Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8378327.1

Orthogroup ID

OG0006475

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1110

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8378327.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 478 bp

atgtggtcactaggttgtatcatggctgagctgttatcaaaggagccgctttttaatgggaaaacggaatttgaacaacttgacaaaatttttaagatacttggcacaccaaatgagactatttggcctgggttttccaagcttcctggagtaaaggtcaactttgttaagcatcagtataaccttttgcgcaagaagttcccagctacttcgtttactggatctccagttctcactgaagctggatttgatttgttgaataagcttctaacttatgaccctgagaagagaatttctgctgatgctgctctgaatcatgagtggtttcgcgaagtccctcttcccaagacgaaagatttcatgcccacgtttcctgcccaacatgctcaagacaggcgctcacggagaattttgaagagtccagatcccttggaagagcaacggagaaaggagttgcaagggggtataggaactgggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

159

Amino Acids

18.17

Weight (kDa)

9.38

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67580 AT1G67580
fragaria_vesca	FvH4_4g24200
malus_domestica	MD13G1113400.v1.1 MD16G1112700.v1.1
prunus_persica	Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1
pyrus_communis	pycom13g09880 pycom16g09530
rosa_chinensis	RchiOBHm_Chr4g0431041
rosa_laevigata	RLG00000006930
rosa_multiflora	Rmu_co8378327.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372660
rosa_rugosa	Rorug04G0247500 Rorug04G0247600 Rorug04G0247700.1 Rorug04G0247800
rosa_samantha	Rh4AG304400 Rh4BG311600 Rh4CG327900 Rh4DG308100
rosa_wichuraiana	Rw4G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	191
AccII	CGCG	1 cut(s)	330
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	2 cut(s)	229, 419
AcsI	RAATTY	4 cut(s)	68, 87, 291, 408
AcuI	CTGAAG	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	74, 259, 415
AjnI	CCWGG	2 cut(s)	127, 145
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	5 cut(s)	31, 142, 206, 242, 265
AluI	AGCT	5 cut(s)	31, 142, 206, 242, 265
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	2 cut(s)	229, 419
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	4 cut(s)	68, 87, 291, 408
Asp700I	GAANNNNTTC	1 cut(s)	356
AspLEI	GCGC	2 cut(s)	192, 399
BbvI	GCAGC	1 cut(s)	292
BciT130I	CCWGG	2 cut(s)	129, 147
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	11
BfoI	RGCGCY	1 cut(s)	400
BisI	GCNGC	2 cut(s)	47, 306
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	2 cut(s)	48, 307
Bme1390I	CCNGG	2 cut(s)	129, 147
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	129, 147
BmsI	GCATC	2 cut(s)	181, 292
BpmI	CTGGAG	2 cut(s)	168, 210
Bpu1102I	GCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	128, 429
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 208, 238
Bse1I	ACTGG	3 cut(s)	223, 227, 478
BseBI	CCWGG	2 cut(s)	129, 147
BseDI	CCNNGG	2 cut(s)	128, 429
BseMII	CTCAG	2 cut(s)	18, 273
BseNI	ACTGG	3 cut(s)	223, 227, 478
BseXI	GCAGC	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	221, 424
Bsp1720I	GCTNAGC	1 cut(s)	27
Bsp68I	TCGCGA	1 cut(s)	330
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	19, 274
BspFNI	CGCG	1 cut(s)	330
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	229, 419
BspQI	GCTCTTC	1 cut(s)	429
BsrI	ACTGG	3 cut(s)	223, 227, 478
BssECI	CCNNGG	2 cut(s)	128, 429
BssMI	GATC	2 cut(s)	221, 424
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	129, 147
Bst6I	CTCTTC	4 cut(s)	281, 345, 410, 429
BstDEI	CTNAG	2 cut(s)	27, 282
BstFNI	CGCG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	2 cut(s)	192, 399
BstKTI	GATC	2 cut(s)	224, 427
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	2 cut(s)	221, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 383
BstNI	CCWGG	2 cut(s)	129, 147
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	127, 145
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	292
BstX2I	RGATCY	2 cut(s)	221, 424
BstYI	RGATCY	2 cut(s)	221, 424
BsuRI	GGCC	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	234
