Rorug07G0213800

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003950
Physical Location & Seq
Forward (+)
18907336 .. 18912784
5449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0213800.1

Sequence Viewer

Length: 1176 bp
ATGCTGTGCTTTCAGGATAAGAAGATGCTGAGTTCCACCCAACGCTTGATTGCATTTGCTTTACTTCATCAGGCTCATGCTTCCCAGAAACCTTCCTCGAATCCGTTCATAAATTTGATTATAAGTGCTGCATGCGATGTTGAAGCTGAAAAATGTGAGAGGGCATTTGTTCTGCAGCTATTACAACTATCCGGGTCTGATGGCTCTAATAGTGGCAAAGAGCTTCTTAAACAGTCCGCGGCAGATTACATTAAAAATTTTGATTCTTCGATGCATGTCTTCCCGCAACAGGAACATCTGCAGCAGCAGTATGCAGATAAAGTCCATCCAGAACCATATAGTTCTCCATTCAAGGATGGTTCTATCAAAAATGTGGTAGTGGACCCTGATCTTCCTTCTGGTTGTGATACCAACTCATCAGAGTTTGATCTACAACCTGGAGCAAAACCTAAAGTCGGTGCTGGAGATAAAGACGAGACGGTGCTTGGCTTGCTGTCCAATCTAGCGCTGGAAGGATTAGGTCCTCACTGGAGTAGGCCTATTCCTCCGAGACTTCCAGTTCAGGACGATGAACTAGTGTGGCTCAACCCAGTTGACAATCATGAACTTTTATGGGATGATGGTATGTGTGTTGATACCAGCAGAGGTGCAGCTGTAAGGGACTTGATTGCTAAAGCTTTGAAGGGACCACTTGTGCCTGCACAACAAGAGCAAGTCTTGATGGAGTTGACAAATGACCCGAAACTTGTATATCACTGTGGGCTGACACCAAGAAAGCTGCCGGAACTGGTGGAAAATAATCCCCTAATTGCAGTTGAAGTTCTCACCAAGTTGATAAACTCCCCTGAAATTGCAGAATATTTTACAGTGCTCGTCAATATGGACATGAGTCTACACTCCATGGAAGTTGTGAACCGGCTTACGACAGCCGTTGAACTTCCTTCTGAGTTCATACATATGTACATAACCAATTGTATATCTTCGTGTGAGAACATCAAGGACAAGTACATGCAGAACAGACTTGTGAGGCTTGTTTGTGTATTTCTGCAGAGCCTTATCCGAAACAACATTATAAATGTTAAGGATCTTTTCATTGAAGTTCAAGCTTTTTGCATTGAGTTCTCCCGAATTAGAGAAGCAGCTGCACTCTTTAGGCTCCTAAAATCCTTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

391

Amino Acids

43.69

Weight (kDa)

