Cyclin-dependent kinase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67580 AT1G67580 |
| fragaria_vesca | FvH4_4g24200 |
| malus_domestica | MD13G1113400.v1.1 MD16G1112700.v1.1 |
| prunus_persica | Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 |
| pyrus_communis | pycom13g09880 pycom16g09530 |
| rosa_chinensis | RchiOBHm_Chr4g0431041 |
| rosa_laevigata | RLG00000006930 |
| rosa_multiflora | Rmu_co8378327.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00372660 |
| rosa_rugosa | Rorug04G0247500 Rorug04G0247600 Rorug04G0247700.1 Rorug04G0247800 |
| rosa_samantha | Rh4AG304400 Rh4BG311600 Rh4CG327900 Rh4DG308100 |
| rosa_wichuraiana | Rw4G026430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 922 |
| Acc16I | TGCGCA | 1 cut(s) | 1952 |
| Acc36I | ACCTGC | 3 cut(s) | 346, 1162, 1611 |
| AccB1I | GGYRCC | 1 cut(s) | 1714 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 441, 1540 |
| AccI | GTMKAC | 1 cut(s) | 1682 |
| AccII | CGCG | 1 cut(s) | 30 |
| AciI | CCGC | 5 cut(s) | 234, 524, 527, 797, 872 |
| AclWI | GGATC | 2 cut(s) | 1990, 2180 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 4 cut(s) | 613, 828, 867, 1829 |
| AcuI | CTGAAG | 3 cut(s) | 573, 1002, 1172 |
| AfaI | GTAC | 4 cut(s) | 579, 900, 1454, 1709 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 294, 441, 768, 878, 926, 1002, 1540 |
| AflII | CTTAAG | 1 cut(s) | 935 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 52 |
| AjnI | CCWGG | 4 cut(s) | 301, 811, 1888, 1906 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 388, 420, 1974, 2006 |
| Alw26I | GTCTC | 8 cut(s) | 408, 555, 687, 1136, 1213, 1478, 1656, 1871 |
| AlwI | GGATC | 2 cut(s) | 1990, 2180 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1118, 1154 |
| AoxI | GGCC | 5 cut(s) | 3, 257, 285, 1293, 1886 |
| ApeKI | GCWGC | 7 cut(s) | 228, 231, 739, 794, 1157, 2060, 2218 |
| ApoI | RAATTY | 4 cut(s) | 613, 828, 867, 1829 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 805, 1332, 2117 |
| AspLEI | GCGC | 3 cut(s) | 502, 1953, 2160 |
| AspS9I | GGNCC | 3 cut(s) | 46, 257, 285 |
| AsuC2I | CCSGG | 2 cut(s) | 50, 769 |
| AsuHPI | GGTGA | 7 cut(s) | 146, 317, 731, 827, 1373, 1456, 1634 |
| AvaII | GGWCC | 1 cut(s) | 46 |
| AxyI | CCTNAGG | 1 cut(s) | 2043 |
| BaeGI | GKGCMC | 1 cut(s) | 1717 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 1 cut(s) | 1714 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 882, 914, 1170, 1202 |
| BauI | CACGAG | 2 cut(s) | 1137, 2078 |
| BbsI | GAAGAC | 3 cut(s) | 19, 615, 1598 |
| BbvI | GCAGC | 7 cut(s) | 240, 243, 751, 806, 1169, 2047, 2230 |
| BccI | CCATC | 7 cut(s) | 125, 783, 887, 938, 1306, 1393, 1441 |
| BceAI | ACGGC | 2 cut(s) | 514, 1767 |
| BciT130I | CCWGG | 4 cut(s) | 303, 813, 1890, 1908 |
