Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005025

Physical Location & Seq

Genomic Coordinates Reverse (-)

3584283 .. 3589331

Gene Structure 5049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04000.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCATGTTCAGATCAATTTAAAATCACTCTTAGAACTGAGAAAAGGCGCTAGGAAGAAAACTGGGAGAAGAATCCGAAAGCTGAGCAAGAAAATGGCAGAACGGGTAAACCTGGCAGACACTCTCGAAGAGCTCCTTAACTTCACTCTCCAATCTTTCGTAAATGGAACCCTAGAATTCGATCTAGGGTTGCCCAAGGACTTCTGCTCTCAACTACTCCAACCCGAACCCGAACCCGAACCAAACGACGACCTCTTCCCCCCTTCCCTCTCCGATACTACAGATTGTTTTCAAGGGATTCCACCGTATCCTTTATACAAGTGTCTGGCATTGGCTTTGCACGAATCCATAATTTCTGGCACCTTTCTTGGCACACGTCACAATGTGGCCTCGGATGTTCAGGAAAGTTCCTTGAAAGAAGAAGAAAATGGATGGCAGAAGCTGATATCAGAGAAGGGATCTGAATTATTTAATATGTTAAAGGCTGTTGACTTTGAGCTTCATGTTCAGGAGCCTTTCTTTTCACAGCTTAAAGATGGCCTCAAAACAATTGAAGGAAGGTGTGCTATTGGTGACTACTGTAGGCTTCCTCTCTGCACAACCATTTTGTTCAGGAGTATGTGGACAACTAAATTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASCH

Protein Analysis

214

Amino Acids

24.22

Weight (kDa)

