Rmu_sc0020430.1_g000001

COBW domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020430.1
OG0011931
Physical Location & Seq
Reverse (-)
1 .. 1835
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020430.1_g000001.1.cds

Sequence Viewer

Length: 849 bp
atggaggacgaagaagaaactccacctctcgccgttgaaatcgaccaacccttttcaagtggacccgatgacgtcgacgctcccgtcggcgtcaccgtcgtcactggttatctgggttcaggcaaatccactctggttaatcatatattaaacacccaacatgggaagaaaattgctgtgatattaaacgagtttggtgaggaaattggggttgagagggcaatgataaacgaaggagatggtggtgctcttgtggaagagtgggttgagttggcaaatgggtgtatatgttgcactgtgaagcacagtttggtgcaagcactagagcaacttgtgcagagaaaagaaagacttgatcatatattgttggagactactgggttggctaaccctgctccacttgcttcggttctgtggttggatgatcagttggaatcgactgtcaagctcgattcgattatcactgttgtggatgccaagaacctcctttttcagctgagcgagaataaaagttcatcctcatttcctgaagcatatctgcagattgcatttgcggatgttgtaatacttaacaaggttgatttggtttctccagagggttctaaagattatctggaggaactcgagaaggagatacatagtattaattcgcttgcttgtatcatccgttctgttcgttgtcaagttgacttgtctaagatattggactgtcgggcctatgatgctacgcatgctgttcatttagaatcattattggaagaaagtcgtactttatctacacgggatctccatgatagtggtgtgcgaaccttatgcattagtgagcaacagaaggttgatcttgaaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CobW_C KTI12 cobW

Protein Analysis

283

Amino Acids

31.07

Weight (kDa)