| BciVI | GTATCC | 1 cut(s) | 1054 |
| BclI | TGATCA | 2 cut(s) | 724, 1834 |
| BcnI | CCSGG | 2 cut(s) | 50, 769 |
| BcoDI | GTCTC | 8 cut(s) | 408, 555, 687, 1136, 1213, 1478, 1656, 1871 |
| BfaI | CTAG | 6 cut(s) | 486, 534, 743, 1002, 1092, 2254 |
| BfmI | CTRYAG | 3 cut(s) | 87, 1155, 2061 |
| BfrI | CTTAAG | 1 cut(s) | 935 |
| BfuAI | ACCTGC | 3 cut(s) | 346, 1162, 1611 |
| BfuI | GTATCC | 1 cut(s) | 1054 |
| BisI | GCNGC | 8 cut(s) | 229, 232, 527, 740, 795, 1158, 2061, 2219 |
| BlsI | GCNGC | 8 cut(s) | 230, 233, 528, 741, 796, 1159, 2062, 2220 |
| Bme1390I | CCNGG | 6 cut(s) | 50, 303, 769, 813, 1890, 1908 |
| Bme18I | GGWCC | 1 cut(s) | 46 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 52 |
| BmgT120I | GGNCC | 3 cut(s) | 46, 257, 285 |
| BmiI | GGNNCC | 5 cut(s) | 47, 300, 1497, 1716, 1806 |
| BmrFI | CCNGG | 6 cut(s) | 50, 303, 769, 813, 1890, 1908 |
| BmsI | GCATC | 4 cut(s) | 325, 982, 1990, 2056 |
| BpiI | GAAGAC | 3 cut(s) | 19, 615, 1598 |
| BpmI | CTGGAG | 6 cut(s) | 615, 669, 1302, 1517, 1929, 1971 |
| Bpu10I | CCTNAGC | 2 cut(s) | 93, 261 |
| BpuEI | CTTGAG | 1 cut(s) | 2133 |
| BpuMI | CCSGG | 2 cut(s) | 50, 769 |
| Bsa29I | ATCGAT | 1 cut(s) | 1758 |
| BsaI | GGTCTC | 1 cut(s) | 1136 |
| BsaJI | CCNNGG | 5 cut(s) | 71, 288, 1266, 1861, 2190 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 294, 441, 768, 878, 926, 1002, 1540 |
| Bse1I | ACTGG | 9 cut(s) | 13, 632, 686, 1011, 1285, 1534, 1984, 1988, 2242 |
| Bse21I | CCTNAGG | 1 cut(s) | 2043 |
| Bse3DI | GCAATG | 2 cut(s) | 673, 719 |
| BseBI | CCWGG | 4 cut(s) | 303, 813, 1890, 1908 |
| BseCI | ATCGAT | 1 cut(s) | 1758 |
| BseDI | CCNNGG | 5 cut(s) | 71, 288, 1266, 1861, 2190 |
| BseGI | GGATG | 4 cut(s) | 117, 971, 997, 1054 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 294, 441, 768, 878, 926, 1002, 1540 |
| BseMI | GCAATG | 2 cut(s) | 673, 719 |
| BseMII | CTCAG | 5 cut(s) | 390, 912, 1053, 1161, 2034 |
| BseNI | ACTGG | 9 cut(s) | 13, 632, 686, 1011, 1285, 1534, 1984, 1988, 2242 |
| BseRI | GAGGAG | 4 cut(s) | 208, 507, 1152, 2060 |
| BseSI | GKGCMC | 1 cut(s) | 1717 |
| BseXI | GCAGC | 7 cut(s) | 240, 243, 751, 806, 1169, 2047, 2230 |
| BseYI | CCCAGC | 1 cut(s) | 1963 |
| Bsh1236I | CGCG | 1 cut(s) | 30 |
| BshFI | GGCC | 5 cut(s) | 5, 259, 287, 1295, 1888 |
| BshNI | GGYRCC | 1 cut(s) | 1714 |
| BshVI | ATCGAT | 1 cut(s) | 1758 |
| BsiSI | CCGG | 2 cut(s) | 49, 769 |
| BslFI | GGGAC | 1 cut(s) | 59 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 294, 441, 768, 878, 926, 1002, 1540 |
| BsmAI | GTCTC | 8 cut(s) | 408, 555, 687, 1136, 1213, 1478, 1656, 1871 |
| BsmBI | CGTCTC | 1 cut(s) | 1478 |
| BsmFI | GGGAC | 1 cut(s) | 59 |
| BsnI | GGCC | 5 cut(s) | 5, 259, 287, 1295, 1888 |
