Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006475

Physical Location & Seq

Genomic Coordinates Reverse (-)

54052448 .. 54059896

Gene Structure 7449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2265 bp

ATGGCGGCTGGAAGACATGGGGGTTATCGCGAAAACGAGTTCAGGGAGCGAGAGTCCAGTTTCGAATTGCCGCGGAGGGATTTAGCTTCTTCTAAGGAGGACTTGGAGCGGATGAGGAATGGGGATCCTGATGTTCACAAGGGCCGCGTTCGGGATTTGAGAGATAGAATCAGGGCTAGGTCCAAGGAGAGGGCAGTGGCTAATGGTGGATACCGATCCTCTTCGAGTAGGAGTGATTCCGGCAGCAGTGGCGGTGCTGGGCTTGTAGCCGGTCGCGGGCCTAAGCCCTGTGGGTTTTCTGCCAAGGCATTGGATAGGGAACCTGGTGAATTGTCAAGTGAGAGCGGGTCTGATGATGCCATTGAATCCCGGTCGCAGGGCAGAGATGTAGAGGTTATGAAGGTGGTGGAGAATGGAAGTCAGACTCCGAAGGAGAGGAAAAGGAAGTTTTCGCCTATTGTGTGGGATAGAGATGATAAAGAAGGGAGTAATTCGTCCAAGACTAGGATTACAGCAGTGGCAGCAGCTCCTCCTCCACCCCCACTGGCTAGGGTGTCTCGTCAGTCTCCTAATGTTACTTCAGATAGCAGGGTACAAATATGTTCAGCTAAAATTGATGAAGCTGACAATTTACAACCTTCCTCTCCGGTTAAGTCGTCTCCTGTGGCACCTGAGACTGTTAGCAATGGTGTATATGAGTCTCCGGTAGAGTTGTCTTCACCAGATCAGCATTTAGGGGATGTTCGTGAAGCAGAGCAGCTAGAAGATGAAGATTATGTTCCAACCCGAAATATATCATCTTCAAGATGGGCAGCAGGAAATAATTCTCCTGGTGATGAAGGTGGAATTTCAGAAAACGAGGAAATTCCTAAAAGGAGGAGGAAAATGCCTCGTTTAGGATCAGTGGAAAACAGAGTACGCAACAGCTCATTGACTCCGGAGCTAGGGGAGCTTAAGAAAGATGGGTCTGAACGAGGTAGGGCGAGATCATCCGAGTCTGATGAACGAGATGCCCTTGGAAGGTCTAGTGGGGATGACTATCCTGATAATGACTCAGAGAGGGATGACTACATGGATGTTGACAAGGATAATGGTAATAATGATAGTGTTAGTCGTTATGATACTAGTTCAGAGGATGAGCTTGATTCTCCCGAGACACCAGAGCCTGCAGCTCCTCCACAAAGAAGTGTAAACATGCTTCAGGGTTGTAGAAGCGTTGATGAGTTCGAGAGACTAAACAAGATAGATGAGGGCACTTATGGTGTTGTATATCGGGCCCAAGATAAGAGAACTGGTGAAATTGTGGCATTGAAGAAGGTAAAGATGGAGAAGGAAAGAGAAGGTTTTCCATTAACATCTCTGAGGGAAATAAACATTCTCCTTTCTTTTCATCATCCATCAATTGTCGATGTTAAGGAAGTAGTGGTGGGCAGTAACCTTGATAGCATTTTTATGGTGATGGAATACATGGAGCATGATCTTAAAGCACTCATGGAGACAATGAAGCAGCCATTTAGTCCGAGTGAAGTTAAATGCCTTATGCTCCAGCTATTGGAAGGTGTCAAATATCTTCATGATAATTGGGTGCTTCATCGGGATTTGAAGACATCTAACCTGCTTTTGAATAATCGGGGTGAGTTGAAGATCTGTGACTTTGGGTTGGCTCGTCAATATGGAAGTCCTTTGAAACCGTATACTCATTTGGTGGTTACTCTTTGGTACAGGGCGCCGGAACTTCTGTTGGGAGCAAGAGAATATTCAACGGCAATCGATATGTGGTCACTAGGTTGTATCATGGCTGAGATGTTATCAAAGGAGCCGCTTTTTAATGGGAAAACTGAATTTGAACAACTTGACAAAATTTTTAAGATACTTGGCACACCAAATGAGACTATTTGGCCTGGGTTTTCCAAGCTTCCTGGAGTAAAGGTCAACTTTGTTAAGCATCAGTATAACCTTTTGCGCAAGAAGTTCCCAGCTACTTCATTTACTGGATCTCCAGTTCTTACTGAAGCTGGATTTGATTTGTTGAATAAGCTTCTAACTTATGACCCTGAGAAGAGAATTTCTGCTGATGCTGCTCTGAATCATGAGTGGTTTCGCGAAGTCCCTCTTCCCAAGACGAAAGATTTCATGCCCACGTTTCCTGCTCAACATGCTCAAGACAGGCGCTCACGAAGAATGTTGAAGAGTCCAGATCCCTTGGAAGAGCAACGGAGAAAGGAGTTGCAAGGGGGTATAGGAACCGGGGGTGTTTTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

754

Amino Acids

84.32

Weight (kDa)

5.8

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	409 - 700	1.7e-72	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	412 - 607	1.6e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67580 AT1G67580
fragaria_vesca	FvH4_4g24200
malus_domestica	MD13G1113400.v1.1 MD16G1112700.v1.1
prunus_persica	Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1
pyrus_communis	pycom13g09880 pycom16g09530
rosa_chinensis	RchiOBHm_Chr4g0431041
rosa_laevigata	RLG00000006930
rosa_multiflora	Rmu_co8378327.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372660
rosa_rugosa	Rorug04G0247500 Rorug04G0247600 Rorug04G0247700.1 Rorug04G0247800
rosa_samantha	Rh4AG304400 Rh4BG311600 Rh4CG327900 Rh4DG308100
rosa_wichuraiana	Rw4G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1964
Acc36I	ACCTGC	1 cut(s)	1623
AccB1I	GGYRCC	2 cut(s)	667, 1726
AccB7I	CCANNNNNTGG	1 cut(s)	1552
AccBSI	CCGCTC	2 cut(s)	109, 345
AccI	GTMKAC	1 cut(s)	1694
AccII	CGCG	5 cut(s)	30, 73, 147, 276, 2103
AccIII	TCCGGA	1 cut(s)	937
AciI	CCGC	9 cut(s)	5, 71, 73, 109, 145, 252, 276, 345, 1820
AclWI	GGATC	6 cut(s)	119, 132, 210, 907, 2002, 2192
AcsI	RAATTY	5 cut(s)	846, 864, 1841, 1860, 2064
AcuI	CTGAAG	3 cut(s)	564, 1184, 2031
AcyI	GRCGYC	1 cut(s)	1727
AfaI	GTAC	3 cut(s)	594, 918, 1721
AfiI	CCNNNNNNNGG	9 cut(s)	151, 189, 276, 376, 504, 896, 944, 1020, 1552
AflII	CTTAAG	1 cut(s)	953
AhlI	ACTAGT	1 cut(s)	1124
AjnI	CCWGG	4 cut(s)	322, 829, 1900, 1918
AloI	GAACNNNNNNTCC	2 cut(s)	1986, 2018
Alw26I	GTCTC	9 cut(s)	561, 570, 663, 668, 705, 1148, 1225, 1490, 1883
AlwI	GGATC	6 cut(s)	119, 132, 210, 907, 2002, 2192
AlwNI	CAGNNNCTG	1 cut(s)	1166
Ama87I	CYCGRG	1 cut(s)	1151
Aor13HI	TCCGGA	1 cut(s)	937
AoxI	GGCC	4 cut(s)	142, 278, 1275, 1898
ApaI	GGGCCC	1 cut(s)	1279
ApeKI	GCWGC	8 cut(s)	243, 521, 524, 757, 812, 1169, 1507, 2078