4.53

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011931)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26520
fragaria_vesca FvH4_4g30300
malus_domestica MD13G1064000.v1.1 MD16G1062700.v1.1
prunus_persica Prupe.1G284700_v2.0.a1
pyrus_communis pycom16g05480
rosa_chinensis RchiOBHm_Chr4g0438581
rosa_laevigata RLG00000006349
rosa_multiflora Rmu_co8071018.1_g000001 Rmu_sc0002327.1_g000002 Rmu_sc0020430.1_g000001
rosa_roxburghii Rroxscaffold_5G00379590
rosa_rugosa Rorug04G0311700
rosa_samantha Rh4AG362100 Rh4BG373500 Rh4CG387400 Rh4DG368200
rosa_wichuraiana Rw0G006680 Rw0G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AatII GACGTC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 75
AciI CCGC 1 cut(s) 554
AclWI GGATC 1 cut(s) 792
AcuI CTGAAG 1 cut(s) 549
AcyI GRCGYC 2 cut(s) 72, 90
AfaI GTAC 1 cut(s) 769
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 3 cut(s) 38, 57, 845
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AleI CACNNNNGTG 1 cut(s) 467
AluBI AGCT 2 cut(s) 448, 496
AluI AGCT 2 cut(s) 448, 496
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 1 cut(s) 792
Ama87I CYCGRG 1 cut(s) 623
AoxI GGCC 1 cut(s) 714
AseI ATTAAT 1 cut(s) 645
AspS9I GGNCC 2 cut(s) 62, 714
AsuHPI GGTGA 2 cut(s) 85, 209
AvaI CYCGRG 1 cut(s) 623
AvaII GGWCC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 250
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 17
BcgI CGANNNNNNTGC 2 cut(s) 795, 829
BclI TGATCA 2 cut(s) 355, 424
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 539
BlpI GCTNAGC 1 cut(s) 497
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 623
BmgT120I GGNCC 2 cut(s) 62, 714
BmiI GGNNCC 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 2 cut(s) 463, 712
BmuI ACTGGG 1 cut(s) 387
BpmI CTGGAG 2 cut(s) 576, 635
Bpu1102I GCTNAGC 1 cut(s) 497
BsaHI GRCGYC 2 cut(s) 72, 90
BsaXI ACNNNNNCTCC 2 cut(s) 771, 801
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 2 cut(s) 109, 382
Bse3DI GCAATG 1 cut(s) 228
BseGI GGATG 5 cut(s) 427, 478, 515, 562, 663
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 488
BseNI ACTGG 2 cut(s) 109, 382
BsgI GTGCAG 1 cut(s) 356
BshFI GGCC 1 cut(s) 716
BsiHKAI GWGCWC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 623
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 365
BsnI GGCC 1 cut(s) 716
BsoBI CYCGRG 1 cut(s) 623
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 4 cut(s) 355, 424, 784, 838
Bsp1720I GCTNAGC 1 cut(s) 497
BspACI CCGC 1 cut(s) 554
BspANI GGCC 1 cut(s) 716
BspCNI CTCAG 1 cut(s) 489
BspLI GGNNCC 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 543
BspPI GGATC 1 cut(s) 792
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 2 cut(s) 109, 382
BssMI GATC 4 cut(s) 355, 424, 784, 838
BssNI GRCGYC 2 cut(s) 72, 90
Bst4CI ACNGT 6 cut(s) 97, 298, 308, 442, 466, 710
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 2 cut(s) 72, 90
BstAPI GCANNNNNTGC 1 cut(s) 334
BstC8I GCNNGC 3 cut(s) 318, 654, 732
BstDEI CTNAG 2 cut(s) 497, 696
BstF5I GGATG 5 cut(s) 427, 478, 515, 562, 663
BstKTI GATC 4 cut(s) 358, 427, 787, 841
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 4 cut(s) 355, 424, 784, 838
BstMWI GCNNNNNNNGC 5 cut(s) 334, 392, 401, 722, 731
BstNSI RCATGY 1 cut(s) 734
BstSFI CTRYAG 1 cut(s) 539
BstX2I RGATCY 1 cut(s) 784
BstXI CCANNNNNNTGG 1 cut(s) 797
BstYI RGATCY 1 cut(s) 784
BsuRI GGCC 1 cut(s) 716
BtsCI GGATG 5 cut(s) 427, 478, 515, 562, 663
BtsIMutI CAGTG 3 cut(s) 102, 294, 462
Cac8I GCNNGC 3 cut(s) 318, 654, 732
Cfr13I GGNCC 2 cut(s) 62, 714
CseI GACGC 2 cut(s) 79, 86
Csp6I GTAC 1 cut(s) 768
CviAII CATG 3 cut(s) 161, 731, 791
CviJI RGCY 4 cut(s) 386, 448, 496, 716
CviKI_1 RGCY 4 cut(s) 386, 448, 496, 716
CviQI GTAC 1 cut(s) 768
DdeI CTNAG 2 cut(s) 497, 696
DpnI GATC 4 cut(s) 357, 426, 786, 840
DpnII GATC 4 cut(s) 355, 424, 784, 838
