MD13G1064300.v1.1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
4435549 .. 4440188
4640 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1064300.v1.1.491

Sequence Viewer

Length: 1545 bp
ATGGGGTCGGAAAGAGGAGGCCTAGCTTTGGTCGTCACAGCATTTCTATTGGCTGTTGGGTTTCCAAAATGTTTGTCGGATTCAGATATCAACAGGGGTAGCTTTCCCAAAGGTTTTGTCTTCGGAACTGCGTCTTCTGCTTTCCAGTACGAAGGTGCAGTTAAAGTGGACGGAAGGGGGCCTTCTATCTGGGACACCTTTTCACATACTTTTGGTAAAATAGCCGATTCCAGTAATGCAGATGTTGCTGTGGATGAGTATCACCATTATAAGGAGGATGTGCAACGTATGAAGGACATAGGAATGGATGCTTACAGATTTTCAATATCCTGGACTCGGATTTTTCCCAATGGAACCGGGCCTATTAATCAGGCGGGTGTTGATTACTACAATCGTCTCATCGATGCATTGCTAGCCAAAGGAATTGAACCATATGTGACCCTCTATCACTGGGACCTCCCTCAAGCATTGGAAGACAAATACAGCGGGTGGCTCAACCCTCAAGTCATAAAGGACTTTGCAACATACGCGGACGCATGTTTTCAAAATTTTGGTGACAGGGTGAAGCACTGGATCACATTCAACGAGCCACATACATTTTCTATACAAGGATATGATGTAGGGCTCGAGGCACCGGGAAGGTGCTCTATCCCCCCTTTACTTTTCTGCAGGGCAGGAAACTCAGCAACTGAGCCTTACACAGTTGCTCACAATGTCATCCTGTCTCATGGAACTGCGGCTGATATTTACCGGAGAAAGTATAAGTCAAAACAGCGTGGATCGGTTGGGGCATCATTTGATGTTATCTGGTATGAATCAGCAACAAACTCGACAGCAGACGTCGTTGCAACTAAAATAGCCCAAGATTTTCAGCTTGGCTGGTTTCTTGATCCATTTATGTTTGGGGATTATCCAAGCTCTATGAGAAGTAGGGTTGGAAGTCGGCTGCCAACCTTTTCCAAATCCGAGTCTGCTCTAATTAAAGGGTCCTTGGATTTTGTGGGCATTAATCACTACACTACCTTCTATGGAAGCAACGATACCGCTGATATAATTGGACATCTACTCAATGACAGCCTTGCAGACTCTGGTGCCATTACTCTTCCATTCAAAGACGGAAAACCTATTGGCGATAGGGCGAATTCTATATGGTTATACATAGTGCCAGAGGGGATGAGAAAATTAATGAACTACATTAAGAAAAAGTACGGCAATCCTCTAGTGATTATCACTGAAAATGGCATGGATGACCCGAATAGCCCATTCATTTCTCTCAAGGATGCTCTAAAGGATACTAAAAGGATTAAATACCACCATGACTATCTTAAGAATTTGCTAGCTTCGATCAAAGAAGACGGCTGCAATGTGAAAGGCTATTTTGCTTGGTCTCTGCTGGATAATTGGGAATGGGCGGCTGGATACACTTCTCGATTTGGTCTCTATTTTGTGGATTATAAGGACAAGCTCAAGAGATACCCAAAGGACTCCGTTCAATGGTTCACGAATTTCTTGAATTCTACTCAAACAAGGCCAATGATCATCTGA

Protein Analysis

515

Amino Acids

57.76

Weight (kDa)

6.86

Isoelectric Point (pI)