5.22

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNOT11 PF10155 264 - 388 7.1e-54 CCR4-NOT transcription complex subunit 11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 122, 1073
AccI GTMKAC 1 cut(s) 892
AccII CGCG 1 cut(s) 239
AciI CCGC 3 cut(s) 237, 239, 284
AclWI GGATC 1 cut(s) 1092
AcsI RAATTY 2 cut(s) 112, 256
AfaI GTAC 2 cut(s) 962, 1007
AfeI AGCGCT 1 cut(s) 507
AfiI CCNNNNNNNGG 2 cut(s) 289, 455
AgsI TTSAA 7 cut(s) 143, 352, 682, 818, 935, 1097, 1103
AhlI ACTAGT 1 cut(s) 574
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 8 cut(s) 146, 178, 223, 653, 677, 778, 1106, 1142
AluI AGCT 8 cut(s) 146, 178, 223, 653, 677, 778, 1106, 1142
Alw21I GWGCWC 1 cut(s) 873
Alw26I GTCTC 2 cut(s) 470, 544
AlwI GGATC 1 cut(s) 1092
Aor51HI AGCGCT 1 cut(s) 507
AoxI GGCC 1 cut(s) 536
ApeKI GCWGC 8 cut(s) 128, 175, 301, 304, 650, 778, 1139, 1142
ApoI RAATTY 2 cut(s) 112, 256
Asp700I GAANNNNTTC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 3 cut(s) 382, 521, 686
AsuC2I CCSGG 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 817
AvaII GGWCC 3 cut(s) 382, 521, 686
BbsI GAAGAC 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 873
BbvI GCAGC 8 cut(s) 115, 187, 313, 316, 662, 765, 1129, 1151
BccI CCATC 5 cut(s) 194, 333, 350, 614, 715
BceAI ACGGC 1 cut(s) 914
BciT130I CCWGG 1 cut(s) 438
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 2 cut(s) 470, 544
BcuI ACTAGT 1 cut(s) 574
BfaI CTAG 2 cut(s) 503, 575
BfmI CTRYAG 3 cut(s) 173, 299, 1046
BfoI RGCGCY 1 cut(s) 509
BisI GCNGC 9 cut(s) 129, 176, 240, 302, 305, 651, 779, 1140, 1143
BlsI GCNGC 9 cut(s) 130, 177, 241, 303, 306, 652, 780, 1141, 1144
Bme1390I CCNGG 2 cut(s) 193, 438
Bme18I GGWCC 3 cut(s) 382, 521, 686
BmgT120I GGNCC 3 cut(s) 382, 521, 686
BmiI GGNNCC 3 cut(s) 384, 687, 1157
BmrFI CCNGG 2 cut(s) 193, 438
BmrI ACTGGG 1 cut(s) 584
BmsI GCATC 2 cut(s) 15, 261
BmuI ACTGGG 1 cut(s) 584
BoxI GACNNNNGTC 1 cut(s) 888
BpiI GAAGAC 1 cut(s) 271
BpmI CTGGAG 3 cut(s) 459, 483, 550
BpuMI CCSGG 1 cut(s) 193
BsaJI CCNNGG 3 cut(s) 237, 900, 1167
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 455
Bse118I RCCGGY 1 cut(s) 915
Bse1I ACTGG 4 cut(s) 533, 557, 590, 792
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 3 cut(s) 237, 900, 1167
BseGI GGATG 3 cut(s) 325, 361, 622
BseLI CCNNNNNNNGG 2 cut(s) 289, 455
BseMII CTCAG 2 cut(s) 20, 936
BseNI ACTGG 4 cut(s) 533, 557, 590, 792
BseXI GCAGC 8 cut(s) 115, 187, 313, 316, 662, 765, 1129, 1151
BsgI GTGCAG 3 cut(s) 669, 684, 1128
Bsh1236I CGCG 1 cut(s) 239
BshFI GGCC 1 cut(s) 538
BsiHKAI GWGCWC 1 cut(s) 873
BsiSI CCGG 3 cut(s) 192, 782, 916
BslFI GGGAC 2 cut(s) 674, 699
BslI CCNNNNNNNGG 2 cut(s) 289, 455
BsmAI GTCTC 2 cut(s) 470, 544
BsmBI CGTCTC 1 cut(s) 470
BsmFI GGGAC 2 cut(s) 674, 699
BsnI GGCC 1 cut(s) 538
Bsp1286I GDGCHC 1 cut(s) 873
Bsp1407I TGTACA 1 cut(s) 960
Bsp143I GATC 3 cut(s) 388, 427, 1084
Bsp19I CCATGG 1 cut(s) 900
BspACI CCGC 3 cut(s) 237, 239, 284
BspANI GGCC 1 cut(s) 538
BspCNI CTCAG 2 cut(s) 21, 937
BspFNI CGCG 1 cut(s) 239
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 3 cut(s) 384, 687, 1157
BspMAI CTGCAG 3 cut(s) 177, 303, 1050
BspPI GGATC 1 cut(s) 1092
BsrFI RCCGGY 1 cut(s) 915
BsrGI TGTACA 1 cut(s) 960
BsrI ACTGG 4 cut(s) 533, 557, 590, 792
BssAI RCCGGY 1 cut(s) 915
BssECI CCNNGG 3 cut(s) 237, 900, 1167