| Bso31I | GGTCTC | 1 cut(s) | 1136 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1717 |
| Bsp1407I | TGTACA | 1 cut(s) | 577 |
| Bsp143I | GATC | 5 cut(s) | 724, 1465, 1834, 1982, 2185 |
| Bsp19I | CCATGG | 1 cut(s) | 1266 |
| Bsp68I | TCGCGA | 1 cut(s) | 30 |
| BspACI | CCGC | 5 cut(s) | 234, 524, 527, 797, 872 |
| BspANI | GGCC | 5 cut(s) | 5, 259, 287, 1295, 1888 |
| BspCNI | CTCAG | 5 cut(s) | 391, 913, 1052, 1160, 2035 |
| BspDI | ATCGAT | 1 cut(s) | 1758 |
| BspFNI | CGCG | 1 cut(s) | 30 |
| BspHI | TCATGA | 2 cut(s) | 727, 1561 |
| BspLI | GGNNCC | 5 cut(s) | 47, 300, 1497, 1716, 1806 |
| BspMAI | CTGCAG | 2 cut(s) | 1159, 2065 |
| BspMI | ACCTGC | 3 cut(s) | 346, 1162, 1611 |
| BspPI | GGATC | 2 cut(s) | 1990, 2180 |
| BspQI | GCTCTTC | 2 cut(s) | 516, 2190 |
| BspT107I | GGYRCC | 1 cut(s) | 1714 |
| BspTI | CTTAAG | 1 cut(s) | 935 |
| BspTNI | GGTCTC | 1 cut(s) | 1136 |
| BsrDI | GCAATG | 2 cut(s) | 673, 719 |
| BsrGI | TGTACA | 1 cut(s) | 577 |
| BsrI | ACTGG | 9 cut(s) | 13, 632, 686, 1011, 1285, 1534, 1984, 1988, 2242 |
| BssECI | CCNNGG | 5 cut(s) | 71, 288, 1266, 1861, 2190 |
| BssMI | GATC | 5 cut(s) | 724, 1465, 1834, 1982, 2185 |
| BssNAI | GTATAC | 1 cut(s) | 1683 |
| BssSI | CACGAG | 2 cut(s) | 1137, 2078 |
| BssT1I | CCWWGG | 5 cut(s) | 71, 288, 1266, 1861, 2190 |
| Bst1107I | GTATAC | 1 cut(s) | 1683 |
| Bst2BI | CACGAG | 2 cut(s) | 1137, 2078 |
| Bst2UI | CCWGG | 4 cut(s) | 303, 813, 1890, 1908 |
| Bst4CI | ACNGT | 3 cut(s) | 370, 621, 1680 |
| Bst6I | CTCTTC | 5 cut(s) | 226, 516, 2106, 2171, 2190 |
| BstAFI | CTTAAG | 1 cut(s) | 935 |
| BstAUI | TGTACA | 1 cut(s) | 577 |
| BstDEI | CTNAG | 8 cut(s) | 93, 261, 399, 921, 1039, 1147, 1349, 2043 |
| BstDSI | CCRYGG | 1 cut(s) | 1266 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 292 |
| BstF5I | GGATG | 4 cut(s) | 117, 971, 997, 1054 |
| BstFNI | CGCG | 1 cut(s) | 30 |
| BstHHI | GCGC | 3 cut(s) | 502, 1953, 2160 |
| BstKTI | GATC | 5 cut(s) | 727, 1468, 1837, 1985, 2188 |
| BstMAI | GTCTC | 8 cut(s) | 408, 555, 687, 1136, 1213, 1478, 1656, 1871 |
| BstMBI | GATC | 5 cut(s) | 724, 1465, 1834, 1982, 2185 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 506, 2066, 2144 |
| BstNI | CCWGG | 4 cut(s) | 303, 813, 1890, 1908 |
| BstNSI | RCATGY | 1 cut(s) | 1186 |
| BstSCI | CCNGG | 6 cut(s) | 48, 301, 767, 811, 1888, 1906 |
| BstSFI | CTRYAG | 3 cut(s) | 87, 1155, 2061 |
| BstSLI | GKGCMC | 1 cut(s) | 1717 |
| BstUI | CGCG | 1 cut(s) | 30 |
| BstV1I | GCAGC | 7 cut(s) | 240, 243, 751, 806, 1169, 2047, 2230 |
| BstV2I | GAAGAC | 3 cut(s) | 19, 615, 1598 |
| BstX2I | RGATCY | 1 cut(s) | 1982 |
| BstYI | RGATCY | 1 cut(s) | 1982 |
| BstZ17I | GTATAC | 1 cut(s) | 1683 |
| Bsu15I | ATCGAT | 1 cut(s) | 1758 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2043 |
