Prupe.1G284700_v2.0.a1

COBW domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011931
Physical Location & Seq
Forward (+)
28607414 .. 28610980
3567 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G284700.1

Sequence Viewer

Length: 1125 bp
ATGGAAGACGACGAAGAAGCTCCACCTCTCGCTGTTGAAATTGACCAACCCACGGAACCCTACCCTCAGCAGCAATCCAATTCGAGCGGCCACAAAGACGGTGACGCGCCCGTCGGCGTCACCGTCATCACTGGCTATCTCGGTGCGGGCAAATCCACTCTGGTTAATCATATAATAAATTCTCAACACGGGAAGAGAATTGCTGTCATATTAAACGAGTTCGGTGAGGAAATTGGTGTAGAAAGAGCTATGATAAACGAAGGAGATGGGGGTGCGCTTGTTGAAGAGTGGGTTGAGTTAGCAAATGGGTGTATATGTTGCACTGTCAAGCACAGTTTAGTGCAAGCACTAGAGCAACTTGTTCAAAGAAAAGAAAGACTTGATCATATATTGCTGGAGACTACTGGGTTAGCCAACCCGGCTCCGCTTGCTTCGGTTCTGTGGTTGGATGATCAGCTAGAATCGTCTGTCAAGCTTGATTCAATTATCACTGTTGTGGATGCCAAGAACCTCCGTTTTCAGCTCAGCGAGAATCAAAGTTCGTCTTCATTTCCTGAAGCATATGTTCAGATTGCATTTGCGGATGTTATAATTCTTAACAAGGTTGATTTGGTTTCTCCAGAGGGTTCTGCGGATTTTCTGGAGGAACTGGAGAAGGAGATACATAGTATTAACTCACTTGCTAGTATCATTCGTTCTGTTCGTGGTCAAGTTGACTTGTCCAATATATTGGACTGTCGGGCCTATGATGCTATGCATGCTACTCATTTAGAATCATTATTGGTAGAAACTCGTGCTTTGTCTACACGAGATCTCCATGACAGTGGTGTACGAACCTTATGCATTTGTGAGCCACGGCAGGTTGATCTTGAAAAGGTTCGTTTATGGCTTGAGGAGATTCTTTGGGAGAAGAAACATGGCATGGATGTTTACCGCTGCAAAGGGGTTTTGAGCTTTCACAATTCAAATCAATTACATACTTTGCAGGCAGTGAAGGAGATATATGAGATTGTGCCAACTCGTGATTGGAAAAAGCAAGAAAATCAGACGAACAAGATAGTGTTTATAGGTCATAATCTAAACGAGAATGTTCTTACTGAGTCTTTTCAAGCTTGTGTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CobW_C KTI12 cobW

Protein Analysis

375

Amino Acids

41.71

Weight (kDa)