5.87

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43465 AT2G43465 AT2G43465 AT2G43465 AT2G43465 AT2G43465 AT3G03320
fragaria_vesca	FvH4_2g24830
malus_domestica	MD04G1046100.v1.1
prunus_persica	Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1 Prupe.1G199500_v2.0.a1
pyrus_communis	pycom04g04000
rosa_chinensis	RchiOBHm_Chr6g0292651
rosa_laevigata	RLG00000012001
rosa_roxburghii	Rroxscaffold_7G00174820
rosa_rugosa	Rorug06G0228800
rosa_samantha	Rh6AG342100 Rh6BG349400 Rh6CG356300 Rh6DG342400
rosa_wichuraiana	Rw6G029810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AclWI	GGATC	1 cut(s)	466
AcsI	RAATTY	1 cut(s)	176
AdeI	CACNNNGTG	1 cut(s)	385
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	293, 415, 554
AjiI	CACGTC	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	5 cut(s)	82, 133, 442, 499, 529
AluI	AGCT	5 cut(s)	82, 133, 442, 499, 529
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	466
AlwNI	CAGNNNCTG	1 cut(s)	442
AoxI	GGCC	2 cut(s)	387, 538
ApoI	RAATTY	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	584
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BccI	CCATC	2 cut(s)	426, 530
BciT130I	CCWGG	1 cut(s)	113
BciVI	GTATCC	1 cut(s)	318
BfaI	CTAG	3 cut(s)	51, 173, 185
BfmI	CTRYAG	2 cut(s)	279, 580
BfoI	RGCGCY	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	318
BlpI	GCTNAGC	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	113
BmgBI	CACGTC	1 cut(s)	377
BmiI	GGNNCC	3 cut(s)	169, 361, 513
BmrFI	CCNGG	1 cut(s)	113
BmrI	ACTGGG	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	72
Bpu1102I	GCTNAGC	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	195, 390
Bse1I	ACTGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	195, 390
BseGI	GGATG	2 cut(s)	400, 437
BseMII	CTCAG	2 cut(s)	29, 74
BseNI	ACTGG	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	580
BshFI	GGCC	2 cut(s)	389, 540
BshNI	GGYRCC	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	389, 540
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	12, 181, 458
Bsp1720I	GCTNAGC	1 cut(s)	83
BspANI	GGCC	2 cut(s)	389, 540
BspCNI	CTCAG	2 cut(s)	30, 75
BspLI	GGNNCC	3 cut(s)	169, 361, 513
BspPI	GGATC	1 cut(s)	466
BspQI	GCTCTTC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	195, 390
BssMI	GATC	3 cut(s)	12, 181, 458
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	2 cut(s)	306, 581
Bst6I	CTCTTC	2 cut(s)	123, 260
BstDEI	CTNAG	3 cut(s)	31, 38, 83
BstF5I	GGATG	2 cut(s)	400, 437
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	3 cut(s)	15, 184, 461
BstMBI	GATC	3 cut(s)	12, 181, 458
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	2 cut(s)	279, 580
BstX2I	RGATCY	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	458
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	389, 540
BtrI	CACGTC	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	400, 437
CaiI	CAGNNNCTG	1 cut(s)	442
CfoI	GCGC	1 cut(s)	50
CviAII	CATG	2 cut(s)	5, 503
DdeI	CTNAG	3 cut(s)	31, 38, 83
DpnI	GATC	3 cut(s)	14, 183, 460
DpnII	GATC	3 cut(s)	12, 181, 458
DraI	TTTAAA	1 cut(s)	21
DraIII	CACNNNGTG	1 cut(s)	385
Eam1104I	CTCTTC	2 cut(s)	123, 260
EarI	CTCTTC	2 cut(s)	123, 260
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	447
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	2 cut(s)	8, 506
FaiI	YATR	6 cut(s)	6, 316, 350, 476, 504, 620
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	2 cut(s)	4, 502
FokI	GGATG	2 cut(s)	407, 444
FriOI	GRGCYC	1 cut(s)	135
FspBI	CTAG	3 cut(s)	51, 173, 185
GlaI	GCGC	1 cut(s)	49
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	389, 540
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	8, 506
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	3 cut(s)	72, 298, 344
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	3 cut(s)	109, 490, 624
Hpy188I	TCNGA	6 cut(s)	12, 77, 274, 394, 451, 463
Hpy188III	TCNNGA	4 cut(s)	125, 401, 509, 613
Hpy8I	GTNNAC	3 cut(s)	109, 490, 624
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	4 cut(s)	273, 448, 548, 552
HpyCH4III	ACNGT	2 cut(s)	306, 581
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	3 cut(s)	4, 340, 597
HpyF3I	CTNAG	3 cut(s)	31, 38, 83
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	2 cut(s)	8, 506
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	12, 181, 458
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	2 cut(s)	138, 511
LpnPI	CCDG	8 cut(s)	48, 98, 125, 311, 342, 386, 494, 598
MaeI	CTAG	3 cut(s)	51, 173, 185
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	2 cut(s)	377, 572
MalI	GATC	3 cut(s)	14, 183, 460
MboI	GATC	3 cut(s)	12, 181, 458
MboII	GAAGA	6 cut(s)	67, 81, 140, 247, 431, 434
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	6 cut(s)	16, 176, 351, 464, 549, 632
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	5 cut(s)	263, 278, 400, 551, 600
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	20, 138, 471, 479, 531
MspR9I	CCNGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	113
NdeII	GATC	3 cut(s)	12, 181, 458
NlaIII	CATG	2 cut(s)	8, 506
NlaIV	GGNNCC	3 cut(s)	169, 361, 513
NmuCI	GTSAC	2 cut(s)	377, 572
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	72, 298, 344
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	3 cut(s)	169, 361, 513
PstNI	CAGNNNCTG	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	458
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	5 cut(s)	20, 138, 471, 479, 531
Sau3AI	GATC	3 cut(s)	12, 181, 458
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	135
SfcI	CTRYAG	2 cut(s)	279, 580
Sse9I	AATT	6 cut(s)	16, 176, 351, 464, 549, 632
SspMI	CTAG	3 cut(s)	51, 173, 185
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	306, 581
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	2 cut(s)	126, 180
TasI	AATT	6 cut(s)	16, 176, 351, 464, 549, 632
TfiI	GAWTC	3 cut(s)	72, 298, 344
Tru1I	TTAA	5 cut(s)	20, 138, 471, 479, 531
Tru9I	TTAA	5 cut(s)	20, 138, 471, 479, 531
TseFI	GTSAC	2 cut(s)	377, 572
Tsp45I	GTSAC	2 cut(s)	377, 572
TspDTI	ATGAA	1 cut(s)	491
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	3 cut(s)	51, 173, 185
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.