Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006475

Physical Location & Seq

Genomic Coordinates Forward (+)

6369672 .. 6370424

Gene Structure 753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g09530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCTGCTGGAAGACATGGGGGTTATCGTGAAAATGAATTCAGGGAACGAGAGTCCAGTTTTGAGTTGCCAAGGAAGGATTTTGCTACGGCCAAGGAGGACTATGAACGGATTAGGAACGGAAATCCTGATGTTGAAAGGGGTCAAGTTAGGGATTTGAGAGATAAAATTAGGGTTAGGCAGAAGGATTCAAAGGAGGGGAATGGTGCTAATGGTGGGTATCGCGCCTCTTCGAGTAGGAGTGATTCAAGCAATAGCAGTGGGCGGGTTGTGAGCCGTGGGCCCAAGCCTTGTGGATTTTCTCTTAGGGCATTGGACAGGGAACCTGGTGAATTGTCGAGTGAGAGTGGGTCTGACGATGCTATTGAATCTGCAGCGCAGATCAAAGAAAATACAGTTCCAAAAGTGGTGGAGAATGGAGCTCAGTCTCCGAAAGAGAGGAAAAGGAAGTTTTCGCCAATTGTCTGGGATAGAGATGACCAAGGAGTGAGTAATCCATCAAAAAATAGGATTACCACAGTGGCAGCAGCACTTCCTCCACAACCTCCATTGTCTAGGGTACATCATCAGTCTCCGAATGTTATTTCAGATAACAGCGTACAAATATCTTCAGCTAAAATTGATCAAGTCGAGAATTTACAATCTTCCTCACCAGTTAAGGCACCGGTGGGATCTGGGTCTGTTAGCAATGGTGTTTCTGAGTCTCCATTGGGGATATCTTCACCAAATCAGAAATCGGATGATCGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

251

Amino Acids

27.1

Weight (kDa)

