Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005025

Physical Location & Seq

Genomic Coordinates Reverse (-)

19309563 .. 19317934

Gene Structure 8372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G199500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGAGGCATCGAATATCGCCGTGTCAATGCCAAGGGTTAACCTGAAAGACACTATTGAAGAGCTGTTGAAGTTCACTCTCCAATCTTGCACAAACGGAACCCTAGAAATCGATCTAGGGCTGCCCAAGGAATTGTGCTCCCGCCTCCTCAAACCCGAGCCAAACGACCTGTCCTCCCCCTCCCACTCCGATTCTTCTACTGGTATTTTTGAAGGGATTCCACCGTACCCTTTATACAAGCGTCTCGCATTGGCTTTGCATGAATCCATGGCTTCTGGTACCCTTTTCGGTACATGCAACAATTTAACCATTATTCATCAAGAAAGTCTCTTGAAGGAGAAAGAAAATGAATGGCAGAAGCTGATCTTGGAGAAGGGATCTGAATTAGTAAATGTATTGAAGACTGTTAAAATTGAGCTTCATGTTCAGGAGCCTTTCTTTTCGCAGCTTAAAGATGGCCTCAAAACAATTGAAGGAAGGTGTGCTTTGGGTAATTGCAGTAGGTACGACGATTCGAGTATCATGCATATACCAGTGAGGCTTTATGAATGGGGGTTCCTGTTAAGTAAAAAGAAAAAAGGGTTGGGGGACTTGGATCATAGTGCAGTCTTGAGTCAGTATCTAACGAAGGAAGAGTTTTTTAGAAGAATTGACTCAGGATCTTTGATTCTCTTCAATAAATGTCTACTATTTGAAGTTCAGGATATTCGCAGTTATTCTTCGTTCTCTGAAATGATGGAGGCAGAGGGTCTTTCTAAAGTCCTTCCTGGAGTTGAAACCATTGAACAAGGTGTGCAAATTTACAGAAAGTTTTACACAGAAGAAAAGGAAAGGTCAAATGGTGTCCTTGCGATTTGTGTTTCAAAGTTTCCTCTCCAGCCTTACATTTCATTAGCTAGATTGCTATTTGGATTGAGTCTGGGGGGTCTTCAAGGCCTTCTTGGTCTGGCACATACCACAGGATCTACTCCAGATGCTCTACCCCCGCCAACATCTACTCTTCTGTCATCATTTGTGCTGCCATATAAATTGAATGTTGAAGGTAGTACATTGACTCATGGAGCTAGGGCCTTGGCAAAACATGCACATCGGAGTAGCAGTAAATATTGGGGTACCTTAGATGGAAGTGATTCCAATAAAAACAGGCTCGCATTGGATGTCATCACTCGATTAATGACACATTGTTGCTGGTTAAATGTGCATAGTGTTCAACCACACGATGTTGTCTTTGAAATAAGGGTTGCTGAAGGATATGGTGCACGGTGGTCGGAAGATGGTAGCAAGTTTATCGGATTTTTAGAGCCATACATGGAAGATGGTCATCCAAAGGGATGGAAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASCH

Protein Analysis

448

Amino Acids

49.92

Weight (kDa)