BssMI GATC 3 cut(s) 388, 427, 1084
BssT1I CCWWGG 2 cut(s) 900, 1167
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 4 cut(s) 234, 481, 758, 868
BstAUI TGTACA 1 cut(s) 960
BstC8I GCNNGC 3 cut(s) 133, 491, 699
BstDEI CTNAG 2 cut(s) 29, 945
BstDSI CCRYGG 2 cut(s) 237, 900
BstF5I GGATG 3 cut(s) 325, 361, 622
BstFNI CGCG 1 cut(s) 239
BstH2I RGCGCY 1 cut(s) 509
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 3 cut(s) 391, 430, 1087
BstMAI GTCTC 2 cut(s) 470, 544
BstMBI GATC 3 cut(s) 388, 427, 1084
BstMWI GCNNNNNNNGC 1 cut(s) 490
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 3 cut(s) 135, 278, 1012
BstPAI GACNNNNGTC 1 cut(s) 888
BstSCI CCNGG 2 cut(s) 191, 436
BstSFI CTRYAG 3 cut(s) 173, 299, 1046
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 8 cut(s) 115, 187, 313, 316, 662, 765, 1129, 1151
BstV2I GAAGAC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 1084
BstYI RGATCY 1 cut(s) 1084
BsuRI GGCC 1 cut(s) 538
BtgI CCRYGG 2 cut(s) 237, 900
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 3 cut(s) 325, 361, 622
BtsIMutI CAGTG 3 cut(s) 526, 754, 873
Cac8I GCNNGC 3 cut(s) 133, 491, 699
CciI TCATGA 1 cut(s) 601
CfoI GCGC 1 cut(s) 508
Cfr10I RCCGGY 1 cut(s) 915
Cfr13I GGNCC 3 cut(s) 382, 521, 686
Cfr42I CCGCGG 1 cut(s) 240
Csp6I GTAC 2 cut(s) 961, 1006
CviAII CATG 7 cut(s) 77, 132, 275, 602, 886, 901, 1009
CviQI GTAC 2 cut(s) 961, 1006
DdeI CTNAG 2 cut(s) 29, 945
DpnI GATC 3 cut(s) 390, 429, 1086
DpnII GATC 3 cut(s) 388, 427, 1084
Eco130I CCWWGG 2 cut(s) 900, 1167
Eco147I AGGCCT 1 cut(s) 538
Eco47I GGWCC 3 cut(s) 382, 521, 686
Eco47III AGCGCT 1 cut(s) 507
EcoO109I RGGNCCY 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 2 cut(s) 900, 1167
EcoT22I ATGCAT 1 cut(s) 276
ErhI CCWWGG 2 cut(s) 900, 1167
Esp3I CGTCTC 1 cut(s) 470
FaeI CATG 7 cut(s) 80, 135, 278, 605, 889, 904, 1012
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FaqI GGGAC 2 cut(s) 674, 699
FatI CATG 7 cut(s) 76, 131, 274, 601, 885, 900, 1008
FauI CCCGC 1 cut(s) 291
FauNDI CATATG 1 cut(s) 957
FblI GTMKAC 1 cut(s) 892
Fnu4HI GCNGC 9 cut(s) 129, 176, 240, 302, 305, 651, 779, 1140, 1143
FokI GGATG 3 cut(s) 312, 368, 629
Fsp4HI GCNGC 9 cut(s) 129, 176, 240, 302, 305, 651, 779, 1140, 1143
FspBI CTAG 2 cut(s) 503, 575
GlaI GCGC 1 cut(s) 507
GluI GCNGC 9 cut(s) 129, 176, 240, 302, 305, 651, 779, 1140, 1143
GsuI CTGGAG 3 cut(s) 459, 483, 550
HaeII RGCGCY 1 cut(s) 509
HaeIII GGCC 1 cut(s) 538
HapII CCGG 3 cut(s) 192, 782, 916
HhaI GCGC 1 cut(s) 508
Hin1II CATG 7 cut(s) 80, 135, 278, 605, 889, 904, 1012
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 2 cut(s) 595, 729
HindII GTYRAC 2 cut(s) 595, 729
HindIII AAGCTT 2 cut(s) 675, 1104
HinfI GANTC 3 cut(s) 100, 263, 889
HpaII CCGG 3 cut(s) 192, 782, 916
HphI GGTGA 1 cut(s) 817
Hpy166II GTNNAC 5 cut(s) 382, 595, 729, 893, 913
Hpy188I TCNGA 5 cut(s) 199, 421, 549, 946, 1061
Hpy188III TCNNGA 6 cut(s) 14, 329, 563, 602, 718, 1125
Hpy8I GTNNAC 5 cut(s) 382, 595, 729, 893, 913
HpyAV CCTTC 5 cut(s) 102, 405, 506, 676, 951
HpyCH4III ACNGT 4 cut(s) 234, 481, 758, 868
HpyF10VI GCNNNNNNNGC 1 cut(s) 490
HpyF3I CTNAG 2 cut(s) 29, 945
Hsp92II CATG 7 cut(s) 80, 135, 278, 605, 889, 904, 1012
HspAI GCGC 1 cut(s) 506
KspI CCGCGG 1 cut(s) 240
Kzo9I GATC 3 cut(s) 388, 427, 1084
LmnI GCTCC 2 cut(s) 440, 1161