ApoI	RAATTY	5 cut(s)	846, 864, 1841, 1860, 2064
Asp700I	GAANNNNTTC	3 cut(s)	823, 1344, 2129
AspLEI	GCGC	3 cut(s)	1729, 1965, 2172
AspS9I	GGNCC	5 cut(s)	142, 180, 278, 1275, 1276
AsuC2I	CCSGG	2 cut(s)	370, 2248
AsuHPI	GGTGA	6 cut(s)	338, 711, 845, 1307, 1468, 1646
AsuII	TTCGAA	1 cut(s)	63
AvaI	CYCGRG	1 cut(s)	1151
AvaII	GGWCC	1 cut(s)	180
BaeGI	GKGCMC	2 cut(s)	1256, 1279
BamHI	GGATCC	1 cut(s)	124
BanI	GGYRCC	2 cut(s)	667, 1726
BanII	GRGCYC	1 cut(s)	1279
BarI	GAAGNNNNNNTAC	2 cut(s)	1182, 1214
BbsI	GAAGAC	3 cut(s)	19, 708, 1610
BbvI	GCAGC	8 cut(s)	255, 533, 536, 769, 824, 1181, 1519, 2065
BccI	CCATC	5 cut(s)	801, 956, 1318, 1405, 1453
BceAI	ACGGC	1 cut(s)	1779
BciT130I	CCWGG	4 cut(s)	324, 831, 1902, 1920
BciVI	GTATCC	1 cut(s)	203
BcnI	CCSGG	2 cut(s)	370, 2248
BcoDI	GTCTC	9 cut(s)	561, 570, 663, 668, 705, 1148, 1225, 1490, 1883
BcuI	ACTAGT	1 cut(s)	1124
BfaI	CTAG	9 cut(s)	177, 504, 549, 761, 944, 1026, 1125, 1784, 2263
BfmI	CTRYAG	1 cut(s)	1167
BfoI	RGCGCY	2 cut(s)	1730, 2173
BfrI	CTTAAG	1 cut(s)	953
BfuAI	ACCTGC	1 cut(s)	1623
BfuI	GTATCC	1 cut(s)	203
BglII	AGATCT	1 cut(s)	1644
Bme1390I	CCNGG	6 cut(s)	324, 370, 831, 1902, 1920, 2248
Bme18I	GGWCC	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	1151
BmgT120I	GGNCC	5 cut(s)	142, 180, 278, 1275, 1276
BmiI	GGNNCC	7 cut(s)	126, 321, 669, 1277, 1728, 1818, 2245
BmrFI	CCNGG	6 cut(s)	324, 370, 831, 1902, 1920, 2248
BmsI	GCATC	4 cut(s)	346, 1000, 1954, 2065
BpiI	GAAGAC	3 cut(s)	19, 708, 1610
BpmI	CTGGAG	3 cut(s)	1529, 1941, 1983
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	2145
BpuMI	CCSGG	2 cut(s)	370, 2248
Bsa29I	ATCGAT	1 cut(s)	1770
BsaBI	GATNNNNATC	2 cut(s)	214, 1038
BsaHI	GRCGYC	1 cut(s)	1727
BsaJI	CCNNGG	7 cut(s)	71, 183, 303, 1015, 1901, 2202, 2247
BsaWI	WCCGGW	3 cut(s)	646, 703, 937
BsaXI	ACNNNNNCTCC	6 cut(s)	38, 68, 1914, 1944, 1981, 2011
Bsc4I	CCNNNNNNNGG	9 cut(s)	151, 189, 276, 376, 504, 896, 944, 1020, 1552
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	5 cut(s)	57, 549, 1297, 1996, 2000
Bse3DI	GCAATG	1 cut(s)	691
Bse8I	GATNNNNATC	2 cut(s)	214, 1038
BseAI	TCCGGA	1 cut(s)	937
BseBI	CCWGG	4 cut(s)	324, 831, 1902, 1920
BseCI	ATCGAT	1 cut(s)	1770
BseDI	CCNNGG	7 cut(s)	71, 183, 303, 1015, 1901, 2202, 2247