21.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 33 - 506 2.6e-157 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 270, 1455
AatII GACGTC 1 cut(s) 843
AccB1I GGYRCC 2 cut(s) 631, 1091
AccII CGCG 1 cut(s) 530
AciI CCGC 6 cut(s) 374, 486, 530, 737, 1044, 1412
AclWI GGATC 3 cut(s) 581, 787, 884
AcsI RAATTY 5 cut(s) 547, 1141, 1330, 1504, 1513
AcyI GRCGYC 1 cut(s) 840
AfaI GTAC 2 cut(s) 149, 1208
AfiI CCNNNNNNNGG 4 cut(s) 28, 271, 336, 1494
AflII CTTAAG 1 cut(s) 1325
AgsI TTSAA 7 cut(s) 324, 428, 545, 583, 1111, 1493, 1513
AjnI CCWGG 1 cut(s) 329
AluBI AGCT 6 cut(s) 26, 102, 874, 918, 1340, 1465
AluI AGCT 6 cut(s) 26, 102, 874, 918, 1340, 1465
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 4 cut(s) 401, 729, 1392, 1442
AlwI GGATC 3 cut(s) 581, 787, 884
AlwNI CAGNNNCTG 2 cut(s) 689, 1088
Ama87I CYCGRG 1 cut(s) 626
AoxI GGCC 4 cut(s) 19, 179, 359, 1529
ApeKI GCWGC 2 cut(s) 946, 1359
ApoI RAATTY 5 cut(s) 547, 1141, 1330, 1504, 1513
ArsI GACNNNNNNTTYG 4 cut(s) 59, 91, 102, 134
AseI ATTAAT 3 cut(s) 366, 1008, 1184
AspS9I GGNCC 4 cut(s) 179, 359, 454, 987
AsuC2I CCSGG 2 cut(s) 358, 636
AsuHPI GGTGA 3 cut(s) 254, 566, 574
AsuNHI GCTAGC 2 cut(s) 412, 1336
AvaI CYCGRG 1 cut(s) 626
AvaII GGWCC 2 cut(s) 454, 987
BanI GGYRCC 2 cut(s) 631, 1091
BanII GRGCYC 1 cut(s) 627
BarI GAAGNNNNNNTAC 2 cut(s) 1024, 1056
BbsI GAAGAC 4 cut(s) 112, 126, 480, 1359
Bbv12I GWGCWC 1 cut(s) 647
BbvI GCAGC 2 cut(s) 933, 1346
BceAI ACGGC 2 cut(s) 1225, 1372
BcgI CGANNNNNNTGC 2 cut(s) 810, 844
BciT130I CCWGG 1 cut(s) 331
BciVI GTATCC 2 cut(s) 1285, 1412
BclI TGATCA 1 cut(s) 1536
BcnI CCSGG 2 cut(s) 358, 636
BcoDI GTCTC 4 cut(s) 401, 729, 1392, 1442
BfaI CTAG 4 cut(s) 23, 413, 1220, 1337
BfmI CTRYAG 1 cut(s) 667
BfrI CTTAAG 1 cut(s) 1325
BfuI GTATCC 2 cut(s) 1285, 1412
BisI GCNGC 4 cut(s) 738, 947, 1360, 1413
BlsI GCNGC 4 cut(s) 739, 948, 1361, 1414
Bme1390I CCNGG 3 cut(s) 331, 358, 636
Bme18I GGWCC 2 cut(s) 454, 987
BmeT110I CYCGRG 1 cut(s) 626
BmgT120I GGNCC 4 cut(s) 179, 359, 454, 987
BmiI GGNNCC 6 cut(s) 180, 355, 455, 633, 988, 1093
BmrFI CCNGG 3 cut(s) 331, 358, 636
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 4 cut(s) 298, 394, 800, 1270
BmtI GCTAGC 2 cut(s) 416, 1340
BmuI ACTGGG 1 cut(s) 460
BpiI GAAGAC 4 cut(s) 112, 126, 480, 1359
BpuEI CTTGAG 4 cut(s) 447, 486, 1259, 1451
BpuMI CCSGG 2 cut(s) 358, 636
Bsa29I ATCGAT 1 cut(s) 402
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 840
BsaI GGTCTC 2 cut(s) 1392, 1442
BsaJI CCNNGG 1 cut(s) 990
BsaWI WCCGGW 1 cut(s) 750
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 271, 336, 1494
Bse1I ACTGG 4 cut(s) 145, 231, 455, 575
Bse3DI GCAATG 2 cut(s) 407, 1369
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 1 cut(s) 331
BseCI ATCGAT 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 990