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 623
EcoT22I ATGCAT 1 cut(s) 818
FaeI CATG 3 cut(s) 164, 734, 794
FalI AAGNNNNNCTT 4 cut(s) 336, 368, 754, 786
FatI CATG 3 cut(s) 160, 730, 790
FbaI TGATCA 2 cut(s) 355, 424
FblI GTMKAC 1 cut(s) 75
FokI GGATG 5 cut(s) 434, 485, 502, 569, 650
FspBI CTAG 1 cut(s) 323
GsuI CTGGAG 2 cut(s) 576, 635
HaeIII GGCC 1 cut(s) 716
HgaI GACGC 2 cut(s) 79, 86
Hin1I GRCGYC 2 cut(s) 72, 90
Hin1II CATG 3 cut(s) 164, 734, 794
HincII GTYRAC 2 cut(s) 76, 688
HindII GTYRAC 2 cut(s) 76, 688
HinfI GANTC 3 cut(s) 434, 452, 746
HphI GGTGA 2 cut(s) 85, 209
Hpy166II GTNNAC 3 cut(s) 62, 76, 688
Hpy188III TCNNGA 5 cut(s) 527, 593, 614, 625, 842
Hpy8I GTNNAC 3 cut(s) 62, 76, 688
Hpy99I CGWCG 4 cut(s) 77, 80, 89, 101
HpyAV CCTTC 3 cut(s) 227, 622, 826
HpyCH4III ACNGT 6 cut(s) 97, 298, 308, 442, 466, 710
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 6 cut(s) 294, 316, 337, 541, 548, 816
HpyF10VI GCNNNNNNNGC 5 cut(s) 334, 392, 401, 722, 731
HpyF3I CTNAG 2 cut(s) 497, 696
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 2 cut(s) 72, 90
Hsp92II CATG 3 cut(s) 164, 734, 794
Ksp22I TGATCA 2 cut(s) 355, 424
Kzo9I GATC 4 cut(s) 355, 424, 784, 838
LmnI GCTCC 2 cut(s) 85, 400
LpnPI CCDG 9 cut(s) 90, 98, 105, 119, 363, 405, 540, 599, 606
LweI GCATC 2 cut(s) 463, 712
MaeI CTAG 1 cut(s) 323
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 91, 100
MalI GATC 4 cut(s) 357, 426, 786, 840
MboI GATC 4 cut(s) 355, 424, 784, 838
MboII GAAGA 5 cut(s) 23, 26, 178, 269, 770
MflI RGATCY 1 cut(s) 784
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 3 cut(s) 171, 204, 646
MmeI TCCRAC 3 cut(s) 348, 399, 411
MnlI CCTC 7 cut(s) 36, 193, 210, 494, 529, 589, 610
Mph1103I ATGCAT 1 cut(s) 818
MseI TTAA 5 cut(s) 138, 149, 185, 570, 645
MslI CAYNNNNRTG 2 cut(s) 467, 795
MspA1I CMGCKG 1 cut(s) 496
MwoI GCNNNNNNNGC 5 cut(s) 334, 392, 401, 722, 731
NdeII GATC 4 cut(s) 355, 424, 784, 838
NlaIII CATG 3 cut(s) 164, 734, 794
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 91, 100
NsiI ATGCAT 1 cut(s) 818
NspI RCATGY 1 cut(s) 734
OliI CACNNNNGTG 1 cut(s) 467
PaeI GCATGC 1 cut(s) 734
PaeR7I CTCGAG 1 cut(s) 623
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 93
PfeI GAWTC 3 cut(s) 434, 452, 746
PshBI ATTAAT 1 cut(s) 645
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 62, 714
PsrI GAACNNNNNNTAC 2 cut(s) 652, 684
PstI CTGCAG 1 cut(s) 543
PsuI RGATCY 1 cut(s) 784
PvuII CAGCTG 1 cut(s) 496
RsaI GTAC 1 cut(s) 769
RsaNI GTAC 1 cut(s) 768
RseI CAYNNNNRTG 2 cut(s) 467, 795
SalI GTCGAC 1 cut(s) 74
SaqAI TTAA 5 cut(s) 138, 149, 185, 570, 645
Sau3AI GATC 4 cut(s) 355, 424, 784, 838
Sau96I GGNCC 2 cut(s) 62, 714
SduI GDGCHC 1 cut(s) 250
SetI ASST 8 cut(s) 28, 75, 450, 486, 498, 579, 812, 837
SfaNI GCATC 2 cut(s) 463, 712
SfcI CTRYAG 1 cut(s) 539
Sfr274I CTCGAG 1 cut(s) 623
SgrDI CGTCGACG 1 cut(s) 74
SinI GGWCC 1 cut(s) 62
SlaI CTCGAG 1 cut(s) 623
SmiMI CAYNNNNRTG 2 cut(s) 467, 795
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
SphI GCATGC 1 cut(s) 734
Sse9I AATT 3 cut(s) 171, 204, 646
SsiI CCGC 1 cut(s) 554
SspMI CTAG 1 cut(s) 323
TaaI ACNGT 6 cut(s) 97, 298, 308, 442, 466, 710
TaiI ACGT 1 cut(s) 75
TaqI TCGA 6 cut(s) 42, 75, 437, 450, 455, 624
TasI AATT 3 cut(s) 171, 204, 646
TfiI GAWTC 3 cut(s) 434, 452, 746
Tru1I TTAA 5 cut(s) 138, 149, 185, 570, 645
Tru9I TTAA 5 cut(s) 138, 149, 185, 570, 645
TscAI CASTG 3 cut(s) 109, 301, 469
TseFI GTSAC 2 cut(s) 91, 100
Tsp45I GTSAC 2 cut(s) 91, 100
TspDTI ATGAA 2 cut(s) 504, 728
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 3 cut(s) 109, 301, 469
VpaK11BI GGWCC 1 cut(s) 62
VspI ATTAAT 1 cut(s) 645
XceI RCATGY 1 cut(s) 734
XhoI CTCGAG 1 cut(s) 623
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 1 cut(s) 323
ZraI GACGTC 1 cut(s) 73
Zsp2I ATGCAT 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.