BseGI	GGATG	8 cut(s)	117, 745, 989, 1039, 1069, 1081, 1141, 1393
BseJI	GATNNNNATC	2 cut(s)	214, 1038
BseLI	CCNNNNNNNGG	9 cut(s)	151, 189, 276, 376, 504, 896, 944, 1020, 1552
BseMI	GCAATG	1 cut(s)	691
BseMII	CTCAG	5 cut(s)	663, 1068, 1352, 1791, 2046
BseNI	ACTGG	5 cut(s)	57, 549, 1297, 1996, 2000
BseRI	GAGGAG	4 cut(s)	519, 522, 892, 1164
BseSI	GKGCMC	2 cut(s)	1256, 1279
BseXI	GCAGC	8 cut(s)	255, 533, 536, 769, 824, 1181, 1519, 2065
BseYI	CCCAGC	2 cut(s)	257, 1975
Bsh1236I	CGCG	5 cut(s)	30, 73, 147, 276, 2103
Bsh1285I	CGRYCG	2 cut(s)	274, 374
BshFI	GGCC	4 cut(s)	144, 280, 1277, 1900
BshNI	GGYRCC	2 cut(s)	667, 1726
BshVI	ATCGAT	1 cut(s)	1770
BsiEI	CGRYCG	2 cut(s)	274, 374
BsiHKCI	CYCGRG	1 cut(s)	1151
BsiSI	CCGG	8 cut(s)	240, 270, 370, 647, 704, 938, 1730, 2247
BslFI	GGGAC	1 cut(s)	2093
BslI	CCNNNNNNNGG	9 cut(s)	151, 189, 276, 376, 504, 896, 944, 1020, 1552
BsmAI	GTCTC	9 cut(s)	561, 570, 663, 668, 705, 1148, 1225, 1490, 1883
BsmBI	CGTCTC	1 cut(s)	663
BsmFI	GGGAC	1 cut(s)	2093
BsnI	GGCC	4 cut(s)	144, 280, 1277, 1900
BsoBI	CYCGRG	1 cut(s)	1151
Bsp119I	TTCGAA	1 cut(s)	63
Bsp120I	GGGCCC	1 cut(s)	1275
Bsp1286I	GDGCHC	2 cut(s)	1256, 1279
Bsp13I	TCCGGA	1 cut(s)	937
Bsp143I	GATC	9 cut(s)	124, 215, 724, 899, 986, 1477, 1644, 1994, 2197
Bsp68I	TCGCGA	2 cut(s)	30, 2103
BspACI	CCGC	9 cut(s)	5, 71, 73, 109, 145, 252, 276, 345, 1820
BspANI	GGCC	4 cut(s)	144, 280, 1277, 1900
BspCNI	CTCAG	5 cut(s)	664, 1067, 1353, 1792, 2047
BspDI	ATCGAT	1 cut(s)	1770
BspEI	TCCGGA	1 cut(s)	937
BspFNI	CGCG	5 cut(s)	30, 73, 147, 276, 2103
BspHI	TCATGA	2 cut(s)	1573, 2089
BspLI	GGNNCC	7 cut(s)	126, 321, 669, 1277, 1728, 1818, 2245
BspMAI	CTGCAG	1 cut(s)	1171
BspMI	ACCTGC	1 cut(s)	1623
BspPI	GGATC	6 cut(s)	119, 132, 210, 907, 2002, 2192
BspQI	GCTCTTC	1 cut(s)	2202
BspT104I	TTCGAA	1 cut(s)	63
BspT107I	GGYRCC	2 cut(s)	667, 1726
BspTI	CTTAAG	1 cut(s)	953
BsrBI	CCGCTC	2 cut(s)	109, 345
BsrDI	GCAATG	1 cut(s)	691
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	5 cut(s)	57, 549, 1297, 1996, 2000
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	7 cut(s)	71, 183, 303, 1015, 1901, 2202, 2247
BssMI	GATC	9 cut(s)	124, 215, 724, 899, 986, 1477, 1644, 1994, 2197