BseGI GGATG 7 cut(s) 259, 283, 313, 717, 1179, 1252, 1285
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 4 cut(s) 28, 271, 336, 1494
BseMI GCAATG 2 cut(s) 407, 1369
BseMII CTCAG 2 cut(s) 681, 696
BseNI ACTGG 4 cut(s) 145, 231, 455, 575
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 933, 1346
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 530
BshFI GGCC 4 cut(s) 21, 181, 361, 1531
BshNI GGYRCC 2 cut(s) 631, 1091
BshVI ATCGAT 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 647
BsiHKCI CYCGRG 1 cut(s) 626
BsiSI CCGG 3 cut(s) 357, 635, 751
BslFI GGGAC 2 cut(s) 206, 467
BslI CCNNNNNNNGG 4 cut(s) 28, 271, 336, 1494
BsmAI GTCTC 4 cut(s) 401, 729, 1392, 1442
BsmBI CGTCTC 1 cut(s) 401
BsmFI GGGAC 2 cut(s) 206, 467
BsnI GGCC 4 cut(s) 21, 181, 361, 1531
Bso31I GGTCTC 2 cut(s) 1392, 1442
BsoBI CYCGRG 1 cut(s) 626
Bsp1286I GDGCHC 2 cut(s) 627, 647
Bsp143I GATC 5 cut(s) 573, 779, 889, 1344, 1536
BspACI CCGC 6 cut(s) 374, 486, 530, 737, 1044, 1412
BspANI GGCC 4 cut(s) 21, 181, 361, 1531
BspCNI CTCAG 2 cut(s) 682, 695
BspDI ATCGAT 1 cut(s) 402
BspFNI CGCG 1 cut(s) 530
BspLI GGNNCC 6 cut(s) 180, 355, 455, 633, 988, 1093
BspMAI CTGCAG 1 cut(s) 671
BspOI GCTAGC 2 cut(s) 416, 1340
BspPI GGATC 3 cut(s) 581, 787, 884
BspT107I GGYRCC 2 cut(s) 631, 1091
BspTI CTTAAG 1 cut(s) 1325
BspTNI GGTCTC 2 cut(s) 1392, 1442
BsrDI GCAATG 2 cut(s) 407, 1369
BsrI ACTGG 4 cut(s) 145, 231, 455, 575
BssECI CCNNGG 1 cut(s) 990
BssMI GATC 5 cut(s) 573, 779, 889, 1344, 1536
BssNI GRCGYC 1 cut(s) 840
BssT1I CCWWGG 1 cut(s) 990
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 703
Bst6I CTCTTC 1 cut(s) 1107
BstACI GRCGYC 1 cut(s) 840
BstAFI CTTAAG 1 cut(s) 1325
BstAPI GCANNNNNTGC 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 414, 1338
BstDEI CTNAG 2 cut(s) 682, 690
BstF5I GGATG 7 cut(s) 259, 283, 313, 717, 1179, 1252, 1285
BstFNI CGCG 1 cut(s) 530
BstKTI GATC 5 cut(s) 576, 782, 892, 1347, 1539
BstMAI GTCTC 4 cut(s) 401, 729, 1392, 1442
BstMBI GATC 5 cut(s) 573, 779, 889, 1344, 1536
BstMWI GCNNNNNNNGC 4 cut(s) 137, 245, 413, 527
BstNI CCWGG 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 540
BstSCI CCNGG 3 cut(s) 329, 356, 634
BstSFI CTRYAG 1 cut(s) 667
BstUI CGCG 1 cut(s) 530
BstV1I GCAGC 2 cut(s) 933, 1346
BstV2I GAAGAC 4 cut(s) 112, 126, 480, 1359
Bsu15I ATCGAT 1 cut(s) 402
BsuI GTATCC 2 cut(s) 1285, 1412
BsuRI GGCC 4 cut(s) 21, 181, 361, 1531
BsuTUI ATCGAT 1 cut(s) 402
BtsCI GGATG 7 cut(s) 259, 283, 313, 717, 1179, 1252, 1285
BtsIMutI CAGTG 3 cut(s) 448, 568, 1230
Cac8I GCNNGC 2 cut(s) 414, 1338
CaiI CAGNNNCTG 2 cut(s) 689, 1088
Cfr13I GGNCC 4 cut(s) 179, 359, 454, 987
ClaI ATCGAT 1 cut(s) 402
CseI GACGC 2 cut(s) 120, 542
Csp6I GTAC 2 cut(s) 148, 1207
CviAII CATG 4 cut(s) 537, 728, 1243, 1316
CviQI GTAC 2 cut(s) 148, 1207