6.33

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43465 AT2G43465 AT2G43465 AT2G43465 AT2G43465 AT2G43465 AT3G03320
fragaria_vesca	FvH4_2g24830
malus_domestica	MD04G1046100.v1.1
prunus_persica	Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1
pyrus_communis	pycom04g04000
rosa_chinensis	RchiOBHm_Chr6g0292651
rosa_laevigata	RLG00000012001
rosa_roxburghii	Rroxscaffold_7G00174820
rosa_rugosa	Rorug06G0228800
rosa_samantha	Rh6AG342100 Rh6BG349400 Rh6CG356300 Rh6DG342400
rosa_wichuraiana	Rw6G029810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	278, 1112
AccB1I	GGYRCC	2 cut(s)	278, 1112
AccI	GTMKAC	1 cut(s)	685
AciI	CCGC	2 cut(s)	142, 986
AclWI	GGATC	4 cut(s)	385, 603, 667, 970
AcsI	RAATTY	1 cut(s)	798
AcuI	CTGAAG	1 cut(s)	1266
AfaI	GTAC	6 cut(s)	227, 280, 292, 506, 1048, 1114
AjnI	CCWGG	1 cut(s)	766
AjuI	GAANNNNNNNTTGG	4 cut(s)	350, 382, 566, 598
AluBI	AGCT	6 cut(s)	64, 361, 418, 448, 896, 1064
AluI	AGCT	6 cut(s)	64, 361, 418, 448, 896, 1064
Alw21I	GWGCWC	2 cut(s)	140, 1261
Alw26I	GTCTC	2 cut(s)	248, 332
Alw44I	GTGCAC	1 cut(s)	1257
AlwI	GGATC	4 cut(s)	385, 603, 667, 970
AlwNI	CAGNNNCTG	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	3 cut(s)	457, 934, 1068
ApaLI	GTGCAC	1 cut(s)	1257
ApeKI	GCWGC	3 cut(s)	121, 445, 1018
ApoI	RAATTY	1 cut(s)	798
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AseI	ATTAAT	1 cut(s)	1172
Asp700I	GAANNNNTTC	2 cut(s)	216, 1129
Asp718I	GGTACC	2 cut(s)	278, 1112
AspS9I	GGNCC	1 cut(s)	1068
AvaI	CYCGRG	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	1261
BanI	GGYRCC	2 cut(s)	278, 1112
BbsI	GAAGAC	2 cut(s)	407, 920
Bbv12I	GWGCWC	2 cut(s)	140, 1261
BbvI	GCAGC	3 cut(s)	108, 457, 1005
BccI	CCATC	6 cut(s)	449, 730, 1115, 1268, 1310, 1326
BceAI	ACGGC	1 cut(s)	5
BcgI	CGANNNNNNTGC	6 cut(s)	505, 539, 1248, 1270, 1282, 1304
BciT130I	CCWGG	1 cut(s)	768
BcoDI	GTCTC	2 cut(s)	248, 332
BfaI	CTAG	4 cut(s)	104, 116, 897, 1065
BisI	GCNGC	3 cut(s)	122, 446, 1019
BlsI	GCNGC	3 cut(s)	123, 447, 1020
Bme1390I	CCNGG	1 cut(s)	768
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	1068
BmiI	GGNNCC	5 cut(s)	100, 280, 432, 557, 1114
BmrFI	CCNGG	1 cut(s)	768
BmsI	GCATC	2 cut(s)	17, 964
BpiI	GAAGAC	2 cut(s)	407, 920
BpmI	CTGGAG	3 cut(s)	789, 860, 954
BpuEI	CTTGAG	1 cut(s)	631
Bsa29I	ATCGAT	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	1320
BsaJI	CCNNGG	4 cut(s)	32, 126, 267, 1071
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 1084, 1114
Bse1I	ACTGG	2 cut(s)	205, 533
Bse8I	GATNNNNATC	1 cut(s)	1320
BseBI	CCWGG	1 cut(s)	768
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	4 cut(s)	32, 126, 267, 1071
BseGI	GGATG	3 cut(s)	1162, 1321, 1337
BseJI	GATNNNNATC	1 cut(s)	1320
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	2 cut(s)	205, 533
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	1261
BseXI	GCAGC	3 cut(s)	108, 457, 1005
BsgI	GTGCAG	1 cut(s)	624
BshFI	GGCC	3 cut(s)	459, 936, 1070
BshNI	GGYRCC	2 cut(s)	278, 1112
BshVI	ATCGAT	1 cut(s)	111
BsiHKAI	GWGCWC	2 cut(s)	140, 1261
BsiHKCI	CYCGRG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	602
BsmAI	GTCTC	2 cut(s)	248, 332
BsmBI	CGTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	3 cut(s)	459, 936, 1070
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	140, 1261
Bsp143I	GATC	6 cut(s)	112, 363, 377, 595, 659, 962