BssNAI	GTATAC	1 cut(s)	1695
BssNI	GRCGYC	1 cut(s)	1727
BssT1I	CCWWGG	4 cut(s)	183, 303, 1015, 2202
Bst1107I	GTATAC	1 cut(s)	1695
Bst2UI	CCWGG	4 cut(s)	324, 831, 1902, 1920
Bst4CI	ACNGT	2 cut(s)	679, 1692
Bst6I	CTCTTC	5 cut(s)	226, 2054, 2118, 2183, 2202
BstACI	GRCGYC	1 cut(s)	1727
BstAFI	CTTAAG	1 cut(s)	953
BstBI	TTCGAA	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	278, 1167
BstDEI	CTNAG	7 cut(s)	93, 282, 672, 1054, 1361, 1800, 2055
BstDSI	CCRYGG	1 cut(s)	71
BstENI	CCTNNNNNAGG	1 cut(s)	894
BstF5I	GGATG	8 cut(s)	117, 745, 989, 1039, 1069, 1081, 1141, 1393
BstFNI	CGCG	5 cut(s)	30, 73, 147, 276, 2103
BstH2I	RGCGCY	2 cut(s)	1730, 2173
BstHHI	GCGC	3 cut(s)	1729, 1965, 2172
BstKTI	GATC	9 cut(s)	127, 218, 727, 902, 989, 1480, 1647, 1997, 2200
BstMAI	GTCTC	9 cut(s)	561, 570, 663, 668, 705, 1148, 1225, 1490, 1883
BstMBI	GATC	9 cut(s)	124, 215, 724, 899, 986, 1477, 1644, 1994, 2197
BstMCI	CGRYCG	2 cut(s)	274, 374
BstMWI	GCNNNNNNNGC	5 cut(s)	249, 521, 949, 2078, 2156
BstNI	CCWGG	4 cut(s)	324, 831, 1902, 1920
BstNSI	RCATGY	2 cut(s)	1198, 2159
BstSCI	CCNGG	6 cut(s)	322, 368, 829, 1900, 1918, 2246
BstSFI	CTRYAG	1 cut(s)	1167
BstSLI	GKGCMC	2 cut(s)	1256, 1279
BstUI	CGCG	5 cut(s)	30, 73, 147, 276, 2103
BstV1I	GCAGC	8 cut(s)	255, 533, 536, 769, 824, 1181, 1519, 2065
BstV2I	GAAGAC	3 cut(s)	19, 708, 1610
BstX2I	RGATCY	4 cut(s)	124, 1644, 1994, 2197
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	4 cut(s)	124, 1644, 1994, 2197
BstZ17I	GTATAC	1 cut(s)	1695
Bsu15I	ATCGAT	1 cut(s)	1770
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	4 cut(s)	144, 280, 1277, 1900
BsuTUI	ATCGAT	1 cut(s)	1770
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	8 cut(s)	117, 745, 989, 1039, 1069, 1081, 1141, 1393
BtsI	GCAGTG	3 cut(s)	201, 253, 522
BtsIMutI	CAGTG	5 cut(s)	201, 253, 522, 542, 909
BtuMI	TCGCGA	2 cut(s)	30, 2103
BveI	ACCTGC	1 cut(s)	1623
Cac8I	GCNNGC	2 cut(s)	278, 1167
CaiI	CAGNNNCTG	1 cut(s)	1166
CciI	TCATGA	2 cut(s)	1573, 2089
CfoI	GCGC	3 cut(s)	1729, 1965, 2172
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	5 cut(s)	142, 180, 278, 1275, 1276
Cfr42I	CCGCGG	1 cut(s)	74
ClaI	ATCGAT	1 cut(s)	1770
CsiI	ACCWGGT	1 cut(s)	322
Csp6I	GTAC	3 cut(s)	593, 917, 1720