Lsp1109I GCAGC 8 cut(s) 115, 187, 313, 316, 662, 765, 1129, 1151
LweI GCATC 2 cut(s) 15, 261
MaeI CTAG 2 cut(s) 503, 575
MalI GATC 3 cut(s) 390, 429, 1086
MboI GATC 3 cut(s) 388, 427, 1084
MboII GAAGA 5 cut(s) 34, 258, 271, 383, 972
MfeI CAATTG 1 cut(s) 970
MflI RGATCY 1 cut(s) 1084
MhlI GDGCHC 1 cut(s) 873
MluCI AATT 6 cut(s) 112, 256, 807, 849, 970, 1128
MlyI GAGTC 1 cut(s) 898
MnlI CCTC 6 cut(s) 106, 153, 534, 555, 638, 1020
Mph1103I ATGCAT 1 cut(s) 276
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 3 cut(s) 228, 252, 1080
MslI CAYNNNNRTG 1 cut(s) 956
MspA1I CMGCKG 3 cut(s) 239, 653, 1142
MspI CCGG 3 cut(s) 192, 782, 916
MspR9I CCNGG 2 cut(s) 193, 438
MunI CAATTG 1 cut(s) 970
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 490
NciI CCSGG 1 cut(s) 193
NcoI CCATGG 1 cut(s) 900
NdeI CATATG 1 cut(s) 957
NdeII GATC 3 cut(s) 388, 427, 1084
NlaIII CATG 7 cut(s) 80, 135, 278, 605, 889, 904, 1012
NlaIV GGNNCC 3 cut(s) 384, 687, 1157
NsiI ATGCAT 1 cut(s) 276
NspI RCATGY 3 cut(s) 135, 278, 1012
PaeI GCATGC 1 cut(s) 135
PagI TCATGA 1 cut(s) 601
PceI AGGCCT 1 cut(s) 538
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 2 cut(s) 100, 263
PkrI GCNGC 9 cut(s) 130, 177, 241, 303, 306, 652, 780, 1141, 1144
PleI GAGTC 1 cut(s) 897
PpsI GAGTC 1 cut(s) 897
PpuMI RGGWCCY 1 cut(s) 521
PshAI GACNNNNGTC 1 cut(s) 888
PsiI TTATAA 2 cut(s) 122, 1073
Psp5II RGGWCCY 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 3 cut(s) 384, 687, 1157
PspPI GGNCC 3 cut(s) 382, 521, 686
PspPPI RGGWCCY 1 cut(s) 521
PstI CTGCAG 3 cut(s) 177, 303, 1050
PsuI RGATCY 1 cut(s) 1084
PvuII CAGCTG 2 cut(s) 653, 1142
RsaI GTAC 2 cut(s) 962, 1007
RsaNI GTAC 2 cut(s) 961, 1006
RseI CAYNNNNRTG 1 cut(s) 956
SacII CCGCGG 1 cut(s) 240
SaqAI TTAA 3 cut(s) 228, 252, 1080
SatI GCNGC 9 cut(s) 129, 176, 240, 302, 305, 651, 779, 1140, 1143
Sau3AI GATC 3 cut(s) 388, 427, 1084
Sau96I GGNCC 3 cut(s) 382, 521, 686
SchI GAGTC 1 cut(s) 898
ScrFI CCNGG 2 cut(s) 193, 438
SduI GDGCHC 1 cut(s) 873
SfaNI GCATC 2 cut(s) 15, 261
SfcI CTRYAG 3 cut(s) 173, 299, 1046
Sfr303I CCGCGG 1 cut(s) 240
SgrBI CCGCGG 1 cut(s) 240
SinI GGWCC 3 cut(s) 382, 521, 686
SmiMI CAYNNNNRTG 1 cut(s) 956
SpeI ACTAGT 1 cut(s) 574
SphI GCATGC 1 cut(s) 135
Sse9I AATT 6 cut(s) 112, 256, 807, 849, 970, 1128
SseBI AGGCCT 1 cut(s) 538
SsiI CCGC 3 cut(s) 237, 239, 284
SspI AATATT 1 cut(s) 860
SspMI CTAG 2 cut(s) 503, 575
StuI AGGCCT 1 cut(s) 538
StyD4I CCNGG 2 cut(s) 191, 436
StyI CCWWGG 2 cut(s) 900, 1167
TaaI ACNGT 4 cut(s) 234, 481, 758, 868
TaqI TCGA 2 cut(s) 98, 269
TasI AATT 6 cut(s) 112, 256, 807, 849, 970, 1128
TatI WGTACW 2 cut(s) 960, 1005
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 2 cut(s) 100, 263
Tru1I TTAA 3 cut(s) 228, 252, 1080
Tru9I TTAA 3 cut(s) 228, 252, 1080
TscAI CASTG 3 cut(s) 533, 761, 873
TseI GCWGC 8 cut(s) 128, 175, 301, 304, 650, 778, 1139, 1142
TspDTI ATGAA 6 cut(s) 56, 97, 585, 618, 940, 1081
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 3 cut(s) 533, 761, 873
VpaK11BI GGWCC 3 cut(s) 382, 521, 686
XapI RAATTY 2 cut(s) 112, 256
XceI RCATGY 3 cut(s) 135, 278, 1012
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmiI GTMKAC 1 cut(s) 892
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 2 cut(s) 503, 575
Zsp2I ATGCAT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.