Rorug04G0311700

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
48765986 .. 48767787
1802 bp
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UTR
Exon/CDS
Intron
Rorug04G0311700.1

Sequence Viewer

Length: 339 bp
ATGCTTCTCTCTATTTCAATTTGTAGATCTGAGAATGAACACGCACGAAGTGTTAAAGAGACGAGCCCATCACATGCAGTTGTAGTAGTAGTCATCGTAATCGACAGTGGTGGAGGAGTCAGAGTCATCAGGACGCAGAGCAAGGTCCAGAGGCAAAAAGCGAGGCGACCCAATTCCAGGTTTATACAGCTTTCAGGCTTAGATGGATGCTATTACGGGCGTCTCATGATCAGACAATCATGTATATGTAGTATAGAATCTACAAATGGAATTTTGATCCAGTTCAATATGAAAGTTTATGGAATGTTATCAAGTGATTCACTGTTTATGGGAATGTAA

Protein Analysis

112

Amino Acids

12.44

Weight (kDa)

9.76

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 271
AcsI RAATTY 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 220
AdeI CACNNNGTG 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 2 cut(s) 18, 286
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw26I GTCTC 2 cut(s) 53, 227
AlwI GGATC 1 cut(s) 271
ApoI RAATTY 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 145
AvaII GGWCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 68
BccI CCATC 2 cut(s) 76, 197
BciT130I CCWGG 1 cut(s) 178
BclI TGATCA 1 cut(s) 228
BcoDI GTCTC 2 cut(s) 53, 227
BglII AGATCT 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 197
BsaHI GRCGYC 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 178
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 2 cut(s) 53, 227
BsmBI CGTCTC 2 cut(s) 53, 227
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 3 cut(s) 26, 228, 276
BspCNI CTCAG 1 cut(s) 22
BspHI TCATGA 1 cut(s) 225
BspPI GGATC 1 cut(s) 271
BsrI ACTGG 1 cut(s) 280
BssMI GATC 3 cut(s) 26, 228, 276
BssNI GRCGYC 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 2 cut(s) 107, 324
BstACI GRCGYC 1 cut(s) 220
BstDEI CTNAG 2 cut(s) 30, 199
BstF5I GGATG 1 cut(s) 212
BstKTI GATC 3 cut(s) 29, 231, 279
BstMAI GTCTC 2 cut(s) 53, 227
BstMBI GATC 3 cut(s) 26, 228, 276
BstNI CCWGG 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BtsCI GGATG 1 cut(s) 212
BtsIMutI CAGTG 2 cut(s) 112, 320
CciI TCATGA 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 145
CseI GACGC 2 cut(s) 142, 209
CviAII CATG 3 cut(s) 74, 226, 240
CviJI RGCY 3 cut(s) 66, 190, 198
CviKI_1 RGCY 3 cut(s) 66, 190, 198
DdeI CTNAG 2 cut(s) 30, 199
DpnI GATC 3 cut(s) 28, 230, 278
DpnII GATC 3 cut(s) 26, 228, 276
DraIII CACNNNGTG 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 68
Esp3I CGTCTC 2 cut(s) 53, 227
FaeI CATG 3 cut(s) 77, 229, 243
FatI CATG 3 cut(s) 73, 225, 239
FbaI TGATCA 1 cut(s) 228
FokI GGATG 1 cut(s) 219
FriOI GRGCYC 1 cut(s) 68
HgaI GACGC 2 cut(s) 142, 209
Hin1I GRCGYC 1 cut(s) 220
Hin1II CATG 3 cut(s) 77, 229, 243
HinfI GANTC 4 cut(s) 117, 123, 257, 317
Hpy188I TCNGA 3 cut(s) 31, 122, 233
Hpy188III TCNNGA 3 cut(s) 130, 148, 226
HpyCH4III ACNGT 2 cut(s) 107, 324
HpyCH4V TGCA 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 30, 199
Hsp92I GRCGYC 1 cut(s) 220
Hsp92II CATG 3 cut(s) 77, 229, 243
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 3 cut(s) 26, 228, 276
LpnPI CCDG 6 cut(s) 115, 161, 163, 180, 190, 293
LweI GCATC 1 cut(s) 197
MalI GATC 3 cut(s) 28, 230, 278
MboI GATC 3 cut(s) 26, 228, 276
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 3 cut(s) 18, 172, 270
MlyI GAGTC 2 cut(s) 126, 132
MnlI CCTC 3 cut(s) 107, 144, 156
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 244
MspR9I CCNGG 1 cut(s) 178
MvaI CCWGG 1 cut(s) 178
NdeII GATC 3 cut(s) 26, 228, 276
NlaIII CATG 3 cut(s) 77, 229, 243
NspI RCATGY 1 cut(s) 77
PagI TCATGA 1 cut(s) 225
PfeI GAWTC 2 cut(s) 257, 317
PleI GAGTC 2 cut(s) 125, 131
PpsI GAGTC 2 cut(s) 125, 131
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspPI GGNCC 1 cut(s) 145
PsuI RGATCY 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 244
SaqAI TTAA 1 cut(s) 54
Sau3AI GATC 3 cut(s) 26, 228, 276
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 2 cut(s) 126, 132
ScrFI CCNGG 1 cut(s) 178
SduI GDGCHC 1 cut(s) 68
SetI ASST 3 cut(s) 147, 182, 192
SfaNI GCATC 1 cut(s) 197
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 244
Sse9I AATT 3 cut(s) 18, 172, 270
StyD4I CCNGG 1 cut(s) 176
TaaI ACNGT 2 cut(s) 107, 324
TaqI TCGA 1 cut(s) 102
TasI AATT 3 cut(s) 18, 172, 270
TfiI GAWTC 2 cut(s) 257, 317
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 2 cut(s) 112, 327
TspDTI ATGAA 2 cut(s) 51, 305
TspRI CASTG 2 cut(s) 112, 327
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 1 cut(s) 270
XceI RCATGY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.