9.18

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67580 AT1G67580
fragaria_vesca	FvH4_4g24200
malus_domestica	MD13G1113400.v1.1 MD16G1112700.v1.1
prunus_persica	Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1 Prupe.1G232700_v2.0.a1
pyrus_communis	pycom13g09880 pycom16g09530
rosa_chinensis	RchiOBHm_Chr4g0431041
rosa_laevigata	RLG00000006930
rosa_multiflora	Rmu_co8378327.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372660
rosa_rugosa	Rorug04G0247500 Rorug04G0247600 Rorug04G0247700.1 Rorug04G0247800
rosa_samantha	Rh4AG304400 Rh4BG311600 Rh4CG327900 Rh4DG308100
rosa_wichuraiana	Rw4G026430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	661
AccII	CGCG	1 cut(s)	225
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	2 cut(s)	38, 634
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	2 cut(s)	561, 600
AgeI	ACCGGT	1 cut(s)	664
AgsI	TTSAA	4 cut(s)	137, 192, 249, 368
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	2 cut(s)	422, 614
AluI	AGCT	2 cut(s)	422, 614
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	3 cut(s)	432, 576, 708
AlwI	GGATC	1 cut(s)	679
AoxI	GGCC	2 cut(s)	90, 281
ApaI	GGGCCC	1 cut(s)	285
ApeKI	GCWGC	4 cut(s)	5, 374, 524, 527
ApoI	RAATTY	2 cut(s)	38, 634
AsiGI	ACCGGT	1 cut(s)	664
AspLEI	GCGC	2 cut(s)	227, 379
AspS9I	GGNCC	2 cut(s)	281, 282
AsuHPI	GGTGA	3 cut(s)	341, 642, 714
BaeGI	GKGCMC	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	661
BanII	GRGCYC	2 cut(s)	285, 424
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	3 cut(s)	386, 536, 539
BccI	CCATC	1 cut(s)	505
BceAI	ACGGC	2 cut(s)	105, 261
BciT130I	CCWGG	1 cut(s)	327
BclI	TGATCA	1 cut(s)	622
BcoDI	GTCTC	3 cut(s)	432, 576, 708
BfaI	CTAG	1 cut(s)	555
BfmI	CTRYAG	1 cut(s)	372
BisI	GCNGC	4 cut(s)	6, 375, 525, 528
BlsI	GCNGC	4 cut(s)	7, 376, 526, 529
Bme1390I	CCNGG	1 cut(s)	327
BmgT120I	GGNCC	2 cut(s)	281, 282
BmiI	GGNNCC	3 cut(s)	283, 324, 663
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	19
Bsa29I	ATCGAT	1 cut(s)	745
BsaJI	CCNNGG	4 cut(s)	71, 93, 277, 481
BsaWI	WCCGGW	1 cut(s)	664
Bse118I	RCCGGY	1 cut(s)	664
Bse1I	ACTGG	2 cut(s)	57, 653
Bse3DI	GCAATG	1 cut(s)	694
BseBI	CCWGG	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	745
BseDI	CCNNGG	4 cut(s)	71, 93, 277, 481
BseGI	GGATG	1 cut(s)	745
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	2 cut(s)	437, 690
BseNI	ACTGG	2 cut(s)	57, 653
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	3 cut(s)	386, 536, 539
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	92, 283
BshNI	GGYRCC	1 cut(s)	661
BshTI	ACCGGT	1 cut(s)	664
BshVI	ATCGAT	1 cut(s)	745
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	665
BsmAI	GTCTC	3 cut(s)	432, 576, 708
BsnI	GGCC	2 cut(s)	92, 283
Bsp120I	GGGCCC	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	285, 424
Bsp143I	GATC	5 cut(s)	381, 622, 671, 742, 746
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	2 cut(s)	92, 283
BspCNI	CTCAG	2 cut(s)	436, 691
BspDI	ATCGAT	1 cut(s)	745
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	749
BspLI	GGNNCC	3 cut(s)	283, 324, 663
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	1 cut(s)	679
BspT107I	GGYRCC	1 cut(s)	661
BsrDI	GCAATG	1 cut(s)	694
BsrFI	RCCGGY	1 cut(s)	664
BsrI	ACTGG	2 cut(s)	57, 653
BssAI	RCCGGY	1 cut(s)	664
BssECI	CCNNGG	4 cut(s)	71, 93, 277, 481
BssMI	GATC	5 cut(s)	381, 622, 671, 742, 746
BssT1I	CCWWGG	3 cut(s)	71, 93, 481
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	397, 520
Bst6I	CTCTTC	1 cut(s)	235
BstDEI	CTNAG	3 cut(s)	305, 423, 699
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	745
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	227, 379
BstKTI	GATC	5 cut(s)	384, 625, 674, 745, 749
BstMAI	GTCTC	3 cut(s)	432, 576, 708
BstMBI	GATC	5 cut(s)	381, 622, 671, 742, 746
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	285
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	386, 536, 539
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	671
BstXI	CCANNNNNNTGG	1 cut(s)	465
BstYI	RGATCY	1 cut(s)	671
Bsu15I	ATCGAT	1 cut(s)	745
BsuRI	GGCC	2 cut(s)	92, 283
BsuTUI	ATCGAT	1 cut(s)	745
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	745
BtsI	GCAGTG	1 cut(s)	265
BtsIMutI	CAGTG	2 cut(s)	265, 525