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	2 cut(s)	142, 986
BspANI	GGCC	3 cut(s)	459, 936, 1070
BspCNI	CTCAG	1 cut(s)	668
BspDI	ATCGAT	1 cut(s)	111
BspLI	GGNNCC	5 cut(s)	100, 280, 432, 557, 1114
BspPI	GGATC	4 cut(s)	385, 603, 667, 970
BspQI	GCTCTTC	1 cut(s)	54
BspT107I	GGYRCC	2 cut(s)	278, 1112
BsrI	ACTGG	2 cut(s)	205, 533
BssECI	CCNNGG	4 cut(s)	32, 126, 267, 1071
BssMI	GATC	6 cut(s)	112, 363, 377, 595, 659, 962
BssT1I	CCWWGG	4 cut(s)	32, 126, 267, 1071
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	3 cut(s)	225, 406, 1263
Bst6I	CTCTTC	4 cut(s)	54, 627, 677, 1005
BstAPI	GCANNNNNTGC	1 cut(s)	1082
BstC8I	GCNNGC	1 cut(s)	1149
BstDEI	CTNAG	2 cut(s)	655, 1117
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	3 cut(s)	1162, 1321, 1337
BstKTI	GATC	6 cut(s)	115, 366, 380, 598, 662, 965
BstMAI	GTCTC	2 cut(s)	248, 332
BstMBI	GATC	6 cut(s)	112, 363, 377, 595, 659, 962
BstMWI	GCNNNNNNNGC	1 cut(s)	1082
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	2 cut(s)	297, 1085
BstSCI	CCNGG	1 cut(s)	766
BstSLI	GKGCMC	1 cut(s)	1261
BstV1I	GCAGC	3 cut(s)	108, 457, 1005
BstV2I	GAAGAC	2 cut(s)	407, 920
BstX2I	RGATCY	3 cut(s)	377, 659, 962
BstXI	CCANNNNNNTGG	1 cut(s)	1332
BstYI	RGATCY	3 cut(s)	377, 659, 962
Bsu15I	ATCGAT	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	459, 936, 1070
BsuTUI	ATCGAT	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	1162, 1321, 1337
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	1 cut(s)	1149
CaiI	CAGNNNCTG	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	1068
ClaI	ATCGAT	1 cut(s)	111
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	6 cut(s)	226, 279, 291, 505, 1047, 1113
CviAII	CATG	8 cut(s)	260, 268, 294, 422, 523, 1058, 1082, 1309
CviQI	GTAC	6 cut(s)	226, 279, 291, 505, 1047, 1113
DdeI	CTNAG	2 cut(s)	655, 1117
DpnI	GATC	6 cut(s)	114, 365, 379, 597, 661, 964
DpnII	GATC	6 cut(s)	112, 363, 377, 595, 659, 962
Eam1104I	CTCTTC	4 cut(s)	54, 627, 677, 1005
EarI	CTCTTC	4 cut(s)	54, 627, 677, 1005
Eco130I	CCWWGG	4 cut(s)	32, 126, 267, 1071
Eco147I	AGGCCT	1 cut(s)	936
Eco57I	CTGAAG	1 cut(s)	1266
Eco88I	CYCGRG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	1068
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	4 cut(s)	32, 126, 267, 1071
EcoT22I	ATGCAT	1 cut(s)	528
ErhI	CCWWGG	4 cut(s)	32, 126, 267, 1071
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	8 cut(s)	263, 271, 297, 425, 526, 1061, 1085, 1312
FalI	AAGNNNNNCTT	6 cut(s)	350, 382, 469, 501, 924, 956
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	8 cut(s)	259, 267, 293, 421, 522, 1057, 1081, 1308
FauI	CCCGC	2 cut(s)	149, 993
FblI	GTMKAC	1 cut(s)	685
Fnu4HI	GCNGC	3 cut(s)	122, 446, 1019
FokI	GGATG	2 cut(s)	1169, 1308
Fsp4HI	GCNGC	3 cut(s)	122, 446, 1019
FspBI	CTAG	4 cut(s)	104, 116, 897, 1065
GluI	GCNGC	3 cut(s)	122, 446, 1019
GsuI	CTGGAG	3 cut(s)	789, 860, 954
HaeIII	GGCC	3 cut(s)	459, 936, 1070
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	8 cut(s)	263, 271, 297, 425, 526, 1061, 1085, 1312
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HpaI	GTTAAC	1 cut(s)	40
Hpy166II	GTNNAC	4 cut(s)	40, 75, 686, 1259
Hpy188I	TCNGA	6 cut(s)	190, 382, 730, 1092, 1270, 1292
Hpy188III	TCNNGA	7 cut(s)	320, 331, 428, 610, 657, 701, 971
Hpy8I	GTNNAC	4 cut(s)	40, 75, 686, 1259
Hpy99I	CGWCG	1 cut(s)	512
HpyCH4III	ACNGT	3 cut(s)	225, 406, 1263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1082