4.83

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26520
fragaria_vesca FvH4_4g30300
malus_domestica MD13G1064000.v1.1 MD16G1062700.v1.1
prunus_persica Prupe.1G284700_v2.0.a1
pyrus_communis pycom16g05480
rosa_chinensis RchiOBHm_Chr4g0438581
rosa_laevigata RLG00000006349
rosa_multiflora Rmu_co8071018.1_g000001 Rmu_sc0002327.1_g000002 Rmu_sc0020430.1_g000001
rosa_roxburghii Rroxscaffold_5G00379590
rosa_rugosa Rorug04G0311700
rosa_samantha Rh4AG362100 Rh4BG373500 Rh4CG387400 Rh4DG368200
rosa_wichuraiana Rw0G006680 Rw0G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 590
AasI GACNNNNNNGTC 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 850
AccBSI CCGCTC 1 cut(s) 87
AccI GTMKAC 1 cut(s) 803
AccII CGCG 1 cut(s) 107
AciI CCGC 6 cut(s) 87, 146, 425, 581, 632, 934
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 576
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 831
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 7 cut(s) 38, 284, 365, 483, 872, 966, 1109
AleI CACNNNNGTG 1 cut(s) 494
AluBI AGCT 7 cut(s) 20, 248, 457, 475, 523, 954, 1112
AluI AGCT 7 cut(s) 20, 248, 457, 475, 523, 954, 1112
Alw26I GTCTC 1 cut(s) 392
AoxI GGCC 2 cut(s) 88, 741
ApeKI GCWGC 2 cut(s) 70, 936
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 876
AspLEI GCGC 2 cut(s) 109, 277
AspS9I GGNCC 1 cut(s) 741
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 3 cut(s) 112, 113, 236
BauI CACGAG 3 cut(s) 792, 807, 1020
BbsI GAAGAC 2 cut(s) 12, 537
BbvCI CCTCAGC 1 cut(s) 66
BbvI GCAGC 2 cut(s) 82, 923
BccI CCATC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 872
BcgI CGANNNNNNTGC 2 cut(s) 822, 856
BclI TGATCA 2 cut(s) 382, 451
BcnI CCSGG 1 cut(s) 419
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 3 cut(s) 350, 458, 684
BfuAI ACCTGC 1 cut(s) 850
BglI GCCNNNNNGGC 1 cut(s) 419
BglII AGATCT 1 cut(s) 811
BisI GCNGC 3 cut(s) 71, 88, 937
BlpI GCTNAGC 1 cut(s) 524
BlsI GCNGC 3 cut(s) 72, 89, 938
Bme1390I CCNGG 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 741
BmiI GGNNCC 2 cut(s) 57, 423
BmrFI CCNGG 1 cut(s) 419
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 2 cut(s) 490, 739
BmuI ACTGGG 1 cut(s) 414
BpiI GAAGAC 2 cut(s) 12, 537
BpmI CTGGAG 4 cut(s) 416, 603, 662, 671
Bpu10I CCTNAGC 1 cut(s) 66
Bpu1102I GCTNAGC 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 911
BpuMI CCSGG 1 cut(s) 419
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 51, 854
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 3 cut(s) 136, 409, 654
BseDI CCNNGG 2 cut(s) 51, 854
BseGI GGATG 4 cut(s) 454, 505, 589, 931
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 3 cut(s) 80, 538, 1089
BseNI ACTGG 3 cut(s) 136, 409, 654
BseRI GAGGAG 1 cut(s) 908
BseXI GCAGC 2 cut(s) 82, 923
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 2 cut(s) 90, 743
BsiSI CCGG 1 cut(s) 419
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 392
BsnI GGCC 2 cut(s) 90, 743
Bsp143I GATC 4 cut(s) 382, 451, 811, 865
Bsp1720I GCTNAGC 1 cut(s) 524
BspACI CCGC 6 cut(s) 87, 146, 425, 581, 632, 934
BspANI GGCC 2 cut(s) 90, 743
BspCNI CTCAG 3 cut(s) 79, 537, 1090