CviQI	GTAC	3 cut(s)	593, 917, 1720
DdeI	CTNAG	7 cut(s)	93, 282, 672, 1054, 1361, 1800, 2055
DinI	GGCGCC	1 cut(s)	1728
DpnI	GATC	9 cut(s)	126, 217, 726, 901, 988, 1479, 1646, 1996, 2199
DpnII	GATC	9 cut(s)	124, 215, 724, 899, 986, 1477, 1644, 1994, 2197
Eam1104I	CTCTTC	5 cut(s)	226, 2054, 2118, 2183, 2202
EarI	CTCTTC	5 cut(s)	226, 2054, 2118, 2183, 2202
Eco130I	CCWWGG	4 cut(s)	183, 303, 1015, 2202
Eco24I	GRGCYC	1 cut(s)	1279
Eco47I	GGWCC	1 cut(s)	180
Eco57I	CTGAAG	3 cut(s)	564, 1184, 2031
Eco88I	CYCGRG	1 cut(s)	1151
EcoNI	CCTNNNNNAGG	1 cut(s)	894
EcoRII	CCWGG	4 cut(s)	322, 829, 1900, 1918
EcoT14I	CCWWGG	4 cut(s)	183, 303, 1015, 2202
EcoT38I	GRGCYC	1 cut(s)	1279
EgeI	GGCGCC	1 cut(s)	1728
EheI	GGCGCC	1 cut(s)	1728
ErhI	CCWWGG	4 cut(s)	183, 303, 1015, 2202
Esp3I	CGTCTC	1 cut(s)	663
FalI	AAGNNNNNCTT	6 cut(s)	86, 118, 1919, 1951, 2097, 2129
FaqI	GGGAC	1 cut(s)	2093
FauI	CCCGC	2 cut(s)	269, 338
FblI	GTMKAC	1 cut(s)	1694
FokI	GGATG	8 cut(s)	124, 752, 976, 1046, 1076, 1088, 1148, 1380
FriOI	GRGCYC	1 cut(s)	1279
FspBI	CTAG	9 cut(s)	177, 504, 549, 761, 944, 1026, 1125, 1784, 2263
FspI	TGCGCA	1 cut(s)	1964
GlaI	GCGC	3 cut(s)	1728, 1964, 2171
GsaI	CCCAGC	2 cut(s)	261, 1979
GsuI	CTGGAG	3 cut(s)	1529, 1941, 1983
HaeII	RGCGCY	2 cut(s)	1730, 2173
HaeIII	GGCC	4 cut(s)	144, 280, 1277, 1900
HapII	CCGG	8 cut(s)	240, 270, 370, 647, 704, 938, 1730, 2247
HhaI	GCGC	3 cut(s)	1729, 1965, 2172
Hin1I	GRCGYC	1 cut(s)	1727
Hin6I	GCGC	3 cut(s)	1727, 1963, 2170
HinP1I	GCGC	3 cut(s)	1727, 1963, 2170
HincII	GTYRAC	2 cut(s)	1081, 1933
HindII	GTYRAC	2 cut(s)	1081, 1933
HindIII	AAGCTT	2 cut(s)	1913, 2036
HpaII	CCGG	8 cut(s)	240, 270, 370, 647, 704, 938, 1730, 2247
HphI	GGTGA	6 cut(s)	338, 711, 845, 1307, 1468, 1646
Hpy166II	GTNNAC	5 cut(s)	136, 1081, 1192, 1695, 1933
Hpy8I	GTNNAC	5 cut(s)	136, 1081, 1192, 1695, 1933
HpyCH4III	ACNGT	2 cut(s)	679, 1692
HpyCH4IV	ACGT	1 cut(s)	2141
HpyCH4V	TGCA	2 cut(s)	1169, 2230
HpyF10VI	GCNNNNNNNGC	5 cut(s)	249, 521, 949, 2078, 2156
HpyF3I	CTNAG	7 cut(s)	93, 282, 672, 1054, 1361, 1800, 2055
HpySE526I	ACGT	1 cut(s)	2141
Hsp92I	GRCGYC	1 cut(s)	1727
HspAI	GCGC	3 cut(s)	1727, 1963, 2170
KasI	GGCGCC	1 cut(s)	1726
Kpn2I	TCCGGA	1 cut(s)	937
