTCAAAAATGGTGGTGTTGTAAATAGAAGGAAAAGGAGGATGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.28

Weight (kDa)

6.84

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 293
AgsI TTSAA 1 cut(s) 218
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
ApeKI GCWGC 3 cut(s) 14, 17, 71
AspLEI GCGC 2 cut(s) 98, 125
BbsI GAAGAC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 26, 29, 83
BccI CCATC 1 cut(s) 343
BceAI ACGGC 1 cut(s) 136
BclI TGATCA 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 126
BisI GCNGC 3 cut(s) 15, 18, 72
BlsI GCNGC 3 cut(s) 16, 19, 73
BpiI GAAGAC 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 177
Bse8I GATNNNNATC 1 cut(s) 177
BseGI GGATG 1 cut(s) 354
BseJI GATNNNNATC 1 cut(s) 177
BseMII CTCAG 1 cut(s) 106
BseXI GCAGC 3 cut(s) 26, 29, 83
Bsp143I GATC 2 cut(s) 172, 178
BspCNI CTCAG 1 cut(s) 105
BssMI GATC 2 cut(s) 172, 178
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 2 cut(s) 23, 213
BstC8I GCNNGC 2 cut(s) 22, 100
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 354
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 2 cut(s) 98, 125
BstKTI GATC 2 cut(s) 175, 181
BstMBI GATC 2 cut(s) 172, 178
BstMWI GCNNNNNNNGC 2 cut(s) 11, 304
BstV1I GCAGC 3 cut(s) 26, 29, 83
BstV2I GAAGAC 1 cut(s) 180
BtsCI GGATG 1 cut(s) 354
Cac8I GCNNGC 2 cut(s) 22, 100
CfoI GCGC 2 cut(s) 98, 125
CseI GACGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 292
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 1 cut(s) 25
CviJI RGCY 3 cut(s) 102, 253, 307
CviKI_1 RGCY 3 cut(s) 102, 253, 307
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 1 cut(s) 92
DpnI GATC 2 cut(s) 174, 180
DpnII GATC 2 cut(s) 172, 178
DraI TTTAAA 1 cut(s) 202
Eam1104I CTCTTC 2 cut(s) 23, 213
EarI CTCTTC 2 cut(s) 23, 213
Eco57I CTGAAG 1 cut(s) 147
FaeI CATG 1 cut(s) 28
FaiI YATR 3 cut(s) 26, 86, 207
FatI CATG 1 cut(s) 24
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 3 cut(s) 15, 18, 72
Fsp4HI GCNGC 3 cut(s) 15, 18, 72
GlaI GCGC 2 cut(s) 97, 124
GluI GCNGC 3 cut(s) 15, 18, 72
HaeII RGCGCY 1 cut(s) 126
HgaI GACGC 1 cut(s) 77
HhaI GCGC 2 cut(s) 98, 125
Hin1II CATG 1 cut(s) 28
Hin6I GCGC 2 cut(s) 96, 123
HinP1I GCGC 2 cut(s) 96, 123
Hpy188I TCNGA 2 cut(s) 52, 106
Hpy188III TCNNGA 2 cut(s) 167, 176
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 304
HpyF3I CTNAG 1 cut(s) 92
Hsp92II CATG 1 cut(s) 28
HspAI GCGC 2 cut(s) 96, 123
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 2 cut(s) 172, 178
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 2 cut(s) 6, 167
Lsp1109I GCAGC 3 cut(s) 26, 29, 83
MalI GATC 2 cut(s) 174, 180
MboI GATC 2 cut(s) 172, 178
MboII GAAGA 9 cut(s) 40, 140, 143, 180, 183, 230, 236, 242, 274
MfeI CAATTG 1 cut(s) 255
MluCI AATT 1 cut(s) 255
MnlI CCTC 4 cut(s) 24, 214, 318, 339
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 168
MunI CAATTG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 11, 304
NdeII GATC 2 cut(s) 172, 178
NlaIII CATG 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PkrI GCNGC 3 cut(s) 16, 19, 73
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 3 cut(s) 15, 18, 72
Sau3AI GATC 2 cut(s) 172, 178
SetI ASST 2 cut(s) 104, 186
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 1 cut(s) 255
TaaI ACNGT 1 cut(s) 38
TaqI TCGA 1 cut(s) 41
TasI AATT 1 cut(s) 255
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseI GCWGC 3 cut(s) 14, 17, 71
TspDTI ATGAA 3 cut(s) 41, 243, 249
TspGWI ACGGA 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.