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 2 cut(s) 57, 423
BspMI ACCTGC 1 cut(s) 850
BsrBI CCGCTC 1 cut(s) 87
BsrI ACTGG 3 cut(s) 136, 409, 654
BssECI CCNNGG 2 cut(s) 51, 854
BssMI GATC 4 cut(s) 382, 451, 811, 865
BssNI GRCGYC 1 cut(s) 117
BssSI CACGAG 3 cut(s) 792, 807, 1020
Bst2BI CACGAG 3 cut(s) 792, 807, 1020
Bst4CI ACNGT 7 cut(s) 101, 124, 325, 335, 493, 737, 824
Bst6I CTCTTC 2 cut(s) 188, 279
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 5 cut(s) 148, 345, 429, 759, 987
BstDEI CTNAG 3 cut(s) 66, 524, 1098
BstDSI CCRYGG 2 cut(s) 51, 854
BstF5I GGATG 4 cut(s) 454, 505, 589, 931
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 2 cut(s) 109, 277
BstKTI GATC 4 cut(s) 385, 454, 814, 868
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 4 cut(s) 382, 451, 811, 865
BstMWI GCNNNNNNNGC 4 cut(s) 419, 428, 749, 758
BstNSI RCATGY 1 cut(s) 761
BstSCI CCNGG 1 cut(s) 417
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 82, 923
BstV2I GAAGAC 2 cut(s) 12, 537
BstX2I RGATCY 1 cut(s) 811
BstXI CCANNNNNNTGG 2 cut(s) 730, 824
BstYI RGATCY 1 cut(s) 811
BsuRI GGCC 2 cut(s) 90, 743
BtgI CCRYGG 2 cut(s) 51, 854
BtsCI GGATG 4 cut(s) 454, 505, 589, 931
BtsI GCAGTG 1 cut(s) 996
BtsIMutI CAGTG 5 cut(s) 129, 321, 489, 829, 996
BveI ACCTGC 1 cut(s) 850
Cac8I GCNNGC 5 cut(s) 148, 345, 429, 759, 987
CfoI GCGC 2 cut(s) 109, 277
Cfr13I GGNCC 1 cut(s) 741
CseI GACGC 2 cut(s) 106, 113
Csp6I GTAC 1 cut(s) 830
CviAII CATG 4 cut(s) 758, 818, 917, 922
CviQI GTAC 1 cut(s) 830
DdeI CTNAG 3 cut(s) 66, 524, 1098
DpnI GATC 4 cut(s) 384, 453, 813, 867
DpnII GATC 4 cut(s) 382, 451, 811, 865
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 188, 279
EarI CTCTTC 2 cut(s) 188, 279
Eco57I CTGAAG 1 cut(s) 576
EcoT22I ATGCAT 2 cut(s) 759, 845
FaeI CATG 4 cut(s) 761, 821, 920, 925
FalI AAGNNNNNCTT 4 cut(s) 363, 395, 529, 561
FatI CATG 4 cut(s) 757, 817, 916, 921
FauI CCCGC 1 cut(s) 139
FauNDI CATATG 1 cut(s) 562
FbaI TGATCA 2 cut(s) 382, 451
FblI GTMKAC 1 cut(s) 803
Fnu4HI GCNGC 3 cut(s) 71, 88, 937
FokI GGATG 4 cut(s) 461, 512, 596, 938
Fsp4HI GCNGC 3 cut(s) 71, 88, 937
FspBI CTAG 3 cut(s) 350, 458, 684
GlaI GCGC 2 cut(s) 108, 276
GluI GCNGC 3 cut(s) 71, 88, 937
GsuI CTGGAG 4 cut(s) 416, 603, 662, 671
HaeIII GGCC 2 cut(s) 90, 743
HapII CCGG 1 cut(s) 419
HgaI GACGC 2 cut(s) 106, 113
HhaI GCGC 2 cut(s) 109, 277
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 4 cut(s) 761, 821, 920, 925
Hin6I GCGC 2 cut(s) 107, 275
HinP1I GCGC 2 cut(s) 107, 275
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HindIII AAGCTT 2 cut(s) 473, 1110
HinfI GANTC 6 cut(s) 461, 479, 532, 773, 898, 1100
HpaII CCGG 1 cut(s) 419
HphI GGTGA 3 cut(s) 112, 113, 236
Hpy166II GTNNAC 4 cut(s) 715, 804, 830, 931
Hpy188I TCNGA 2 cut(s) 570, 1047
Hpy188III TCNNGA 5 cut(s) 554, 620, 641, 869, 1022
Hpy8I GTNNAC 4 cut(s) 715, 804, 830, 931
Hpy99I CGWCG 2 cut(s) 14, 116
HpyAV CCTTC 3 cut(s) 254, 649, 988
HpyCH4III ACNGT 7 cut(s) 101, 124, 325, 335, 493, 737, 824
HpyCH4V TGCA 7 cut(s) 321, 343, 575, 757, 843, 939, 985
HpyF10VI GCNNNNNNNGC 4 cut(s) 419, 428, 749, 758