HpyF3I	CTNAG	2 cut(s)	655, 1117
Hsp92II	CATG	8 cut(s)	263, 271, 297, 425, 526, 1061, 1085, 1312
KpnI	GGTACC	2 cut(s)	282, 1116
KspAI	GTTAAC	1 cut(s)	40
Kzo9I	GATC	6 cut(s)	112, 363, 377, 595, 659, 962
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	3 cut(s)	143, 430, 1061
Lsp1109I	GCAGC	3 cut(s)	108, 457, 1005
LweI	GCATC	2 cut(s)	17, 964
MaeI	CTAG	4 cut(s)	104, 116, 897, 1065
MalI	GATC	6 cut(s)	114, 365, 379, 597, 661, 964
MboI	GATC	6 cut(s)	112, 363, 377, 595, 659, 962
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	3 cut(s)	377, 659, 962
MhlI	GDGCHC	2 cut(s)	140, 1261
MluCI	AATT	9 cut(s)	131, 301, 383, 411, 468, 493, 648, 798, 1028
MlyI	GAGTC	4 cut(s)	622, 647, 925, 1048
MmeI	TCCRAC	1 cut(s)	1248
MnlI	CCTC	9 cut(s)	155, 158, 184, 190, 470, 531, 733, 739, 882
Mph1103I	ATGCAT	1 cut(s)	528
MroXI	GAANNNNTTC	2 cut(s)	216, 1129
MseI	TTAA	7 cut(s)	39, 305, 408, 450, 563, 1172, 1193
MspR9I	CCNGG	1 cut(s)	768
MunI	CAATTG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	1 cut(s)	1082
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	6 cut(s)	112, 363, 377, 595, 659, 962
NlaIII	CATG	8 cut(s)	263, 271, 297, 425, 526, 1061, 1085, 1312
NlaIV	GGNNCC	5 cut(s)	100, 280, 432, 557, 1114
NsiI	ATGCAT	1 cut(s)	528
NspI	RCATGY	2 cut(s)	297, 1085
PceI	AGGCCT	1 cut(s)	936
PciSI	GCTCTTC	1 cut(s)	54
PdmI	GAANNNNTTC	2 cut(s)	216, 1129
PfeI	GAWTC	6 cut(s)	191, 217, 263, 512, 667, 1130
PfoI	TCCNGGA	1 cut(s)	766
PkrI	GCNGC	3 cut(s)	123, 447, 1020
PleI	GAGTC	4 cut(s)	621, 647, 924, 1048
PpsI	GAGTC	4 cut(s)	621, 647, 924, 1048
PshBI	ATTAAT	1 cut(s)	1172
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	5 cut(s)	100, 280, 432, 557, 1114
PspPI	GGNCC	1 cut(s)	1068
PstNI	CAGNNNCTG	1 cut(s)	361
PsuI	RGATCY	3 cut(s)	377, 659, 962
RsaI	GTAC	6 cut(s)	227, 280, 292, 506, 1048, 1114
RsaNI	GTAC	6 cut(s)	226, 279, 291, 505, 1047, 1113
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	7 cut(s)	39, 305, 408, 450, 563, 1172, 1193
SatI	GCNGC	3 cut(s)	122, 446, 1019
Sau3AI	GATC	6 cut(s)	112, 363, 377, 595, 659, 962
Sau96I	GGNCC	1 cut(s)	1068
SchI	GAGTC	4 cut(s)	622, 647, 925, 1048
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	2 cut(s)	140, 1261
SfaNI	GCATC	2 cut(s)	17, 964
SmlI	CTYRAG	1 cut(s)	610
SmoI	CTYRAG	1 cut(s)	610
Sse9I	AATT	9 cut(s)	131, 301, 383, 411, 468, 493, 648, 798, 1028
SseBI	AGGCCT	1 cut(s)	936
SsiI	CCGC	2 cut(s)	142, 986
SspI	AATATT	1 cut(s)	1106
SspMI	CTAG	4 cut(s)	104, 116, 897, 1065
StuI	AGGCCT	1 cut(s)	936
StyD4I	CCNGG	1 cut(s)	766
StyI	CCWWGG	4 cut(s)	32, 126, 267, 1071
TaaI	ACNGT	3 cut(s)	225, 406, 1263
TaqI	TCGA	4 cut(s)	11, 111, 515, 1168
TasI	AATT	9 cut(s)	131, 301, 383, 411, 468, 493, 648, 798, 1028
TatI	WGTACW	1 cut(s)	1046
TfiI	GAWTC	6 cut(s)	191, 217, 263, 512, 667, 1130
Tru1I	TTAA	7 cut(s)	39, 305, 408, 450, 563, 1172, 1193
Tru9I	TTAA	7 cut(s)	39, 305, 408, 450, 563, 1172, 1193
TscAI	CASTG	1 cut(s)	540
TseI	GCWGC	3 cut(s)	121, 445, 1018
TspDTI	ATGAA	6 cut(s)	276, 305, 363, 410, 561, 879
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	540
VneI	GTGCAC	1 cut(s)	1257
VspI	ATTAAT	1 cut(s)	1172
XapI	RAATTY	1 cut(s)	798
XceI	RCATGY	2 cut(s)	297, 1085
XmiI	GTMKAC	1 cut(s)	685
XmnI	GAANNNNTTC	2 cut(s)	216, 1129
XspI	CTAG	4 cut(s)	104, 116, 897, 1065
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.