DdeI CTNAG 2 cut(s) 682, 690
DpnI GATC 5 cut(s) 575, 781, 891, 1346, 1538
DpnII GATC 5 cut(s) 573, 779, 889, 1344, 1536
Eam1104I CTCTTC 1 cut(s) 1107
EarI CTCTTC 1 cut(s) 1107
Eco130I CCWWGG 1 cut(s) 990
Eco147I AGGCCT 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 627
Eco31I GGTCTC 2 cut(s) 1392, 1442
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 454, 987
Eco88I CYCGRG 1 cut(s) 626
EcoO109I RGGNCCY 3 cut(s) 179, 454, 987
EcoRI GAATTC 2 cut(s) 1141, 1513
EcoRII CCWGG 1 cut(s) 329
EcoRV GATATC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 990
EcoT22I ATGCAT 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 627
ErhI CCWWGG 1 cut(s) 990
Esp3I CGTCTC 1 cut(s) 401
FaeI CATG 4 cut(s) 540, 731, 1246, 1319
FalI AAGNNNNNCTT 2 cut(s) 166, 198
FaqI GGGAC 2 cut(s) 206, 467
FatI CATG 4 cut(s) 536, 727, 1242, 1315
FauI CCCGC 2 cut(s) 367, 479
FauNDI CATATG 1 cut(s) 433
FbaI TGATCA 1 cut(s) 1536
Fnu4HI GCNGC 4 cut(s) 738, 947, 1360, 1413
FokI GGATG 7 cut(s) 266, 290, 320, 704, 1186, 1259, 1292
FriOI GRGCYC 1 cut(s) 627
Fsp4HI GCNGC 4 cut(s) 738, 947, 1360, 1413
FspBI CTAG 4 cut(s) 23, 413, 1220, 1337
GluI GCNGC 4 cut(s) 738, 947, 1360, 1413
HaeIII GGCC 4 cut(s) 21, 181, 361, 1531
HapII CCGG 3 cut(s) 357, 635, 751
HgaI GACGC 2 cut(s) 120, 542
Hin1I GRCGYC 1 cut(s) 840
Hin1II CATG 4 cut(s) 540, 731, 1246, 1319
HinfI GANTC 7 cut(s) 80, 227, 334, 815, 968, 1085, 1484
HpaII CCGG 3 cut(s) 357, 635, 751
HphI GGTGA 3 cut(s) 254, 566, 574
Hpy166II GTNNAC 2 cut(s) 169, 1500
Hpy188I TCNGA 7 cut(s) 10, 79, 85, 125, 339, 967, 1544
Hpy188III TCNNGA 5 cut(s) 887, 1428, 1468, 1501, 1510
Hpy8I GTNNAC 2 cut(s) 169, 1500
Hpy99I CGWCG 1 cut(s) 845
HpyAV CCTTC 6 cut(s) 146, 168, 192, 286, 633, 1033
HpyCH4III ACNGT 1 cut(s) 703
HpyCH4IV ACGT 2 cut(s) 286, 840
HpyCH4V TGCA 9 cut(s) 158, 239, 283, 407, 521, 669, 848, 1082, 1362
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 245, 413, 527
HpyF3I CTNAG 2 cut(s) 682, 690
HpySE526I ACGT 2 cut(s) 286, 840
Hsp92I GRCGYC 1 cut(s) 840
Hsp92II CATG 4 cut(s) 540, 731, 1246, 1319
Ksp22I TGATCA 1 cut(s) 1536
Kzo9I GATC 5 cut(s) 573, 779, 889, 1344, 1536
Lsp1109I GCAGC 2 cut(s) 933, 1346
LweI GCATC 4 cut(s) 298, 394, 800, 1270
MaeI CTAG 4 cut(s) 23, 413, 1220, 1337
MaeII ACGT 2 cut(s) 286, 840
MaeIII GTNAC 3 cut(s) 34, 436, 554
MalI GATC 5 cut(s) 575, 781, 891, 1346, 1538
MboI GATC 5 cut(s) 573, 779, 889, 1344, 1536
MboII GAAGA 5 cut(s) 112, 126, 485, 1094, 1364
MhlI GDGCHC 2 cut(s) 627, 647
MlyI GAGTC 4 cut(s) 328, 977, 1079, 1478
MmeI TCCRAC 2 cut(s) 57, 916
Mph1103I ATGCAT 1 cut(s) 409
MseI TTAA 8 cut(s) 162, 366, 981, 1008, 1184, 1197, 1305, 1326
MslI CAYNNNNRTG 1 cut(s) 302
MspA1I CMGCKG 2 cut(s) 486, 1046
MspCI CTTAAG 1 cut(s) 1325
MspI CCGG 3 cut(s) 357, 635, 751
MspR9I CCNGG 3 cut(s) 331, 358, 636