HpyF3I CTNAG 3 cut(s) 66, 524, 1098
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 4 cut(s) 761, 821, 920, 925
HspAI GCGC 2 cut(s) 107, 275
Ksp22I TGATCA 2 cut(s) 382, 451
Kzo9I GATC 4 cut(s) 382, 451, 811, 865
LmnI GCTCC 2 cut(s) 25, 427
Lsp1109I GCAGC 2 cut(s) 82, 923
LweI GCATC 2 cut(s) 490, 739
MaeI CTAG 3 cut(s) 350, 458, 684
MaeIII GTNAC 2 cut(s) 101, 118
MalI GATC 4 cut(s) 384, 453, 813, 867
MbiI CCGCTC 1 cut(s) 87
MboI GATC 4 cut(s) 382, 451, 811, 865
MboII GAAGA 6 cut(s) 17, 26, 205, 296, 537, 922
MflI RGATCY 1 cut(s) 811
MluCI AATT 9 cut(s) 39, 79, 178, 198, 231, 483, 591, 961, 971
MlyI GAGTC 1 cut(s) 1109
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 7 cut(s) 36, 75, 220, 521, 616, 637, 886
Mph1103I ATGCAT 2 cut(s) 759, 845
MroXI GAANNNNTTC 1 cut(s) 876
MseI TTAA 4 cut(s) 165, 212, 597, 672
MslI CAYNNNNRTG 2 cut(s) 494, 822
MspA1I CMGCKG 1 cut(s) 936
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 1 cut(s) 419
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 4 cut(s) 419, 428, 749, 758
NciI CCSGG 1 cut(s) 419
NdeI CATATG 1 cut(s) 562
NdeII GATC 4 cut(s) 382, 451, 811, 865
NlaIII CATG 4 cut(s) 761, 821, 920, 925
NlaIV GGNNCC 2 cut(s) 57, 423
NmuCI GTSAC 2 cut(s) 101, 118
NsiI ATGCAT 2 cut(s) 759, 845
NspI RCATGY 1 cut(s) 761
OliI CACNNNNGTG 1 cut(s) 494
PaeI GCATGC 1 cut(s) 761
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 700
PdmI GAANNNNTTC 1 cut(s) 876
PfeI GAWTC 5 cut(s) 461, 479, 532, 773, 898
PkrI GCNGC 3 cut(s) 72, 89, 938
PleI GAGTC 1 cut(s) 1108
PpsI GAGTC 1 cut(s) 1108
PsiI TTATAA 1 cut(s) 590
PspN4I GGNNCC 2 cut(s) 57, 423
PspPI GGNCC 1 cut(s) 741
PsrI GAACNNNNNNTAC 2 cut(s) 679, 711
PsuI RGATCY 1 cut(s) 811
RsaI GTAC 1 cut(s) 831
RsaNI GTAC 1 cut(s) 830
RseI CAYNNNNRTG 2 cut(s) 494, 822
SaqAI TTAA 4 cut(s) 165, 212, 597, 672
SatI GCNGC 3 cut(s) 71, 88, 937
Sau3AI GATC 4 cut(s) 382, 451, 811, 865
Sau96I GGNCC 1 cut(s) 741
SchI GAGTC 1 cut(s) 1109
ScrFI CCNGG 1 cut(s) 419
SfaNI GCATC 2 cut(s) 490, 739
SmiMI CAYNNNNRTG 2 cut(s) 494, 822
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
SphI GCATGC 1 cut(s) 761
Sse9I AATT 9 cut(s) 39, 79, 178, 198, 231, 483, 591, 961, 971
SsiI CCGC 6 cut(s) 87, 146, 425, 581, 632, 934
SspMI CTAG 3 cut(s) 350, 458, 684
StyD4I CCNGG 1 cut(s) 417
TaaI ACNGT 7 cut(s) 101, 124, 325, 335, 493, 737, 824
TaqI TCGA 1 cut(s) 83
TasI AATT 9 cut(s) 39, 79, 178, 198, 231, 483, 591, 961, 971
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 5 cut(s) 461, 479, 532, 773, 898
Tru1I TTAA 4 cut(s) 165, 212, 597, 672
Tru9I TTAA 4 cut(s) 165, 212, 597, 672
TscAI CASTG 5 cut(s) 136, 328, 496, 829, 996
TseFI GTSAC 2 cut(s) 101, 118
TseI GCWGC 2 cut(s) 70, 936
Tsp45I GTSAC 2 cut(s) 101, 118
TspDTI ATGAA 1 cut(s) 537
TspGWI ACGGA 2 cut(s) 68, 503
TspRI CASTG 5 cut(s) 136, 328, 496, 829, 996
XapI RAATTY 1 cut(s) 178
XceI RCATGY 1 cut(s) 761
XcmI CCANNNNNNNNNTGG 1 cut(s) 1023
XmiI GTMKAC 1 cut(s) 803
XmnI GAANNNNTTC 1 cut(s) 876
XspI CTAG 3 cut(s) 350, 458, 684
Zsp2I ATGCAT 2 cut(s) 759, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.