BtuMI	TCGCGA	1 cut(s)	330
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	2 cut(s)	192, 399
CviAII	CATG	4 cut(s)	22, 317, 361, 383
CviJI	RGCY	8 cut(s)	26, 31, 46, 127, 142, 206, 242, 265
CviKI_1	RGCY	8 cut(s)	26, 31, 46, 127, 142, 206, 242, 265
DdeI	CTNAG	2 cut(s)	27, 282
DpnI	GATC	2 cut(s)	223, 426
DpnII	GATC	2 cut(s)	221, 424
Eam1104I	CTCTTC	4 cut(s)	281, 345, 410, 429
EarI	CTCTTC	4 cut(s)	281, 345, 410, 429
Eco130I	CCWWGG	1 cut(s)	429
Eco57I	CTGAAG	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	127, 145
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	4 cut(s)	25, 320, 364, 386
FaiI	YATR	7 cut(s)	23, 180, 276, 318, 362, 384, 467
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 324, 356
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	4 cut(s)	21, 316, 360, 382
Fnu4HI	GCNGC	2 cut(s)	47, 306
Fsp4HI	GCNGC	2 cut(s)	47, 306
FspBI	CTAG	1 cut(s)	11
FspI	TGCGCA	1 cut(s)	191
GlaI	GCGC	2 cut(s)	191, 398
GluI	GCNGC	2 cut(s)	47, 306
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	2 cut(s)	168, 210
HaeII	RGCGCY	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	127
HhaI	GCGC	2 cut(s)	192, 399
Hin1II	CATG	4 cut(s)	25, 320, 364, 386
Hin6I	GCGC	2 cut(s)	190, 397
HinP1I	GCGC	2 cut(s)	190, 397
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	2 cut(s)	140, 263
HinfI	GANTC	2 cut(s)	313, 418
Hpy166II	GTNNAC	2 cut(s)	160, 216
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	4 cut(s)	317, 329, 389, 422
Hpy8I	GTNNAC	2 cut(s)	160, 216
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	1 cut(s)	457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 383
HpyF3I	CTNAG	2 cut(s)	27, 282
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	4 cut(s)	25, 320, 364, 386
HspAI	GCGC	2 cut(s)	190, 397
Kzo9I	GATC	2 cut(s)	221, 424
LguI	GCTCTTC	1 cut(s)	429
LmnI	GCTCC	1 cut(s)	43
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	181, 292
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	2 cut(s)	223, 426
MboI	GATC	2 cut(s)	221, 424
MboII	GAAGA	4 cut(s)	298, 332, 427, 446
MflI	RGATCY	2 cut(s)	221, 424
MluCI	AATT	4 cut(s)	68, 87, 291, 408
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	1 cut(s)	348
MroXI	GAANNNNTTC	1 cut(s)	356
MseI	TTAA	3 cut(s)	54, 93, 168
MspR9I	CCNGG	2 cut(s)	129, 147
MvaI	CCWGG	2 cut(s)	129, 147
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	305, 383
NdeII	GATC	2 cut(s)	221, 424
NlaIII	CATG	4 cut(s)	25, 320, 364, 386
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	6
NruI	TCGCGA	1 cut(s)	330
NsbI	TGCGCA	1 cut(s)	191
NspI	RCATGY	1 cut(s)	386
PagI	TCATGA	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	313
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	48, 307
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
Psp6I	CCWGG	2 cut(s)	127, 145
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	2 cut(s)	127, 145
PspN4I	GGNNCC	1 cut(s)	45
PsuI	RGATCY	2 cut(s)	221, 424
RruI	TCGCGA	1 cut(s)	330
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	54, 93, 168
SatI	GCNGC	2 cut(s)	47, 306
Sau3AI	GATC	2 cut(s)	221, 424
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	2 cut(s)	129, 147
SetI	ASST	9 cut(s)	16, 33, 144, 159, 186, 208, 244, 267, 371
SfaNI	GCATC	2 cut(s)	181, 292
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
Sse9I	AATT	4 cut(s)	68, 87, 291, 408
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	2 cut(s)	127, 145
StyI	CCWWGG	1 cut(s)	429
TaiI	ACGT	1 cut(s)	371
TasI	AATT	4 cut(s)	68, 87, 291, 408
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	3 cut(s)	54, 93, 168
Tru9I	TTAA	3 cut(s)	54, 93, 168
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	349
TspGWI	ACGGA	3 cut(s)	80, 418, 457
TspRI	CASTG	1 cut(s)	241
XapI	RAATTY	4 cut(s)	68, 87, 291, 408
XceI	RCATGY	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.