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 4 cut(s) 137, 245, 413, 527
NciI CCSGG 2 cut(s) 358, 636
NdeI CATATG 1 cut(s) 433
NdeII GATC 5 cut(s) 573, 779, 889, 1344, 1536
NheI GCTAGC 2 cut(s) 412, 1336
NlaIII CATG 4 cut(s) 540, 731, 1246, 1319
NlaIV GGNNCC 6 cut(s) 180, 355, 455, 633, 988, 1093
NmuCI GTSAC 3 cut(s) 34, 436, 554
NsiI ATGCAT 1 cut(s) 409
NspI RCATGY 1 cut(s) 540
PaeR7I CTCGAG 1 cut(s) 626
PceI AGGCCT 1 cut(s) 21
PfeI GAWTC 3 cut(s) 80, 227, 815
PfoI TCCNGGA 1 cut(s) 329
PkrI GCNGC 4 cut(s) 739, 948, 1361, 1414
PleI GAGTC 4 cut(s) 328, 976, 1079, 1478
PpsI GAGTC 4 cut(s) 328, 976, 1079, 1478
PpuMI RGGWCCY 2 cut(s) 454, 987
PshBI ATTAAT 3 cut(s) 366, 1008, 1184
PsiI TTATAA 2 cut(s) 270, 1455
Psp5II RGGWCCY 2 cut(s) 454, 987
Psp6I CCWGG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 6 cut(s) 180, 355, 455, 633, 988, 1093
PspPI GGNCC 4 cut(s) 179, 359, 454, 987
PspPPI RGGWCCY 2 cut(s) 454, 987
PspXI VCTCGAGB 1 cut(s) 626
PstI CTGCAG 1 cut(s) 671
PstNI CAGNNNCTG 2 cut(s) 689, 1088
RsaI GTAC 2 cut(s) 149, 1208
RsaNI GTAC 2 cut(s) 148, 1207
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 8 cut(s) 162, 366, 981, 1008, 1184, 1197, 1305, 1326
SatI GCNGC 4 cut(s) 738, 947, 1360, 1413
Sau3AI GATC 5 cut(s) 573, 779, 889, 1344, 1536
Sau96I GGNCC 4 cut(s) 179, 359, 454, 987
SchI GAGTC 4 cut(s) 328, 977, 1079, 1478
ScrFI CCNGG 3 cut(s) 331, 358, 636
SduI GDGCHC 2 cut(s) 627, 647
SfaNI GCATC 4 cut(s) 298, 394, 800, 1270
SfcI CTRYAG 1 cut(s) 667
Sfr274I CTCGAG 1 cut(s) 626
SinI GGWCC 2 cut(s) 454, 987
SlaI CTCGAG 1 cut(s) 626
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 6 cut(s) 462, 501, 626, 1274, 1325, 1466
SmoI CTYRAG 6 cut(s) 462, 501, 626, 1274, 1325, 1466
SseBI AGGCCT 1 cut(s) 21
SsiI CCGC 6 cut(s) 374, 486, 530, 737, 1044, 1412
SspMI CTAG 4 cut(s) 23, 413, 1220, 1337
StuI AGGCCT 1 cut(s) 21
StyD4I CCNGG 3 cut(s) 329, 356, 634
StyI CCWWGG 1 cut(s) 990
TaaI ACNGT 1 cut(s) 703
TaiI ACGT 2 cut(s) 289, 843
TaqI TCGA 5 cut(s) 402, 627, 830, 1343, 1429
TauI GCSGC 2 cut(s) 740, 1415
TfiI GAWTC 3 cut(s) 80, 227, 815
Tru1I TTAA 8 cut(s) 162, 366, 981, 1008, 1184, 1197, 1305, 1326
Tru9I TTAA 8 cut(s) 162, 366, 981, 1008, 1184, 1197, 1305, 1326
TscAI CASTG 3 cut(s) 455, 575, 1237
TseFI GTSAC 3 cut(s) 34, 436, 554
TseI GCWGC 2 cut(s) 946, 1359
Tsp45I GTSAC 3 cut(s) 34, 436, 554
TspDTI ATGAA 4 cut(s) 305, 828, 1202, 1255
TspGWI ACGGA 3 cut(s) 186, 1131, 1477
TspRI CASTG 3 cut(s) 455, 575, 1237
Vha464I CTTAAG 1 cut(s) 1325
VpaK11BI GGWCC 2 cut(s) 454, 987
VspI ATTAAT 3 cut(s) 366, 1008, 1184
XapI RAATTY 5 cut(s) 547, 1141, 1330, 1504, 1513
XceI RCATGY 1 cut(s) 540
XhoI CTCGAG 1 cut(s) 626
XspI CTAG 4 cut(s) 23, 413, 1220, 1337
ZraI GACGTC 1 cut(s) 841
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.