| BsuI | GTATCC | 1 cut(s) | 1054 |
| BsuRI | GGCC | 5 cut(s) | 5, 259, 287, 1295, 1888 |
| BsuTUI | ATCGAT | 1 cut(s) | 1758 |
| BtgI | CCRYGG | 1 cut(s) | 1266 |
| BtsCI | GGATG | 4 cut(s) | 117, 971, 997, 1054 |
| BtsI | GCAGTG | 2 cut(s) | 495, 580 |
| BtsIMutI | CAGTG | 4 cut(s) | 6, 495, 580, 693 |
| BtuMI | TCGCGA | 1 cut(s) | 30 |
| BveI | ACCTGC | 3 cut(s) | 346, 1162, 1611 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1118, 1154 |
| CciI | TCATGA | 2 cut(s) | 727, 1561 |
| CfoI | GCGC | 3 cut(s) | 502, 1953, 2160 |
| Cfr13I | GGNCC | 3 cut(s) | 46, 257, 285 |
| ClaI | ATCGAT | 1 cut(s) | 1758 |
| CsiI | ACCWGGT | 1 cut(s) | 301 |
| Csp6I | GTAC | 4 cut(s) | 578, 899, 1453, 1708 |
| CviQI | GTAC | 4 cut(s) | 578, 899, 1453, 1708 |
| DdeI | CTNAG | 8 cut(s) | 93, 261, 399, 921, 1039, 1147, 1349, 2043 |
| DpnI | GATC | 5 cut(s) | 726, 1467, 1836, 1984, 2187 |
| DpnII | GATC | 5 cut(s) | 724, 1465, 1834, 1982, 2185 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 922 |
| DriI | GACNNNNNGTC | 1 cut(s) | 52 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 922 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 5 cut(s) | 226, 516, 2106, 2171, 2190 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 52 |
| EarI | CTCTTC | 5 cut(s) | 226, 516, 2106, 2171, 2190 |
| Eco130I | CCWWGG | 5 cut(s) | 71, 288, 1266, 1861, 2190 |
| Eco31I | GGTCTC | 1 cut(s) | 1136 |
| Eco47I | GGWCC | 1 cut(s) | 46 |
| Eco57I | CTGAAG | 3 cut(s) | 573, 1002, 1172 |
| Eco81I | CCTNAGG | 1 cut(s) | 2043 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 292 |
| EcoO109I | RGGNCCY | 1 cut(s) | 285 |
| EcoRII | CCWGG | 4 cut(s) | 301, 811, 1888, 1906 |
| EcoT14I | CCWWGG | 5 cut(s) | 71, 288, 1266, 1861, 2190 |
| ErhI | CCWWGG | 5 cut(s) | 71, 288, 1266, 1861, 2190 |
| Esp3I | CGTCTC | 1 cut(s) | 1478 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1907, 1939, 2085, 2117 |
| FaqI | GGGAC | 1 cut(s) | 59 |
| FauI | CCCGC | 1 cut(s) | 790 |
| FbaI | TGATCA | 2 cut(s) | 724, 1834 |
| FblI | GTMKAC | 1 cut(s) | 1682 |
| Fnu4HI | GCNGC | 8 cut(s) | 229, 232, 527, 740, 795, 1158, 2061, 2219 |
| FokI | GGATG | 4 cut(s) | 124, 958, 1004, 1061 |
| Fsp4HI | GCNGC | 8 cut(s) | 229, 232, 527, 740, 795, 1158, 2061, 2219 |
| FspBI | CTAG | 6 cut(s) | 486, 534, 743, 1002, 1092, 2254 |
| FspI | TGCGCA | 1 cut(s) | 1952 |
| GlaI | GCGC | 3 cut(s) | 501, 1952, 2159 |
| GluI | GCNGC | 8 cut(s) | 229, 232, 527, 740, 795, 1158, 2061, 2219 |
| GsaI | CCCAGC | 1 cut(s) | 1967 |
| GsuI | CTGGAG | 6 cut(s) | 615, 669, 1302, 1517, 1929, 1971 |
| HaeIII | GGCC | 5 cut(s) | 5, 259, 287, 1295, 1888 |
| HapII | CCGG | 2 cut(s) | 49, 769 |
| HhaI | GCGC | 3 cut(s) | 502, 1953, 2160 |
| Hin6I | GCGC | 3 cut(s) | 500, 1951, 2158 |