KspI	CCGCGG	1 cut(s)	74
Kzo9I	GATC	9 cut(s)	124, 215, 724, 899, 986, 1477, 1644, 1994, 2197
LguI	GCTCTTC	1 cut(s)	2202
Lsp1109I	GCAGC	8 cut(s)	255, 533, 536, 769, 824, 1181, 1519, 2065
LweI	GCATC	4 cut(s)	346, 1000, 1954, 2065
MabI	ACCWGGT	1 cut(s)	322
MaeI	CTAG	9 cut(s)	177, 504, 549, 761, 944, 1026, 1125, 1784, 2263
MaeII	ACGT	1 cut(s)	2141
MaeIII	GTNAC	5 cut(s)	574, 1433, 1649, 1708, 1779
MalI	GATC	9 cut(s)	126, 217, 726, 901, 988, 1479, 1646, 1996, 2199
MbiI	CCGCTC	2 cut(s)	109, 345
MboI	GATC	9 cut(s)	124, 215, 724, 899, 986, 1477, 1644, 1994, 2197
MfeI	CAATTG	1 cut(s)	1401
MflI	RGATCY	4 cut(s)	124, 1644, 1994, 2197
MhlI	GDGCHC	2 cut(s)	1256, 1279
Mly113I	GGCGCC	1 cut(s)	1727
MlyI	GAGTC	7 cut(s)	62, 418, 707, 928, 1004, 1046, 2200
MmeI	TCCRAC	1 cut(s)	806
MroI	TCCGGA	1 cut(s)	937
MroXI	GAANNNNTTC	3 cut(s)	823, 1344, 2129
MseI	TTAA	9 cut(s)	651, 954, 1352, 1413, 1482, 1530, 1827, 1866, 1941
MslI	CAYNNNNRTG	1 cut(s)	1451
MspA1I	CMGCKG	1 cut(s)	73
MspCI	CTTAAG	1 cut(s)	953
MspI	CCGG	8 cut(s)	240, 270, 370, 647, 704, 938, 1730, 2247
MspR9I	CCNGG	6 cut(s)	324, 370, 831, 1902, 1920, 2248
MunI	CAATTG	1 cut(s)	1401
MvaI	CCWGG	4 cut(s)	324, 831, 1902, 1920
MvnI	CGCG	5 cut(s)	30, 73, 147, 276, 2103
MwoI	GCNNNNNNNGC	5 cut(s)	249, 521, 949, 2078, 2156
NarI	GGCGCC	1 cut(s)	1727
NciI	CCSGG	2 cut(s)	370, 2248
NdeII	GATC	9 cut(s)	124, 215, 724, 899, 986, 1477, 1644, 1994, 2197
NlaIV	GGNNCC	7 cut(s)	126, 321, 669, 1277, 1728, 1818, 2245
NmuCI	GTSAC	2 cut(s)	1649, 1779
NruI	TCGCGA	2 cut(s)	30, 2103
NsbI	TGCGCA	1 cut(s)	1964
NspI	RCATGY	2 cut(s)	1198, 2159
NspV	TTCGAA	1 cut(s)	63
PagI	TCATGA	2 cut(s)	1573, 2089
PciSI	GCTCTTC	1 cut(s)	2202
PdmI	GAANNNNTTC	3 cut(s)	823, 1344, 2129
PfeI	GAWTC	5 cut(s)	168, 236, 365, 1145, 2086
PflMI	CCANNNNNTGG	1 cut(s)	1552
PfoI	TCCNGGA	1 cut(s)	1918
PleI	GAGTC	7 cut(s)	61, 418, 706, 928, 1003, 1046, 2199
PluTI	GGCGCC	1 cut(s)	1730
PpsI	GAGTC	7 cut(s)	61, 418, 706, 928, 1003, 1046, 2199
Psp6I	CCWGG	4 cut(s)	322, 829, 1900, 1918
PspFI	CCCAGC	2 cut(s)	257, 1975
PspGI	CCWGG	4 cut(s)	322, 829, 1900, 1918
PspN4I	GGNNCC	7 cut(s)	126, 321, 669, 1277, 1728, 1818, 2245
PspOMI	GGGCCC	1 cut(s)	1275
PspPI	GGNCC	5 cut(s)	142, 180, 278, 1275, 1276