CciI	TCATGA	1 cut(s)	749
CfoI	GCGC	2 cut(s)	227, 379
Cfr10I	RCCGGY	1 cut(s)	664
Cfr13I	GGNCC	2 cut(s)	281, 282
ClaI	ATCGAT	1 cut(s)	745
CsiI	ACCWGGT	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	560, 599
CspAI	ACCGGT	1 cut(s)	664
CspCI	CAANNNNNGTGG	6 cut(s)	241, 274, 276, 309, 390, 425
CviAII	CATG	2 cut(s)	17, 750
CviJI	RGCY	7 cut(s)	5, 92, 276, 283, 289, 422, 614
CviKI_1	RGCY	7 cut(s)	5, 92, 276, 283, 289, 422, 614
CviQI	GTAC	2 cut(s)	560, 599
DdeI	CTNAG	3 cut(s)	305, 423, 699
DpnI	GATC	5 cut(s)	383, 624, 673, 744, 748
DpnII	GATC	5 cut(s)	381, 622, 671, 742, 746
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Ecl136II	GAGCTC	1 cut(s)	422
Eco130I	CCWWGG	3 cut(s)	71, 93, 481
Eco24I	GRGCYC	2 cut(s)	285, 424
Eco32I	GATATC	1 cut(s)	717
Eco53kI	GAGCTC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	594
EcoICRI	GAGCTC	1 cut(s)	422
EcoRI	GAATTC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	717
EcoT14I	CCWWGG	3 cut(s)	71, 93, 481
EcoT38I	GRGCYC	2 cut(s)	285, 424
ErhI	CCWWGG	3 cut(s)	71, 93, 481
FaeI	CATG	2 cut(s)	20, 753
FaiI	YATR	3 cut(s)	18, 105, 751
FatI	CATG	2 cut(s)	16, 749
FauI	CCCGC	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	4 cut(s)	6, 375, 525, 528
FriOI	GRGCYC	2 cut(s)	285, 424
Fsp4HI	GCNGC	4 cut(s)	6, 375, 525, 528
FspBI	CTAG	1 cut(s)	555
GlaI	GCGC	2 cut(s)	226, 378
GluI	GCNGC	4 cut(s)	6, 375, 525, 528
HaeIII	GGCC	2 cut(s)	92, 283
HapII	CCGG	1 cut(s)	665
HhaI	GCGC	2 cut(s)	227, 379
Hin1II	CATG	2 cut(s)	20, 753
Hin6I	GCGC	2 cut(s)	225, 377
HinP1I	GCGC	2 cut(s)	225, 377
HinfI	GANTC	5 cut(s)	53, 188, 245, 368, 701
HpaII	CCGG	1 cut(s)	665
HphI	GGTGA	3 cut(s)	341, 642, 714
Hpy188I	TCNGA	7 cut(s)	355, 432, 576, 589, 700, 732, 739
Hpy188III	TCNNGA	4 cut(s)	29, 128, 631, 750
HpyAV	CCTTC	2 cut(s)	70, 178
HpyCH4III	ACNGT	2 cut(s)	397, 520
HpyCH4V	TGCA	1 cut(s)	374
HpyF3I	CTNAG	3 cut(s)	305, 423, 699
Hsp92II	CATG	2 cut(s)	20, 753
HspAI	GCGC	2 cut(s)	225, 377
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	5 cut(s)	381, 622, 671, 742, 746
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	3 cut(s)	386, 536, 539
LweI	GCATC	1 cut(s)	349
MabI	ACCWGGT	1 cut(s)	325
MaeI	CTAG	1 cut(s)	555
MalI	GATC	5 cut(s)	383, 624, 673, 744, 748
MboI	GATC	5 cut(s)	381, 622, 671, 742, 746
MboII	GAAGA	5 cut(s)	24, 222, 600, 636, 711
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	2 cut(s)	285, 424
MluCI	AATT	6 cut(s)	38, 168, 332, 459, 618, 634
MlyI	GAGTC	2 cut(s)	62, 710
MnlI	CCTC	7 cut(s)	91, 190, 238, 432, 546, 555, 658
MseI	TTAA	1 cut(s)	657
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	225
NdeII	GATC	5 cut(s)	381, 622, 671, 742, 746
NlaIII	CATG	2 cut(s)	20, 753
NlaIV	GGNNCC	3 cut(s)	283, 324, 663
PagI	TCATGA	1 cut(s)	749
PfeI	GAWTC	3 cut(s)	188, 245, 368
PinAI	ACCGGT	1 cut(s)	664
PkrI	GCNGC	4 cut(s)	7, 376, 526, 529
PleI	GAGTC	2 cut(s)	61, 709
PpsI	GAGTC	2 cut(s)	61, 709
Psp124BI	GAGCTC	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	3 cut(s)	283, 324, 663
PspOMI	GGGCCC	1 cut(s)	281
PspPI	GGNCC	2 cut(s)	281, 282
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	671
RsaI	GTAC	2 cut(s)	561, 600
RsaNI	GTAC	2 cut(s)	560, 599
SacI	GAGCTC	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	4 cut(s)	6, 375, 525, 528
Sau3AI	GATC	5 cut(s)	381, 622, 671, 742, 746
Sau96I	GGNCC	2 cut(s)	281, 282
SchI	GAGTC	2 cut(s)	62, 710
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	2 cut(s)	285, 424
SetI	ASST	4 cut(s)	328, 424, 547, 616
SexAI	ACCWGGT	1 cut(s)	325
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	372
SgrAI	CRCCGGYG	1 cut(s)	664
Sse9I	AATT	6 cut(s)	38, 168, 332, 459, 618, 634
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	1 cut(s)	555
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	3 cut(s)	71, 93, 481
TaaI	ACNGT	2 cut(s)	397, 520
TaqI	TCGA	4 cut(s)	233, 338, 630, 745
TasI	AATT	6 cut(s)	38, 168, 332, 459, 618, 634
TfiI	GAWTC	3 cut(s)	188, 245, 368
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	2 cut(s)	265, 525
TseI	GCWGC	4 cut(s)	5, 374, 524, 527
TspDTI	ATGAA	2 cut(s)	51, 120
TspGWI	ACGGA	2 cut(s)	124, 135
TspRI	CASTG	2 cut(s)	265, 525
XapI	RAATTY	2 cut(s)	38, 634
XspI	CTAG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.