| HinP1I | GCGC | 3 cut(s) | 500, 1951, 2158 |
| HincII | GTYRAC | 3 cut(s) | 915, 1207, 1921 |
| HindII | GTYRAC | 3 cut(s) | 915, 1207, 1921 |
| HindIII | AAGCTT | 2 cut(s) | 1901, 2024 |
| HpaII | CCGG | 2 cut(s) | 49, 769 |
| HphI | GGTGA | 7 cut(s) | 146, 317, 731, 827, 1373, 1456, 1634 |
| Hpy166II | GTNNAC | 6 cut(s) | 578, 915, 1180, 1207, 1683, 1921 |
| Hpy8I | GTNNAC | 6 cut(s) | 578, 915, 1180, 1207, 1683, 1921 |
| HpyCH4III | ACNGT | 3 cut(s) | 370, 621, 1680 |
| HpyCH4IV | ACGT | 1 cut(s) | 2203 |
| HpyCH4V | TGCA | 3 cut(s) | 1157, 2063, 2218 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 506, 2066, 2144 |
| HpyF3I | CTNAG | 8 cut(s) | 93, 261, 399, 921, 1039, 1147, 1349, 2043 |
| HpySE526I | ACGT | 1 cut(s) | 2203 |
| HspAI | GCGC | 3 cut(s) | 500, 1951, 2158 |
| Ksp22I | TGATCA | 2 cut(s) | 724, 1834 |
| Kzo9I | GATC | 5 cut(s) | 724, 1465, 1834, 1982, 2185 |
| LguI | GCTCTTC | 2 cut(s) | 516, 2190 |
| LmnI | GCTCC | 7 cut(s) | 221, 931, 1165, 1495, 1536, 1733, 1804 |
| Lsp1109I | GCAGC | 7 cut(s) | 240, 243, 751, 806, 1169, 2047, 2230 |
| LweI | GCATC | 4 cut(s) | 325, 982, 1990, 2056 |
| MabI | ACCWGGT | 1 cut(s) | 301 |
| MaeI | CTAG | 6 cut(s) | 486, 534, 743, 1002, 1092, 2254 |
| MaeII | ACGT | 1 cut(s) | 2203 |
| MaeIII | GTNAC | 4 cut(s) | 1421, 1637, 1696, 1767 |
| MalI | GATC | 5 cut(s) | 726, 1467, 1836, 1984, 2187 |
| MboI | GATC | 5 cut(s) | 724, 1465, 1834, 1982, 2185 |
| MfeI | CAATTG | 1 cut(s) | 1389 |
| MflI | RGATCY | 1 cut(s) | 1982 |
| MhlI | GDGCHC | 1 cut(s) | 1717 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroXI | GAANNNNTTC | 3 cut(s) | 805, 1332, 2117 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 6 cut(s) | 636, 936, 1470, 1518, 1929, 2030 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 3 cut(s) | 234, 797, 2060 |
| MspCI | CTTAAG | 1 cut(s) | 935 |
| MspI | CCGG | 2 cut(s) | 49, 769 |
| MspR9I | CCNGG | 6 cut(s) | 50, 303, 769, 813, 1890, 1908 |
| MunI | CAATTG | 1 cut(s) | 1389 |
| MvaI | CCWGG | 4 cut(s) | 303, 813, 1890, 1908 |
| MvnI | CGCG | 1 cut(s) | 30 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 506, 2066, 2144 |
| NciI | CCSGG | 2 cut(s) | 50, 769 |
| NcoI | CCATGG | 1 cut(s) | 1266 |
| NdeII | GATC | 5 cut(s) | 724, 1465, 1834, 1982, 2185 |
| NlaIV | GGNNCC | 5 cut(s) | 47, 300, 1497, 1716, 1806 |
| NmuCI | GTSAC | 2 cut(s) | 1637, 1767 |
| NruI | TCGCGA | 1 cut(s) | 30 |
| NsbI | TGCGCA | 1 cut(s) | 1952 |
| NspI | RCATGY | 1 cut(s) | 1186 |
| PagI | TCATGA | 2 cut(s) | 727, 1561 |
| PciSI | GCTCTTC | 2 cut(s) | 516, 2190 |
| PdmI | GAANNNNTTC | 3 cut(s) | 805, 1332, 2117 |
| PfeI | GAWTC | 6 cut(s) | 344, 977, 1115, 1857, 2007, 2074 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 441, 1540 |
| PfoI | TCCNGGA | 1 cut(s) | 1906 |