PstI	CTGCAG	1 cut(s)	1171
PstNI	CAGNNNCTG	1 cut(s)	1166
PsuI	RGATCY	4 cut(s)	124, 1644, 1994, 2197
RruI	TCGCGA	2 cut(s)	30, 2103
RsaI	GTAC	3 cut(s)	594, 918, 1721
RsaNI	GTAC	3 cut(s)	593, 917, 1720
RseI	CAYNNNNRTG	1 cut(s)	1451
SacII	CCGCGG	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	2202
SaqAI	TTAA	9 cut(s)	651, 954, 1352, 1413, 1482, 1530, 1827, 1866, 1941
Sau3AI	GATC	9 cut(s)	124, 215, 724, 899, 986, 1477, 1644, 1994, 2197
Sau96I	GGNCC	5 cut(s)	142, 180, 278, 1275, 1276
SchI	GAGTC	7 cut(s)	62, 418, 707, 928, 1004, 1046, 2200
ScrFI	CCNGG	6 cut(s)	324, 370, 831, 1902, 1920, 2248
SduI	GDGCHC	2 cut(s)	1256, 1279
SexAI	ACCWGGT	1 cut(s)	322
SfaNI	GCATC	4 cut(s)	346, 1000, 1954, 2065
SfcI	CTRYAG	1 cut(s)	1167
SfoI	GGCGCC	1 cut(s)	1728
Sfr303I	CCGCGG	1 cut(s)	74
SfuI	TTCGAA	1 cut(s)	63
SgrBI	CCGCGG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	1451
SmlI	CTYRAG	2 cut(s)	953, 2160
SmoI	CTYRAG	2 cut(s)	953, 2160
SpeI	ACTAGT	1 cut(s)	1124
SsiI	CCGC	9 cut(s)	5, 71, 73, 109, 145, 252, 276, 345, 1820
SspDI	GGCGCC	1 cut(s)	1726
SspI	AATATT	1 cut(s)	1757
SspMI	CTAG	9 cut(s)	177, 504, 549, 761, 944, 1026, 1125, 1784, 2263
StyD4I	CCNGG	6 cut(s)	322, 368, 829, 1900, 1918, 2246
StyI	CCWWGG	4 cut(s)	183, 303, 1015, 2202
TaaI	ACNGT	2 cut(s)	679, 1692
TaiI	ACGT	1 cut(s)	2144
TaqI	TCGA	5 cut(s)	63, 224, 1227, 1407, 1770
TauI	GCSGC	4 cut(s)	8, 73, 147, 1822
TfiI	GAWTC	5 cut(s)	168, 236, 365, 1145, 2086
Tru1I	TTAA	9 cut(s)	651, 954, 1352, 1413, 1482, 1530, 1827, 1866, 1941
Tru9I	TTAA	9 cut(s)	651, 954, 1352, 1413, 1482, 1530, 1827, 1866, 1941
TscAI	CASTG	5 cut(s)	201, 253, 522, 549, 909
TseFI	GTSAC	2 cut(s)	1649, 1779
TseI	GCWGC	8 cut(s)	243, 521, 524, 757, 812, 1169, 1507, 2078
Tsp45I	GTSAC	2 cut(s)	1649, 1779
TspGWI	ACGGA	1 cut(s)	2230
TspRI	CASTG	5 cut(s)	201, 253, 522, 549, 909
Van91I	CCANNNNNTGG	1 cut(s)	1552
Vha464I	CTTAAG	1 cut(s)	953
VpaK11BI	GGWCC	1 cut(s)	180
XagI	CCTNNNNNAGG	1 cut(s)	894
XapI	RAATTY	5 cut(s)	846, 864, 1841, 1860, 2064
XceI	RCATGY	2 cut(s)	1198, 2159
XmiI	GTMKAC	1 cut(s)	1694
XmnI	GAANNNNTTC	3 cut(s)	823, 1344, 2129
XspI	CTAG	9 cut(s)	177, 504, 549, 761, 944, 1026, 1125, 1784, 2263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.