RLG00000001996

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
24072812 .. 24073171
360 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001996

Sequence Viewer

Length: 360 bp
ATGGCGAAATCATCATCAGCAGCAGCAGCAGCAGGCAGGAAGAGGAAGAGTTCAAGTGTTTCGAACTCGGAAATAATAGACGCAGCAAATCTGCTCATGCAACTCAGCGGAAGCTCCGATACGATTTACTACGACGCAGAAGAAGAAAGCGTTGGTAAAACAACGCCAACTACTCATCCCGATGATCATGATCAGGTGTCTTCTAATTCTGCCTTTAAATATAGAGTGTTTGAAGATGAAGTGGGTTTCGGTGAGCGAATTAAGAAGAAACGATTTCGCTTGATTTCGGATCTGTACGAGCAGACGAAGCCTCTTAAAAATGGTGGTGTTGTAAATAGAAGGAAAAGGAGGATGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.25

Weight (kDa)

9.56

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 108
AclWI GGATC 1 cut(s) 297
AfaI GTAC 1 cut(s) 296
AgsI TTSAA 2 cut(s) 54, 233
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
AlwI GGATC 1 cut(s) 297
ApeKI GCWGC 5 cut(s) 20, 23, 26, 29, 83
AsuHPI GGTGA 1 cut(s) 263
AsuII TTCGAA 1 cut(s) 62
BarI GAAGNNNNNNTAC 2 cut(s) 103, 135
BbsI GAAGAC 1 cut(s) 192
BbvI GCAGC 5 cut(s) 32, 35, 38, 41, 95
BccI CCATC 1 cut(s) 346
BclI TGATCA 2 cut(s) 184, 190
BisI GCNGC 5 cut(s) 21, 24, 27, 30, 84
BlsI GCNGC 5 cut(s) 22, 25, 28, 31, 85
BpiI GAAGAC 1 cut(s) 192
Bpu14I TTCGAA 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 189
BseGI GGATG 2 cut(s) 175, 357
BseJI GATNNNNATC 1 cut(s) 189
BseMII CTCAG 1 cut(s) 118
BseXI GCAGC 5 cut(s) 32, 35, 38, 41, 95
Bsp119I TTCGAA 1 cut(s) 62
Bsp143I GATC 3 cut(s) 184, 190, 289
BspACI CCGC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 117
BspHI TCATGA 1 cut(s) 187
BspPI GGATC 1 cut(s) 297
BspT104I TTCGAA 1 cut(s) 62
BssMI GATC 3 cut(s) 184, 190, 289
Bst6I CTCTTC 2 cut(s) 35, 41
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 175, 357
BstKTI GATC 3 cut(s) 187, 193, 292
BstMBI GATC 3 cut(s) 184, 190, 289
BstMWI GCNNNNNNNGC 3 cut(s) 26, 29, 307
BstV1I GCAGC 5 cut(s) 32, 35, 38, 41, 95
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BtsCI GGATG 2 cut(s) 175, 357
Cac8I GCNNGC 1 cut(s) 34
CciI TCATGA 1 cut(s) 187
CseI GACGC 2 cut(s) 89, 143
Csp6I GTAC 1 cut(s) 295
CviAII CATG 2 cut(s) 97, 188
CviJI RGCY 2 cut(s) 114, 310
CviKI_1 RGCY 2 cut(s) 114, 310
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 104
DpnI GATC 3 cut(s) 186, 192, 291
DpnII GATC 3 cut(s) 184, 190, 289
DraI TTTAAA 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 35, 41
EarI CTCTTC 2 cut(s) 35, 41
FaeI CATG 2 cut(s) 100, 191
FaiI YATR 3 cut(s) 98, 189, 222
FatI CATG 2 cut(s) 96, 187
FbaI TGATCA 2 cut(s) 184, 190
Fnu4HI GCNGC 5 cut(s) 21, 24, 27, 30, 84
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 5 cut(s) 21, 24, 27, 30, 84
GluI GCNGC 5 cut(s) 21, 24, 27, 30, 84
HgaI GACGC 2 cut(s) 89, 143
Hin1II CATG 2 cut(s) 100, 191
HphI GGTGA 1 cut(s) 263
Hpy188I TCNGA 3 cut(s) 70, 118, 289
Hpy188III TCNNGA 2 cut(s) 179, 188
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 333
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 29, 307
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 2 cut(s) 100, 191
Ksp22I TGATCA 2 cut(s) 184, 190
Kzo9I GATC 3 cut(s) 184, 190, 289
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 3 cut(s) 18, 22, 179
Lsp1109I GCAGC 5 cut(s) 32, 35, 38, 41, 95
MalI GATC 3 cut(s) 186, 192, 291
MboI GATC 3 cut(s) 184, 190, 289
MboII GAAGA 7 cut(s) 52, 58, 152, 155, 192, 245, 277
MflI RGATCY 1 cut(s) 289
MluCI AATT 2 cut(s) 205, 258
MnlI CCTC 3 cut(s) 36, 321, 342
MseI TTAA 3 cut(s) 216, 261, 315
MslI CAYNNNNRTG 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 108
MwoI GCNNNNNNNGC 3 cut(s) 26, 29, 307
NdeII GATC 3 cut(s) 184, 190, 289
NlaIII CATG 2 cut(s) 100, 191
NspV TTCGAA 1 cut(s) 62
PagI TCATGA 1 cut(s) 187
PkrI GCNGC 5 cut(s) 22, 25, 28, 31, 85
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 3 cut(s) 216, 261, 315
SatI GCNGC 5 cut(s) 21, 24, 27, 30, 84
Sau3AI GATC 3 cut(s) 184, 190, 289
SetI ASST 2 cut(s) 116, 198
SfuI TTCGAA 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 2 cut(s) 205, 258
SsiI CCGC 1 cut(s) 108
TaqI TCGA 1 cut(s) 62
TasI AATT 2 cut(s) 205, 258
Tru1I TTAA 3 cut(s) 216, 261, 315
Tru9I TTAA 3 cut(s) 216, 261, 315
TseI GCWGC 5 cut(s) 20, 23, 26, 29, 83
TspDTI ATGAA 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.