| PkrI | GCNGC | 8 cut(s) | 230, 233, 528, 741, 796, 1159, 2062, 2220 |
| Psp6I | CCWGG | 4 cut(s) | 301, 811, 1888, 1906 |
| PspFI | CCCAGC | 1 cut(s) | 1963 |
| PspGI | CCWGG | 4 cut(s) | 301, 811, 1888, 1906 |
| PspN4I | GGNNCC | 5 cut(s) | 47, 300, 1497, 1716, 1806 |
| PspPI | GGNCC | 3 cut(s) | 46, 257, 285 |
| PstI | CTGCAG | 2 cut(s) | 1159, 2065 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1118, 1154 |
| PsuI | RGATCY | 1 cut(s) | 1982 |
| PvuII | CAGCTG | 1 cut(s) | 2060 |
| RruI | TCGCGA | 1 cut(s) | 30 |
| RsaI | GTAC | 4 cut(s) | 579, 900, 1454, 1709 |
| RsaNI | GTAC | 4 cut(s) | 578, 899, 1453, 1708 |
| SapI | GCTCTTC | 2 cut(s) | 516, 2190 |
| SaqAI | TTAA | 6 cut(s) | 636, 936, 1470, 1518, 1929, 2030 |
| SatI | GCNGC | 8 cut(s) | 229, 232, 527, 740, 795, 1158, 2061, 2219 |
| Sau3AI | GATC | 5 cut(s) | 724, 1465, 1834, 1982, 2185 |
| Sau96I | GGNCC | 3 cut(s) | 46, 257, 285 |
| ScrFI | CCNGG | 6 cut(s) | 50, 303, 769, 813, 1890, 1908 |
| SduI | GDGCHC | 1 cut(s) | 1717 |
| SexAI | ACCWGGT | 1 cut(s) | 301 |
| SfaNI | GCATC | 4 cut(s) | 325, 982, 1990, 2056 |
| SfcI | CTRYAG | 3 cut(s) | 87, 1155, 2061 |
| SinI | GGWCC | 1 cut(s) | 46 |
| SmlI | CTYRAG | 2 cut(s) | 935, 2148 |
| SmoI | CTYRAG | 2 cut(s) | 935, 2148 |
| SsiI | CCGC | 5 cut(s) | 234, 524, 527, 797, 872 |
| SspI | AATATT | 2 cut(s) | 1745, 2172 |
| SspMI | CTAG | 6 cut(s) | 486, 534, 743, 1002, 1092, 2254 |
| StyD4I | CCNGG | 6 cut(s) | 48, 301, 767, 811, 1888, 1906 |
| StyI | CCWWGG | 5 cut(s) | 71, 288, 1266, 1861, 2190 |
| TaaI | ACNGT | 3 cut(s) | 370, 621, 1680 |
| TaiI | ACGT | 1 cut(s) | 2206 |
| TaqI | TCGA | 9 cut(s) | 224, 314, 609, 1395, 1582, 1598, 1758, 1799, 2111 |
| TatI | WGTACW | 2 cut(s) | 577, 1452 |
| TauI | GCSGC | 1 cut(s) | 529 |
| TfiI | GAWTC | 6 cut(s) | 344, 977, 1115, 1857, 2007, 2074 |
| Tru1I | TTAA | 6 cut(s) | 636, 936, 1470, 1518, 1929, 2030 |
| Tru9I | TTAA | 6 cut(s) | 636, 936, 1470, 1518, 1929, 2030 |
| TscAI | CASTG | 4 cut(s) | 13, 502, 580, 693 |
| TseFI | GTSAC | 2 cut(s) | 1637, 1767 |
| TseI | GCWGC | 7 cut(s) | 228, 231, 739, 794, 1157, 2060, 2218 |
| Tsp45I | GTSAC | 2 cut(s) | 1637, 1767 |
| TspDTI | ATGAA | 9 cut(s) | 533, 744, 765, 834, 1251, 1367, 1550, 1568, 2110 |
| TspGWI | ACGGA | 4 cut(s) | 124, 135, 1841, 2179 |
| TspRI | CASTG | 4 cut(s) | 13, 502, 580, 693 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 441, 1540 |
| Vha464I | CTTAAG | 1 cut(s) | 935 |
| VpaK11BI | GGWCC | 1 cut(s) | 46 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 292 |
| XapI | RAATTY | 4 cut(s) | 613, 828, 867, 1829 |
| XceI | RCATGY | 1 cut(s) | 1186 |
| XmiI | GTMKAC | 1 cut(s) | 1682 |
| XmnI | GAANNNNTTC | 3 cut(s) | 805, 1332, 2117 |
| XspI | CTAG | 6 cut(s) | 486, 534, 743, 1002, 1092, 2254 |